Rh6DG452800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0015560
Physical Location & Seq
Reverse (-)
62467574 .. 62468803
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG452800.1

Sequence Viewer

Length: 804 bp
ATGAAGCGGAAAGACCTCGTATTCGACGACATGTCGTCTCCGTCATCCAAGTCCCGGCGACTGGATGCTAACTTCATCGGAGCCGTGAACGGAGATGGAAGTAGTGCATTCCAGGTGCTTGATCAAACTCCACCACAGAATCGGCCTTTGAAGCGAAAAGAAGCGTTCGACGACTTGTCGCCTCATTTCTCTAAATCCAGGCGACTGGATGCTGATTTGTTTTCGACTATGGCGGAAGACCAGAGTGGTGGAATTGAGGCCTTGGAGCAAAGGCTAGCACAGGAACAGGCCTTGGCATGCCCCAGTGAGATGCAGAAGGGGGCTTTGCCGATGGAGCCGTTGGCATTGCCTGAGGAAAATGAGAAGGCTCTTGTGCTCTACAACCCTGCGAATACGTTTTACAAGACTCCTGCTTCCAAGGATTTCTCTATCATTGTGAATTCGGACTTGATTCCGGGTTTAAGAGACCATATCTTTACACAGGGAAGTTTAAAACCAGTAGAGGCTGAGCGAAGTGACAGAGAAGATTCAAATGGCTGTTTGGCTATTGTTCCTTGGGTTGAATCTAATTGGCCTCCATACTCAAGTTCAGAGACACAGGCAGCCGGTCTTTCGGAGCCAATGCAAGCTGAAGAAGTTGAAATGATGGACACAGATGATAACAGTTCTGATGGCTCTAAATCTTCTGAGTTAGGTGTTATGATGGATGGATCTTTTGAATTACAACGCTGGCAGCAACAGCAACAACTCCATTGTATGGAGCCACAGCTGCTCAATAACACTATCACCCCCATCACTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

267

Amino Acids

29.7

Weight (kDa)

4.49

Isoelectric Point (pI)

