Rw6G039410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0015560
Physical Location & Seq
Reverse (-)
63416633 .. 63418411
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G039410.1

Sequence Viewer

Length: 585 bp
ATGGCGGAAGATCAGAGTGGTGGAATTGAGGCCTTGGAGCAAAGGCTAGCACAGGAACAGGCCTTGGCATGCCCCGGTGAGATGCAGAAAGGGGCTTTGCCGATGGAGCCGTTGGCATTGCCTGAGGAAAATGAGAAGGCTCTTGTGCTTTACAACCCTGCGAATACGTTTTACAAGACTCCTGCTTCCAAGGATTTCTCTATCATTGTGAATTCGGACTTGATTCCGGGTTTAAGAGACCATTTCTTTACACAGGGAAGTTTAAAGTGGTCAAAACCAGTAGAGGCTGAGCAAAGTGACAGAGAAGATTCAAATGGCTGTTTGGCTATTGTTCCTTGGGTTGAATCTAATTGGCCTCCATCCTCAAGTTCAGAGACACAGGCAGCCGGTCTTTCGGAGCCAATGCAAGCTGAAGAAGTTGAGATGATGGACACAGATGATGACAGTTCTGATGGCTCTAAATCCTCTGAGTTGGGTGTTATGATGGATGGATCTTTTGAATTACAACGCTGGCAGCAACAGCAACAGCTCCATTGTATGGAGCCACAGCTGCTCAATAACACTATCACCCCCATCACTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.48

Weight (kDa)

4.12

Isoelectric Point (pI)

