Rroxscaffold_7G00162810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015560
Physical Location & Seq
Forward (+)
5200253 .. 5201940
1688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00162810.1

Sequence Viewer

Length: 816 bp
ATGAAGCGGAAAGACCTCGTTTTCGACGACATGTCGTCTCCGTCATCCAAGTCCCGGCGACTGGATGCTAACTTCATCGGAGCGGTGAACGGAGATGGAAGTAGTAGTGCATTCCAGGTGCTTGATCAAACGCCACCACAGAATCGGCCTTTGAAGCGAAAAGAAGCGTTCGACGACTTGTCGCCGCATTTCTCTAAATCCAGGCGACTGGATGCTGATTTGTTTTCGACTATGGCGGAAGATCAGAGTGGTGGAATTGAGGCCTTGGAGCAAAGGCTAGCACAGGAACAGGCCTTGGCATGCCCCAGTGAGATGCAGAAAGGGGCTTTGCCGATGGAGCCGTTGGCATTGCCTGAGGAAAATGAGAAGGCTCTTGTGCTCTACAACCCTACGAATACGTTTTACAAGACTCCTGCTTCCAAGGATTTCTCTATCATTGTGAATTCGGACTTGATTCCGGGTTTAAGAGACCATATCTTTACACAGGGAAGTTTAAAGTGGTCGAAACCAGTAGAGGCTGAGCAAAGTGACAGGGAAGATTCAAATGGCTGTTTGGCTATTGTTCCTTGGGTTGAATCTAATTGGCCGCCATCCTCAAGTTCAGAGACACAGGCCGCCGGTCTTTTGGAGCCAATGCAAGCTGAAGAAGTTGAAATGATGGACACAGATGATAACAGTTCTGATGGCTCTAAACCTTCTGAGTTAGGTGTTATGATGGATGGATCTTTTGAATTACAACGCTGGCAGCAACAGCAACAACTCCATTGTATGGAACCACAGCTGCTCAATAACACTATCACCCCCGTCACTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

30.14

Weight (kDa)

4.49

Isoelectric Point (pI)