61.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36450
malus_domestica MD08G1124200.v1.1 MD15G1102900.v1.1
prunus_persica Prupe.1G455900_v2.0.a1
pyrus_communis pycom08g10300 pycom15g09390
rosa_chinensis RchiOBHm_Chr6g0305451
rosa_laevigata RLG00000010891
rosa_multiflora Rmu_sc0007817.1_g000006
rosa_roxburghii Rroxscaffold_7G00162810
rosa_rugosa Rorug06G0340300
rosa_samantha Rh6AG452400 Rh6BG449400 Rh6CG466100 Rh6DG452800
rosa_wichuraiana Rw6G039410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 757, 798
AciI CCGC 2 cut(s) 7, 233
AclWI GGATC 1 cut(s) 718
AcsI RAATTY 1 cut(s) 439
AcuI CTGAAG 1 cut(s) 651
AfiI CCNNNNNNNGG 4 cut(s) 54, 61, 757, 798
AflIII ACRYGT 1 cut(s) 30
AgsI TTSAA 5 cut(s) 151, 531, 563, 641, 719
AhdI GACNNNNNGTC 3 cut(s) 31, 34, 175
AjnI CCWGG 2 cut(s) 111, 197
AluBI AGCT 2 cut(s) 629, 769
AluI AGCT 2 cut(s) 629, 769
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 3 cut(s) 42, 459, 587
AlwI GGATC 1 cut(s) 718
AoxI GGCC 4 cut(s) 143, 258, 288, 572
ApeKI GCWGC 3 cut(s) 602, 733, 769
ApoI RAATTY 1 cut(s) 439
ArsI GACNNNNNNTTYG 1 cut(s) 37
AsuC2I CCSGG 2 cut(s) 55, 456
AsuHPI GGTGA 1 cut(s) 778
AsuNHI GCTAGC 1 cut(s) 274
AxyI CCTNAGG 1 cut(s) 351
BbsI GAAGAC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 378
BbvI GCAGC 3 cut(s) 614, 745, 756
BccI CCATC 7 cut(s) 89, 325, 640, 665, 697, 701, 800
BceAI ACGGC 2 cut(s) 68, 322
BciT130I CCWGG 2 cut(s) 113, 199
BclI TGATCA 1 cut(s) 121
BcnI CCSGG 2 cut(s) 55, 456
BcoDI GTCTC 3 cut(s) 42, 459, 587
BfaI CTAG 1 cut(s) 275
BisI GCNGC 3 cut(s) 603, 734, 770
BlpI GCTNAGC 1 cut(s) 507
BlsI GCNGC 3 cut(s) 604, 735, 771
Bme1390I CCNGG 4 cut(s) 55, 113, 199, 456
BmeRI GACNNNNNGTC 3 cut(s) 31, 34, 175
BmiI GGNNCC 4 cut(s) 82, 336, 618, 762
BmrFI CCNGG 4 cut(s) 55, 113, 199, 456
BmrI ACTGGG 1 cut(s) 297
BmsI GCATC 3 cut(s) 55, 199, 300
BmtI GCTAGC 1 cut(s) 278
BmuI ACTGGG 1 cut(s) 297
BpiI GAAGAC 1 cut(s) 243
Bpu1102I GCTNAGC 1 cut(s) 507
BpuEI CTTGAG 1 cut(s) 568
BpuMI CCSGG 2 cut(s) 55, 456
BsaI GGTCTC 1 cut(s) 459
BsaJI CCNNGG 4 cut(s) 261, 291, 417, 554
Bsc4I CCNNNNNNNGG 4 cut(s) 54, 61, 757, 798
Bse118I RCCGGY 1 cut(s) 605
Bse1I ACTGG 4 cut(s) 66, 210, 303, 497
Bse21I CCTNAGG 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 344
BseBI CCWGG 2 cut(s) 113, 199
BseDI CCNNGG 4 cut(s) 261, 291, 417, 554
BseGI GGATG 4 cut(s) 44, 70, 214, 712
BseLI CCNNNNNNNGG 4 cut(s) 54, 61, 757, 798
BseMI GCAATG 1 cut(s) 344
BseMII CTCAG 3 cut(s) 342, 498, 678
BseNI ACTGG 4 cut(s) 66, 210, 303, 497
BseXI GCAGC 3 cut(s) 614, 745, 756
BshFI GGCC 4 cut(s) 145, 260, 290, 574
BsiHKAI GWGCWC 1 cut(s) 378
BsiSI CCGG 3 cut(s) 55, 455, 606
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 4 cut(s) 54, 61, 757, 798
BsmAI GTCTC 3 cut(s) 42, 459, 587
BsmBI CGTCTC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 37