56.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36450
malus_domestica MD08G1124200.v1.1 MD15G1102900.v1.1
prunus_persica Prupe.1G455900_v2.0.a1
pyrus_communis pycom08g10300 pycom15g09390
rosa_chinensis RchiOBHm_Chr6g0305451
rosa_laevigata RLG00000010891
rosa_multiflora Rmu_sc0007817.1_g000006
rosa_roxburghii Rroxscaffold_7G00162810
rosa_rugosa Rorug06G0340300
rosa_samantha Rh6AG452400 Rh6BG449400 Rh6CG466100 Rh6DG452800
rosa_wichuraiana Rw6G039410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 538, 579
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 499
AcsI RAATTY 1 cut(s) 211
AcuI CTGAAG 1 cut(s) 432
AfiI CCNNNNNNNGG 2 cut(s) 538, 579
AgsI TTSAA 3 cut(s) 312, 344, 500
AluBI AGCT 3 cut(s) 410, 529, 550
AluI AGCT 3 cut(s) 410, 529, 550
Alw26I GTCTC 2 cut(s) 231, 368
AlwI GGATC 1 cut(s) 499
AoxI GGCC 3 cut(s) 30, 60, 353
ApeKI GCWGC 3 cut(s) 383, 514, 550
ApoI RAATTY 1 cut(s) 211
AsuC2I CCSGG 2 cut(s) 75, 228
AsuHPI GGTGA 2 cut(s) 89, 559
AsuNHI GCTAGC 1 cut(s) 46
AxyI CCTNAGG 1 cut(s) 123
BbvI GCAGC 3 cut(s) 395, 526, 537
BccI CCATC 7 cut(s) 97, 367, 421, 446, 478, 482, 581
BceAI ACGGC 1 cut(s) 94
BcnI CCSGG 2 cut(s) 75, 228
BcoDI GTCTC 2 cut(s) 231, 368
BfaI CTAG 1 cut(s) 47
BisI GCNGC 3 cut(s) 384, 515, 551
BlpI GCTNAGC 1 cut(s) 288
BlsI GCNGC 3 cut(s) 385, 516, 552
Bme1390I CCNGG 2 cut(s) 75, 228
BmiI GGNNCC 3 cut(s) 108, 399, 543
BmrFI CCNGG 2 cut(s) 75, 228
BmsI GCATC 1 cut(s) 72
BmtI GCTAGC 1 cut(s) 50
Bpu1102I GCTNAGC 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 349
BpuMI CCSGG 2 cut(s) 75, 228
BsaI GGTCTC 1 cut(s) 231
BsaJI CCNNGG 5 cut(s) 33, 63, 73, 189, 335
Bsc4I CCNNNNNNNGG 2 cut(s) 538, 579
Bse118I RCCGGY 1 cut(s) 386
Bse1I ACTGG 1 cut(s) 278
Bse21I CCTNAGG 1 cut(s) 123
Bse3DI GCAATG 1 cut(s) 116
BseDI CCNNGG 5 cut(s) 33, 63, 73, 189, 335
BseGI GGATG 2 cut(s) 359, 493
BseLI CCNNNNNNNGG 2 cut(s) 538, 579
BseMI GCAATG 1 cut(s) 116
BseMII CTCAG 3 cut(s) 114, 279, 459
BseNI ACTGG 1 cut(s) 278
BseXI GCAGC 3 cut(s) 395, 526, 537
BshFI GGCC 3 cut(s) 32, 62, 355
BsiSI CCGG 3 cut(s) 75, 227, 387
BslI CCNNNNNNNGG 2 cut(s) 538, 579
BsmAI GTCTC 2 cut(s) 231, 368
BsnI GGCC 3 cut(s) 32, 62, 355
Bso31I GGTCTC 1 cut(s) 231
Bsp143I GATC 2 cut(s) 10, 491
Bsp1720I GCTNAGC 1 cut(s) 288
BspACI CCGC 1 cut(s) 5
BspANI GGCC 3 cut(s) 32, 62, 355
BspCNI CTCAG 3 cut(s) 115, 280, 460
BspLI GGNNCC 3 cut(s) 108, 399, 543
BspOI GCTAGC 1 cut(s) 50
BspPI GGATC 1 cut(s) 499
BspTNI GGTCTC 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 116
BsrFI RCCGGY 1 cut(s) 386
BsrI ACTGG 1 cut(s) 278
BssAI RCCGGY 1 cut(s) 386
BssECI CCNNGG 5 cut(s) 33, 63, 73, 189, 335
BssMI GATC 2 cut(s) 10, 491
BssT1I CCWWGG 4 cut(s) 33, 63, 189, 335
Bst4CI ACNGT 1 cut(s) 446
BstC8I GCNNGC 4 cut(s) 48, 70, 408, 512
BstDEI CTNAG 3 cut(s) 123, 288, 468
BstF5I GGATG 2 cut(s) 359, 493
BstKTI GATC 2 cut(s) 13, 494
BstMAI GTCTC 2 cut(s) 231, 368
BstMBI GATC 2 cut(s) 10, 491
BstMWI GCNNNNNNNGC 3 cut(s) 106, 520, 550
BstNSI RCATGY 1 cut(s) 72
BstSCI CCNGG 2 cut(s) 73, 226
BstV1I GCAGC 3 cut(s) 395, 526, 537
BstX2I RGATCY 1 cut(s) 491
BstYI RGATCY 1 cut(s) 491
Bsu36I CCTNAGG 1 cut(s) 123
BsuRI GGCC 3 cut(s) 32, 62, 355
BtsCI GGATG 2 cut(s) 359, 493
Cac8I GCNNGC 4 cut(s) 48, 70, 408, 512
Cfr10I RCCGGY 1 cut(s) 386