61.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36450
malus_domestica MD08G1124200.v1.1 MD15G1102900.v1.1
prunus_persica Prupe.1G455900_v2.0.a1
pyrus_communis pycom08g10300 pycom15g09390
rosa_chinensis RchiOBHm_Chr6g0305451
rosa_laevigata RLG00000010891
rosa_multiflora Rmu_sc0007817.1_g000006
rosa_roxburghii Rroxscaffold_7G00162810
rosa_rugosa Rorug06G0340300
rosa_samantha Rh6AG452400 Rh6BG449400 Rh6CG466100 Rh6DG452800
rosa_wichuraiana Rw6G039410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 769
AccBSI CCGCTC 1 cut(s) 83
AciI CCGC 6 cut(s) 7, 83, 185, 236, 587, 615
AclWI GGATC 1 cut(s) 730
AcoI YGGCCR 1 cut(s) 584
AcsI RAATTY 1 cut(s) 442
AcuI CTGAAG 1 cut(s) 663
AfiI CCNNNNNNNGG 4 cut(s) 54, 61, 769, 810
AflIII ACRYGT 1 cut(s) 30
AgsI TTSAA 5 cut(s) 154, 543, 575, 653, 731
AhdI GACNNNNNGTC 3 cut(s) 31, 34, 178
AjnI CCWGG 2 cut(s) 114, 200
AluBI AGCT 2 cut(s) 641, 781
AluI AGCT 2 cut(s) 641, 781
Alw21I GWGCWC 1 cut(s) 381
Alw26I GTCTC 3 cut(s) 42, 462, 599
AlwI GGATC 1 cut(s) 730
AoxI GGCC 5 cut(s) 146, 261, 291, 584, 612
ApeKI GCWGC 2 cut(s) 745, 781
ApoI RAATTY 1 cut(s) 442
ArsI GACNNNNNNTTYG 1 cut(s) 37
AsuC2I CCSGG 2 cut(s) 55, 459
AsuHPI GGTGA 2 cut(s) 97, 790
AsuNHI GCTAGC 1 cut(s) 277
AxyI CCTNAGG 1 cut(s) 354
Bbv12I GWGCWC 1 cut(s) 381
BbvI GCAGC 2 cut(s) 757, 768
BccI CCATC 7 cut(s) 89, 328, 598, 652, 677, 709, 713
BceAI ACGGC 1 cut(s) 325
BciT130I CCWGG 2 cut(s) 116, 202
BclI TGATCA 1 cut(s) 124
BcnI CCSGG 2 cut(s) 55, 459
BcoDI GTCTC 3 cut(s) 42, 462, 599
BfaI CTAG 1 cut(s) 278
BisI GCNGC 5 cut(s) 185, 587, 615, 746, 782
BlpI GCTNAGC 1 cut(s) 519
BlsI GCNGC 5 cut(s) 186, 588, 616, 747, 783
Bme1390I CCNGG 4 cut(s) 55, 116, 202, 459
BmeRI GACNNNNNGTC 3 cut(s) 31, 34, 178
BmiI GGNNCC 3 cut(s) 339, 630, 774
BmrFI CCNGG 4 cut(s) 55, 116, 202, 459
BmrI ACTGGG 1 cut(s) 300
BmsI GCATC 3 cut(s) 55, 202, 303
BmtI GCTAGC 1 cut(s) 281
BmuI ACTGGG 1 cut(s) 300
Bpu1102I GCTNAGC 1 cut(s) 519
BpuEI CTTGAG 1 cut(s) 580
BpuMI CCSGG 2 cut(s) 55, 459
BsaI GGTCTC 1 cut(s) 462
BsaJI CCNNGG 4 cut(s) 264, 294, 420, 566
Bsc4I CCNNNNNNNGG 4 cut(s) 54, 61, 769, 810
Bse118I RCCGGY 1 cut(s) 617
Bse1I ACTGG 4 cut(s) 66, 213, 306, 509
Bse21I CCTNAGG 1 cut(s) 354
Bse3DI GCAATG 1 cut(s) 347
BseBI CCWGG 2 cut(s) 116, 202
BseDI CCNNGG 4 cut(s) 264, 294, 420, 566
BseGI GGATG 5 cut(s) 44, 70, 217, 590, 724
BseLI CCNNNNNNNGG 4 cut(s) 54, 61, 769, 810
BseMI GCAATG 1 cut(s) 347
BseMII CTCAG 3 cut(s) 345, 510, 690
BseNI ACTGG 4 cut(s) 66, 213, 306, 509
BseXI GCAGC 2 cut(s) 757, 768
BshFI GGCC 5 cut(s) 148, 263, 293, 586, 614
BsiHKAI GWGCWC 1 cut(s) 381
BsiSI CCGG 3 cut(s) 55, 458, 618
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 4 cut(s) 54, 61, 769, 810
BsmAI GTCTC 3 cut(s) 42, 462, 599
BsmBI CGTCTC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 37
BsmI GAATGC 1 cut(s) 110
BsnI GGCC 5 cut(s) 148, 263, 293, 586, 614