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 4 cut(s) 145, 260, 290, 574
Bso31I GGTCTC 1 cut(s) 459
Bsp1286I GDGCHC 1 cut(s) 378
Bsp143I GATC 2 cut(s) 121, 710
Bsp1720I GCTNAGC 1 cut(s) 507
BspACI CCGC 2 cut(s) 7, 233
BspANI GGCC 4 cut(s) 145, 260, 290, 574
BspCNI CTCAG 3 cut(s) 343, 499, 679
BspLI GGNNCC 4 cut(s) 82, 336, 618, 762
BspOI GCTAGC 1 cut(s) 278
BspPI GGATC 1 cut(s) 718
BspTNI GGTCTC 1 cut(s) 459
BsrDI GCAATG 1 cut(s) 344
BsrFI RCCGGY 1 cut(s) 605
BsrI ACTGG 4 cut(s) 66, 210, 303, 497
BssAI RCCGGY 1 cut(s) 605
BssECI CCNNGG 4 cut(s) 261, 291, 417, 554
BssMI GATC 2 cut(s) 121, 710
BssT1I CCWWGG 4 cut(s) 261, 291, 417, 554
Bst2UI CCWGG 2 cut(s) 113, 199
Bst4CI ACNGT 1 cut(s) 665
BstC8I GCNNGC 4 cut(s) 276, 298, 627, 731
BstDEI CTNAG 3 cut(s) 351, 507, 687
BstF5I GGATG 4 cut(s) 44, 70, 214, 712
BstKTI GATC 2 cut(s) 124, 713
BstMAI GTCTC 3 cut(s) 42, 459, 587
BstMBI GATC 2 cut(s) 121, 710
BstMWI GCNNNNNNNGC 4 cut(s) 151, 334, 739, 769
BstNI CCWGG 2 cut(s) 113, 199
BstNSI RCATGY 2 cut(s) 34, 300
BstSCI CCNGG 4 cut(s) 53, 111, 197, 454
BstV1I GCAGC 3 cut(s) 614, 745, 756
BstV2I GAAGAC 1 cut(s) 243
BstX2I RGATCY 1 cut(s) 710
BstXI CCANNNNNNTGG 2 cut(s) 205, 248
BstYI RGATCY 1 cut(s) 710
Bsu36I CCTNAGG 1 cut(s) 351
BsuRI GGCC 4 cut(s) 145, 260, 290, 574
BtsCI GGATG 4 cut(s) 44, 70, 214, 712
BtsIMutI CAGTG 1 cut(s) 310
Cac8I GCNNGC 4 cut(s) 276, 298, 627, 731
Cfr10I RCCGGY 1 cut(s) 605
CviAII CATG 2 cut(s) 31, 297
DdeI CTNAG 3 cut(s) 351, 507, 687
DpnI GATC 2 cut(s) 123, 712
DpnII GATC 2 cut(s) 121, 710
DraI TTTAAA 1 cut(s) 492
DriI GACNNNNNGTC 3 cut(s) 31, 34, 175
Eam1105I GACNNNNNGTC 3 cut(s) 31, 34, 175
EciI GGCGGA 1 cut(s) 248
Eco130I CCWWGG 4 cut(s) 261, 291, 417, 554
Eco147I AGGCCT 2 cut(s) 260, 290
Eco31I GGTCTC 1 cut(s) 459
Eco57I CTGAAG 1 cut(s) 651
Eco81I CCTNAGG 1 cut(s) 351
EcoRI GAATTC 1 cut(s) 439
EcoRII CCWGG 2 cut(s) 111, 197
EcoT14I CCWWGG 4 cut(s) 261, 291, 417, 554
ErhI CCWWGG 4 cut(s) 261, 291, 417, 554
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 2 cut(s) 34, 300
FaiI YATR 7 cut(s) 32, 230, 298, 471, 580, 701, 758
FaqI GGGAC 1 cut(s) 37
FatI CATG 2 cut(s) 30, 296
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 3 cut(s) 603, 734, 770
FokI GGATG 4 cut(s) 31, 77, 221, 719
Fsp4HI GCNGC 3 cut(s) 603, 734, 770
FspBI CTAG 1 cut(s) 275
GluI GCNGC 3 cut(s) 603, 734, 770
HaeIII GGCC 4 cut(s) 145, 260, 290, 574
HapII CCGG 3 cut(s) 55, 455, 606
Hin1II CATG 2 cut(s) 34, 300
HinfI GANTC 5 cut(s) 139, 406, 451, 527, 563
HpaII CCGG 3 cut(s) 55, 455, 606
HphI GGTGA 1 cut(s) 778
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 6 cut(s) 80, 445, 592, 616, 670, 688
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 2 cut(s) 29, 173
HpyAV CCTTC 2 cut(s) 310, 358
HpyCH4III ACNGT 1 cut(s) 665
