MD08G1124200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0015560
Physical Location & Seq
Forward (+)
11665758 .. 11667505
1748 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1124200.v1.1.491

Sequence Viewer

Length: 687 bp
ATGAAGCGCAAGGACATTGTAGAATTAGACGACGACGACTTCTCTCCTTTCTCAAAATCCAGGAGATTGGATGGTGGGTTATTTGCAACGGTAAATGAATACCAAAGTAGTGCAGCTCAGATGTTTGAAGAAATGCCGATACCAGAAACCAGTGTTGTGATGCAAACAGATGATTTGCCAACGGAACCTTTGCCTTCTGGGGATGAGAAAGCTCTTGTGCTCTATAACCCCGCGAATACGCGGTTTTTCAAAGCACCCGATTCGCGGGATTTCTCTGTCATTGTGAATTCGGACTTGATTCCTGGTTTAAGGGATCATATTTATTCATGGGGATATTCAAAGTCACTGAAGCCGGTAGAGGATCGTGGGTCTGAAGAGGAAAACAAAGATGTTTCAAATGGGTGTATGGCTGTTGTTCCCTGGGTTGCACCCAACTTCCCACCAGCTTCACGAGATGAGACACAGATTGCAAGTCAGTCGGAGCCCATGGAAGTTGAAATGATGGACACAGATGATAACAGATTCAATGGGGCGGAAGTGTCTGGGTTCAGTGGAACGATGATGGAAGGGTCGAGTGGAACGATGATGGAAGGATCGAGTGGGTTACACCACTGGCATCAGCAACAGCAACTACATTGGATGGAGCCACAACTCCTCCAGAACAGTTATACTCCCGTCACTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

25.62

Weight (kDa)

4.4

Isoelectric Point (pI)