Bso31I GGTCTC 1 cut(s) 462
Bsp1286I GDGCHC 1 cut(s) 381
Bsp143I GATC 3 cut(s) 124, 241, 722
Bsp1720I GCTNAGC 1 cut(s) 519
BspACI CCGC 6 cut(s) 7, 83, 185, 236, 587, 615
BspANI GGCC 5 cut(s) 148, 263, 293, 586, 614
BspCNI CTCAG 3 cut(s) 346, 511, 691
BspLI GGNNCC 3 cut(s) 339, 630, 774
BspOI GCTAGC 1 cut(s) 281
BspPI GGATC 1 cut(s) 730
BspTNI GGTCTC 1 cut(s) 462
BsrBI CCGCTC 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 347
BsrFI RCCGGY 1 cut(s) 617
BsrI ACTGG 4 cut(s) 66, 213, 306, 509
BssAI RCCGGY 1 cut(s) 617
BssECI CCNNGG 4 cut(s) 264, 294, 420, 566
BssMI GATC 3 cut(s) 124, 241, 722
BssT1I CCWWGG 4 cut(s) 264, 294, 420, 566
Bst2UI CCWGG 2 cut(s) 116, 202
Bst4CI ACNGT 1 cut(s) 677
BstC8I GCNNGC 4 cut(s) 279, 301, 639, 743
BstDEI CTNAG 3 cut(s) 354, 519, 699
BstF5I GGATG 5 cut(s) 44, 70, 217, 590, 724
BstKTI GATC 3 cut(s) 127, 244, 725
BstMAI GTCTC 3 cut(s) 42, 462, 599
BstMBI GATC 3 cut(s) 124, 241, 722
BstMWI GCNNNNNNNGC 3 cut(s) 154, 337, 751
BstNI CCWGG 2 cut(s) 116, 202
BstNSI RCATGY 2 cut(s) 34, 303
BstSCI CCNGG 4 cut(s) 53, 114, 200, 457
BstV1I GCAGC 2 cut(s) 757, 768
BstX2I RGATCY 1 cut(s) 722
BstXI CCANNNNNNTGG 1 cut(s) 208
BstYI RGATCY 1 cut(s) 722
Bsu36I CCTNAGG 1 cut(s) 354
BsuRI GGCC 5 cut(s) 148, 263, 293, 586, 614
BtsCI GGATG 5 cut(s) 44, 70, 217, 590, 724
BtsIMutI CAGTG 1 cut(s) 313
Cac8I GCNNGC 4 cut(s) 279, 301, 639, 743
Cfr10I RCCGGY 1 cut(s) 617
CviAII CATG 2 cut(s) 31, 300
DdeI CTNAG 3 cut(s) 354, 519, 699
DpnI GATC 3 cut(s) 126, 243, 724
DpnII GATC 3 cut(s) 124, 241, 722
DraI TTTAAA 1 cut(s) 495
DriI GACNNNNNGTC 3 cut(s) 31, 34, 178
EaeI YGGCCR 1 cut(s) 584
Eam1105I GACNNNNNGTC 3 cut(s) 31, 34, 178
EciI GGCGGA 1 cut(s) 251
Eco130I CCWWGG 4 cut(s) 264, 294, 420, 566
Eco147I AGGCCT 2 cut(s) 263, 293
Eco31I GGTCTC 1 cut(s) 462
Eco57I CTGAAG 1 cut(s) 663
Eco81I CCTNAGG 1 cut(s) 354
EcoRI GAATTC 1 cut(s) 442
EcoRII CCWGG 2 cut(s) 114, 200
EcoT14I CCWWGG 4 cut(s) 264, 294, 420, 566
ErhI CCWWGG 4 cut(s) 264, 294, 420, 566
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 2 cut(s) 34, 303
FaiI YATR 6 cut(s) 32, 233, 301, 474, 713, 770
FaqI GGGAC 1 cut(s) 37
FatI CATG 2 cut(s) 30, 299
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 5 cut(s) 185, 587, 615, 746, 782
FokI GGATG 5 cut(s) 31, 77, 224, 577, 731
Fsp4HI GCNGC 5 cut(s) 185, 587, 615, 746, 782
FspBI CTAG 1 cut(s) 278
GluI GCNGC 5 cut(s) 185, 587, 615, 746, 782
HaeIII GGCC 5 cut(s) 148, 263, 293, 586, 614
HapII CCGG 3 cut(s) 55, 458, 618
Hin1II CATG 2 cut(s) 34, 303
HinfI GANTC 5 cut(s) 142, 409, 454, 539, 575
HpaII CCGG 3 cut(s) 55, 458, 618
HphI GGTGA 2 cut(s) 97, 790
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 6 cut(s) 80, 246, 448, 604, 682, 700
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 2 cut(s) 29, 176
HpyAV CCTTC 2 cut(s) 361, 705
HpyCH4III ACNGT 1 cut(s) 677
HpyCH4IV ACGT 1 cut(s) 398