HpyCH4IV ACGT 1 cut(s) 395
HpyCH4V TGCA 3 cut(s) 107, 313, 625
HpyF10VI GCNNNNNNNGC 4 cut(s) 151, 334, 739, 769
HpyF3I CTNAG 3 cut(s) 351, 507, 687
HpySE526I ACGT 1 cut(s) 395
Hsp92II CATG 2 cut(s) 34, 300
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 2 cut(s) 121, 710
LmnI GCTCC 5 cut(s) 80, 265, 334, 616, 760
Lsp1109I GCAGC 3 cut(s) 614, 745, 756
LweI GCATC 3 cut(s) 55, 199, 300
MaeI CTAG 1 cut(s) 275
MaeII ACGT 1 cut(s) 395
MaeIII GTNAC 1 cut(s) 515
MalI GATC 2 cut(s) 123, 712
MboI GATC 2 cut(s) 121, 710
MboII GAAGA 4 cut(s) 248, 536, 644, 675
MflI RGATCY 1 cut(s) 710
MhlI GDGCHC 1 cut(s) 378
MluCI AATT 4 cut(s) 252, 439, 568, 719
MlyI GAGTC 1 cut(s) 400
MnlI CCTC 6 cut(s) 26, 192, 250, 346, 496, 585
MseI TTAA 2 cut(s) 461, 491
MspA1I CMGCKG 1 cut(s) 769
MspI CCGG 3 cut(s) 55, 455, 606
MspR9I CCNGG 4 cut(s) 55, 113, 199, 456
Mva1269I GAATGC 1 cut(s) 107
MvaI CCWGG 2 cut(s) 113, 199
MwoI GCNNNNNNNGC 4 cut(s) 151, 334, 739, 769
NciI CCSGG 2 cut(s) 55, 456
NdeII GATC 2 cut(s) 121, 710
NheI GCTAGC 1 cut(s) 274
NlaIII CATG 2 cut(s) 34, 300
NlaIV GGNNCC 4 cut(s) 82, 336, 618, 762
NmuCI GTSAC 1 cut(s) 515
NspI RCATGY 2 cut(s) 34, 300
PaeI GCATGC 1 cut(s) 300
PceI AGGCCT 2 cut(s) 260, 290
PciI ACATGT 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PctI GAATGC 1 cut(s) 107
PfeI GAWTC 4 cut(s) 139, 451, 527, 563
PflMI CCANNNNNTGG 2 cut(s) 757, 798
PkrI GCNGC 3 cut(s) 604, 735, 771
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
PscI ACATGT 1 cut(s) 30
Psp6I CCWGG 2 cut(s) 111, 197
PspGI CCWGG 2 cut(s) 111, 197
PspN4I GGNNCC 4 cut(s) 82, 336, 618, 762
PsuI RGATCY 1 cut(s) 710
PvuII CAGCTG 1 cut(s) 769
SaqAI TTAA 2 cut(s) 461, 491
SatI GCNGC 3 cut(s) 603, 734, 770
Sau3AI GATC 2 cut(s) 121, 710
SchI GAGTC 1 cut(s) 400
ScrFI CCNGG 4 cut(s) 55, 113, 199, 456
SduI GDGCHC 1 cut(s) 378
SetI ASST 6 cut(s) 18, 117, 398, 631, 697, 771
SfaNI GCATC 3 cut(s) 55, 199, 300
SmlI CTYRAG 1 cut(s) 583
SmoI CTYRAG 1 cut(s) 583
SphI GCATGC 1 cut(s) 300
Sse9I AATT 4 cut(s) 252, 439, 568, 719
SseBI AGGCCT 2 cut(s) 260, 290
SsiI CCGC 2 cut(s) 7, 233
SspMI CTAG 1 cut(s) 275
StuI AGGCCT 2 cut(s) 260, 290
StyD4I CCNGG 4 cut(s) 53, 111, 197, 454
StyI CCWWGG 4 cut(s) 261, 291, 417, 554
TaaI ACNGT 1 cut(s) 665
TaiI ACGT 1 cut(s) 398
TaqI TCGA 3 cut(s) 24, 168, 224
TasI AATT 4 cut(s) 252, 439, 568, 719
TfiI GAWTC 4 cut(s) 139, 451, 527, 563
Tru1I TTAA 2 cut(s) 461, 491
Tru9I TTAA 2 cut(s) 461, 491
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 1 cut(s) 515
TseI GCWGC 3 cut(s) 602, 733, 769
Tsp45I GTSAC 1 cut(s) 515
TspDTI ATGAA 2 cut(s) 17, 64
TspGWI ACGGA 2 cut(s) 30, 105
TspRI CASTG 1 cut(s) 310
Van91I CCANNNNNTGG 2 cut(s) 757, 798
XapI RAATTY 1 cut(s) 439
XceI RCATGY 2 cut(s) 34, 300
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.