50.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36450
malus_domestica MD08G1124200.v1.1 MD15G1102900.v1.1
prunus_persica Prupe.1G455900_v2.0.a1
pyrus_communis pycom08g10300 pycom15g09390
rosa_chinensis RchiOBHm_Chr6g0305451
rosa_laevigata RLG00000010891
rosa_multiflora Rmu_sc0007817.1_g000006
rosa_roxburghii Rroxscaffold_7G00162810
rosa_rugosa Rorug06G0340300
rosa_samantha Rh6AG452400 Rh6BG449400 Rh6CG466100 Rh6DG452800
rosa_wichuraiana Rw6G039410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 233, 241, 265
AciI CCGC 4 cut(s) 231, 241, 265, 533
AclWI GGATC 3 cut(s) 321, 369, 601
AcsI RAATTY 1 cut(s) 286
AcuI CTGAAG 2 cut(s) 368, 393
AfiI CCNNNNNNNGG 2 cut(s) 264, 681
AgsI TTSAA 6 cut(s) 128, 250, 339, 396, 497, 526
AjnI CCWGG 3 cut(s) 59, 301, 419
AluBI AGCT 3 cut(s) 116, 212, 446
AluI AGCT 3 cut(s) 116, 212, 446
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 452
AlwI GGATC 3 cut(s) 321, 369, 601
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 286
AspLEI GCGC 1 cut(s) 9
BanII GRGCYC 1 cut(s) 486
BauI CACGAG 1 cut(s) 450
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 1 cut(s) 125
BccI CCATC 5 cut(s) 65, 496, 556, 580, 634
BcgI CGANNNNNNTGC 4 cut(s) 243, 277, 459, 493
BciT130I CCWGG 3 cut(s) 61, 303, 421
BcoDI GTCTC 1 cut(s) 452
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 3 cut(s) 61, 303, 421
BmiI GGNNCC 3 cut(s) 186, 483, 645
BmrFI CCNGG 3 cut(s) 61, 303, 421
BmsI GCATC 2 cut(s) 150, 625
BpmI CTGGAG 1 cut(s) 641
BsaJI CCNNGG 3 cut(s) 419, 420, 486
BsaXI ACNNNNNCTCC 2 cut(s) 639, 669
Bsc4I CCNNNNNNNGG 2 cut(s) 264, 681
Bse118I RCCGGY 1 cut(s) 352
Bse1I ACTGG 2 cut(s) 150, 617
BseBI CCWGG 3 cut(s) 61, 303, 421
BseDI CCNNGG 3 cut(s) 419, 420, 486
BseGI GGATG 3 cut(s) 76, 208, 645
BseLI CCNNNNNNNGG 2 cut(s) 264, 681
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 2 cut(s) 150, 617
BseRI GAGGAG 1 cut(s) 644
BseXI GCAGC 1 cut(s) 125
BsgI GTGCAG 1 cut(s) 132
Bsh1236I CGCG 3 cut(s) 233, 241, 265
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 1 cut(s) 353
BslI CCNNNNNNNGG 2 cut(s) 264, 681
BsmAI GTCTC 1 cut(s) 452
Bsp1286I GDGCHC 2 cut(s) 222, 486
Bsp143I GATC 3 cut(s) 313, 361, 593
Bsp19I CCATGG 1 cut(s) 486
BspACI CCGC 4 cut(s) 231, 241, 265, 533
BspCNI CTCAG 1 cut(s) 130
BspFNI CGCG 3 cut(s) 233, 241, 265
BspLI GGNNCC 3 cut(s) 186, 483, 645
BspPI GGATC 3 cut(s) 321, 369, 601
BsrFI RCCGGY 1 cut(s) 352
BsrI ACTGG 2 cut(s) 150, 617
BssAI RCCGGY 1 cut(s) 352
BssECI CCNNGG 3 cut(s) 419, 420, 486
BssMI GATC 3 cut(s) 313, 361, 593
BssSI CACGAG 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 486
Bst2BI CACGAG 1 cut(s) 450
Bst2UI CCWGG 3 cut(s) 61, 303, 421
Bst4CI ACNGT 2 cut(s) 91, 665
Bst6I CTCTTC 1 cut(s) 369
BstDEI CTNAG 1 cut(s) 117
BstDSI CCRYGG 1 cut(s) 486
BstF5I GGATG 3 cut(s) 76, 208, 645
BstFNI CGCG 3 cut(s) 233, 241, 265
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 3 cut(s) 316, 364, 596
BstMAI GTCTC 1 cut(s) 452
BstMBI GATC 3 cut(s) 313, 361, 593
BstNI CCWGG 3 cut(s) 61, 303, 421
BstSCI CCNGG 3 cut(s) 59, 301, 419
BstUI CGCG 3 cut(s) 233, 241, 265
BstV1I GCAGC 1 cut(s) 125
BstXI CCANNNNNNTGG 1 cut(s) 67
BtgI CCRYGG 1 cut(s) 486
BtsCI GGATG 3 cut(s) 76, 208, 645