CviAII CATG 1 cut(s) 69
DdeI CTNAG 3 cut(s) 123, 288, 468
DpnI GATC 2 cut(s) 12, 493
DpnII GATC 2 cut(s) 10, 491
DraI TTTAAA 1 cut(s) 264
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 4 cut(s) 33, 63, 189, 335
Eco147I AGGCCT 2 cut(s) 32, 62
Eco31I GGTCTC 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 432
Eco81I CCTNAGG 1 cut(s) 123
EcoRI GAATTC 1 cut(s) 211
EcoT14I CCWWGG 4 cut(s) 33, 63, 189, 335
ErhI CCWWGG 4 cut(s) 33, 63, 189, 335
FaeI CATG 1 cut(s) 72
FaiI YATR 3 cut(s) 70, 482, 539
FatI CATG 1 cut(s) 68
Fnu4HI GCNGC 3 cut(s) 384, 515, 551
FokI GGATG 2 cut(s) 346, 500
Fsp4HI GCNGC 3 cut(s) 384, 515, 551
FspBI CTAG 1 cut(s) 47
GluI GCNGC 3 cut(s) 384, 515, 551
HaeIII GGCC 3 cut(s) 32, 62, 355
HapII CCGG 3 cut(s) 75, 227, 387
Hin1II CATG 1 cut(s) 72
HinfI GANTC 4 cut(s) 178, 223, 308, 344
HpaII CCGG 3 cut(s) 75, 227, 387
HphI GGTGA 2 cut(s) 89, 559
Hpy188I TCNGA 6 cut(s) 15, 217, 373, 397, 451, 469
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 1 cut(s) 446
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 2 cut(s) 85, 406
HpyF10VI GCNNNNNNNGC 3 cut(s) 106, 520, 550
HpyF3I CTNAG 3 cut(s) 123, 288, 468
HpySE526I ACGT 1 cut(s) 167
Hsp92II CATG 1 cut(s) 72
Kzo9I GATC 2 cut(s) 10, 491
LmnI GCTCC 5 cut(s) 37, 106, 397, 534, 541
Lsp1109I GCAGC 3 cut(s) 395, 526, 537
LweI GCATC 1 cut(s) 72
MaeI CTAG 1 cut(s) 47
MaeII ACGT 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 296
MalI GATC 2 cut(s) 12, 493
MboI GATC 2 cut(s) 10, 491
MboII GAAGA 3 cut(s) 20, 317, 425
MflI RGATCY 1 cut(s) 491
MluCI AATT 4 cut(s) 24, 211, 349, 500
MlyI GAGTC 1 cut(s) 172
MnlI CCTC 6 cut(s) 22, 118, 277, 366, 373, 475
MseI TTAA 2 cut(s) 233, 263
MspA1I CMGCKG 1 cut(s) 550
MspI CCGG 3 cut(s) 75, 227, 387
MspR9I CCNGG 2 cut(s) 75, 228
MwoI GCNNNNNNNGC 3 cut(s) 106, 520, 550
NciI CCSGG 2 cut(s) 75, 228
NdeII GATC 2 cut(s) 10, 491
NheI GCTAGC 1 cut(s) 46
NlaIII CATG 1 cut(s) 72
NlaIV GGNNCC 3 cut(s) 108, 399, 543
NmuCI GTSAC 1 cut(s) 296
NspI RCATGY 1 cut(s) 72
PaeI GCATGC 1 cut(s) 72
PceI AGGCCT 2 cut(s) 32, 62
PfeI GAWTC 3 cut(s) 223, 308, 344
PflMI CCANNNNNTGG 2 cut(s) 538, 579
PkrI GCNGC 3 cut(s) 385, 516, 552
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
PspN4I GGNNCC 3 cut(s) 108, 399, 543
PsuI RGATCY 1 cut(s) 491
PvuII CAGCTG 1 cut(s) 550
SaqAI TTAA 2 cut(s) 233, 263
SatI GCNGC 3 cut(s) 384, 515, 551
Sau3AI GATC 2 cut(s) 10, 491
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 2 cut(s) 75, 228
SetI ASST 4 cut(s) 170, 412, 531, 552
SfaNI GCATC 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 364
SmoI CTYRAG 1 cut(s) 364
SphI GCATGC 1 cut(s) 72
Sse9I AATT 4 cut(s) 24, 211, 349, 500
SseBI AGGCCT 2 cut(s) 32, 62
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 47
StuI AGGCCT 2 cut(s) 32, 62
StyD4I CCNGG 2 cut(s) 73, 226
StyI CCWWGG 4 cut(s) 33, 63, 189, 335
TaaI ACNGT 1 cut(s) 446
TaiI ACGT 1 cut(s) 170
TasI AATT 4 cut(s) 24, 211, 349, 500
TfiI GAWTC 3 cut(s) 223, 308, 344
Tru1I TTAA 2 cut(s) 233, 263
Tru9I TTAA 2 cut(s) 233, 263
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 3 cut(s) 383, 514, 550
Tsp45I GTSAC 1 cut(s) 296
Van91I CCANNNNNTGG 2 cut(s) 538, 579
XapI RAATTY 1 cut(s) 211
XceI RCATGY 1 cut(s) 72
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.