HpyCH4V TGCA 3 cut(s) 110, 316, 637
HpyF10VI GCNNNNNNNGC 3 cut(s) 154, 337, 751
HpyF3I CTNAG 3 cut(s) 354, 519, 699
HpySE526I ACGT 1 cut(s) 398
Hsp92II CATG 2 cut(s) 34, 303
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 3 cut(s) 124, 241, 722
LmnI GCTCC 4 cut(s) 80, 268, 337, 628
Lsp1109I GCAGC 2 cut(s) 757, 768
LweI GCATC 3 cut(s) 55, 202, 303
MaeI CTAG 1 cut(s) 278
MaeII ACGT 1 cut(s) 398
MaeIII GTNAC 2 cut(s) 527, 805
MalI GATC 3 cut(s) 126, 243, 724
MbiI CCGCTC 1 cut(s) 83
MboI GATC 3 cut(s) 124, 241, 722
MboII GAAGA 3 cut(s) 251, 548, 656
MflI RGATCY 1 cut(s) 722
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 4 cut(s) 255, 442, 580, 731
MlyI GAGTC 1 cut(s) 403
MnlI CCTC 5 cut(s) 26, 253, 349, 508, 604
MseI TTAA 2 cut(s) 464, 494
MspA1I CMGCKG 1 cut(s) 781
MspI CCGG 3 cut(s) 55, 458, 618
MspR9I CCNGG 4 cut(s) 55, 116, 202, 459
Mva1269I GAATGC 1 cut(s) 110
MvaI CCWGG 2 cut(s) 116, 202
MwoI GCNNNNNNNGC 3 cut(s) 154, 337, 751
NciI CCSGG 2 cut(s) 55, 459
NdeII GATC 3 cut(s) 124, 241, 722
NheI GCTAGC 1 cut(s) 277
NlaIII CATG 2 cut(s) 34, 303
NlaIV GGNNCC 3 cut(s) 339, 630, 774
NmuCI GTSAC 2 cut(s) 527, 805
NspI RCATGY 2 cut(s) 34, 303
PaeI GCATGC 1 cut(s) 303
PceI AGGCCT 2 cut(s) 263, 293
PciI ACATGT 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PctI GAATGC 1 cut(s) 110
PfeI GAWTC 4 cut(s) 142, 454, 539, 575
PflMI CCANNNNNTGG 1 cut(s) 769
PkrI GCNGC 5 cut(s) 186, 588, 616, 747, 783
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
PscI ACATGT 1 cut(s) 30
Psp6I CCWGG 2 cut(s) 114, 200
PspGI CCWGG 2 cut(s) 114, 200
PspN4I GGNNCC 3 cut(s) 339, 630, 774
PsuI RGATCY 1 cut(s) 722
PvuII CAGCTG 1 cut(s) 781
SaqAI TTAA 2 cut(s) 464, 494
SatI GCNGC 5 cut(s) 185, 587, 615, 746, 782
Sau3AI GATC 3 cut(s) 124, 241, 722
SchI GAGTC 1 cut(s) 403
ScrFI CCNGG 4 cut(s) 55, 116, 202, 459
SduI GDGCHC 1 cut(s) 381
SetI ASST 7 cut(s) 18, 120, 401, 643, 697, 709, 783
SfaNI GCATC 3 cut(s) 55, 202, 303
SmlI CTYRAG 1 cut(s) 595
SmoI CTYRAG 1 cut(s) 595
SphI GCATGC 1 cut(s) 303
Sse9I AATT 4 cut(s) 255, 442, 580, 731
SseBI AGGCCT 2 cut(s) 263, 293
SsiI CCGC 6 cut(s) 7, 83, 185, 236, 587, 615
SspMI CTAG 1 cut(s) 278
StuI AGGCCT 2 cut(s) 263, 293
StyD4I CCNGG 4 cut(s) 53, 114, 200, 457
StyI CCWWGG 4 cut(s) 264, 294, 420, 566
TaaI ACNGT 1 cut(s) 677
TaiI ACGT 1 cut(s) 401
TaqI TCGA 4 cut(s) 24, 171, 227, 503
TasI AATT 4 cut(s) 255, 442, 580, 731
TauI GCSGC 3 cut(s) 187, 589, 617
TfiI GAWTC 4 cut(s) 142, 454, 539, 575
Tru1I TTAA 2 cut(s) 464, 494
Tru9I TTAA 2 cut(s) 464, 494
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 2 cut(s) 527, 805
TseI GCWGC 2 cut(s) 745, 781
Tsp45I GTSAC 2 cut(s) 527, 805
TspDTI ATGAA 2 cut(s) 17, 64
TspGWI ACGGA 2 cut(s) 30, 105
TspRI CASTG 1 cut(s) 313
Van91I CCANNNNNTGG 1 cut(s) 769
XapI RAATTY 1 cut(s) 442
XceI RCATGY 2 cut(s) 34, 303
XspI CTAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.