BtsIMutI CAGTG 4 cut(s) 157, 344, 556, 610
CfoI GCGC 1 cut(s) 9
Cfr10I RCCGGY 1 cut(s) 352
CviAII CATG 2 cut(s) 327, 487
CviJI RGCY 7 cut(s) 116, 212, 352, 410, 446, 484, 646
CviKI_1 RGCY 7 cut(s) 116, 212, 352, 410, 446, 484, 646
DdeI CTNAG 1 cut(s) 117
DpnI GATC 3 cut(s) 315, 363, 595
DpnII GATC 3 cut(s) 313, 361, 593
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
EciI GGCGGA 1 cut(s) 548
Eco130I CCWWGG 1 cut(s) 486
Eco24I GRGCYC 1 cut(s) 486
Eco57I CTGAAG 2 cut(s) 368, 393
EcoRI GAATTC 1 cut(s) 286
EcoRII CCWGG 3 cut(s) 59, 301, 419
EcoT14I CCWWGG 1 cut(s) 486
EcoT38I GRGCYC 1 cut(s) 486
ErhI CCWWGG 1 cut(s) 486
FaeI CATG 2 cut(s) 330, 490
FaiI YATR 6 cut(s) 225, 318, 328, 407, 488, 669
FatI CATG 2 cut(s) 326, 486
FauI CCCGC 2 cut(s) 238, 258
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 3 cut(s) 83, 215, 652
FriOI GRGCYC 1 cut(s) 486
Fsp4HI GCNGC 1 cut(s) 114
GlaI GCGC 1 cut(s) 8
GluI GCNGC 1 cut(s) 114
GsuI CTGGAG 1 cut(s) 641
HapII CCGG 1 cut(s) 353
HhaI GCGC 1 cut(s) 9
Hin1II CATG 2 cut(s) 330, 490
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HinfI GANTC 3 cut(s) 260, 298, 522
HpaII CCGG 1 cut(s) 353
Hpy188I TCNGA 4 cut(s) 120, 292, 373, 481
Hpy188III TCNNGA 2 cut(s) 450, 658
Hpy99I CGWCG 2 cut(s) 35, 38
HpyAV CCTTC 3 cut(s) 204, 560, 584
HpyCH4III ACNGT 2 cut(s) 91, 665
HpyCH4V TGCA 5 cut(s) 86, 113, 163, 428, 470
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 2 cut(s) 330, 490
HspAI GCGC 1 cut(s) 7
Kzo9I GATC 3 cut(s) 313, 361, 593
LmnI GCTCC 2 cut(s) 481, 643
Lsp1109I GCAGC 1 cut(s) 125
LweI GCATC 2 cut(s) 150, 625
MaeIII GTNAC 3 cut(s) 342, 603, 676
MalI GATC 3 cut(s) 315, 363, 595
MboI GATC 3 cut(s) 313, 361, 593
MboII GAAGA 2 cut(s) 140, 386
MhlI GDGCHC 2 cut(s) 222, 486
MluCI AATT 2 cut(s) 23, 286
MmeI TCCRAC 1 cut(s) 459
MnlI CCTC 3 cut(s) 352, 370, 665
MseI TTAA 1 cut(s) 308
MspI CCGG 1 cut(s) 353
MspR9I CCNGG 3 cut(s) 61, 303, 421
MvaI CCWGG 3 cut(s) 61, 303, 421
MvnI CGCG 3 cut(s) 233, 241, 265
NcoI CCATGG 1 cut(s) 486
NdeII GATC 3 cut(s) 313, 361, 593
NlaIII CATG 2 cut(s) 330, 490
NlaIV GGNNCC 3 cut(s) 186, 483, 645
NmuCI GTSAC 2 cut(s) 342, 676
PasI CCCWGGG 1 cut(s) 420
PcsI WCGNNNNNNNCGW 1 cut(s) 578
PfeI GAWTC 3 cut(s) 260, 298, 522
PfoI TCCNGGA 1 cut(s) 59
PkrI GCNGC 1 cut(s) 115
Psp6I CCWGG 3 cut(s) 59, 301, 419
PspGI CCWGG 3 cut(s) 59, 301, 419
PspN4I GGNNCC 3 cut(s) 186, 483, 645
SaqAI TTAA 1 cut(s) 308
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 3 cut(s) 313, 361, 593
ScrFI CCNGG 3 cut(s) 61, 303, 421
SduI GDGCHC 2 cut(s) 222, 486
SetI ASST 4 cut(s) 118, 190, 214, 448
SfaNI GCATC 2 cut(s) 150, 625
Sse9I AATT 2 cut(s) 23, 286
SsiI CCGC 4 cut(s) 231, 241, 265, 533
StyD4I CCNGG 3 cut(s) 59, 301, 419
StyI CCWWGG 1 cut(s) 486
TaaI ACNGT 2 cut(s) 91, 665
TaqI TCGA 2 cut(s) 572, 596
TasI AATT 2 cut(s) 23, 286
TfiI GAWTC 3 cut(s) 260, 298, 522
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TscAI CASTG 4 cut(s) 157, 351, 556, 617
TseFI GTSAC 2 cut(s) 342, 676
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 2 cut(s) 342, 676
TspDTI ATGAA 3 cut(s) 17, 111, 315
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 4 cut(s) 157, 351, 556, 617
XapI RAATTY 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.