Rmu_sc0007817.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007817.1
OG0015560
Physical Location & Seq
Forward (+)
25925 .. 27329
1405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007817.1_g000006.1.cds

Sequence Viewer

Length: 819 bp
atgaagcggaaagacctcttattcgacgacatgtcgtctccgtcatccaagtcccggcgactggatgctaacttcatcggagccgtgaacggagatggaagtagtgcattccaggtgcttgatcaaacgccaccacagaatcggcctttgaagcgaaaagaagcgttcgacgacttgttgcctcatttctctaaatccaggagactggatgctgatttgttttccactatggcggaagatcagagtggtggaattgaggccttggagcaaaggctagcacaggaacaggccttggcatgccccggtgagatgcagaaaggggctttgccgatggagccgttggcattgcctgaggaaaatgagaaggctcttgtgctttacaaccctgcgaatacgttctacaagactcctgcttccaaggatttctctatcattgtgaattcggacttgattccgggtttaagagaccatatctttacacagggaagtttaaagtggtcaaaaccagtagaggctgaacaaagtgacagagaagattcaaatggctgtttggctattgttccttgggttgaatctaattggcctccatcctcaagttcagagacacaggcagccggtctttcggagccaatgcaagctgaagaagttgagatgatggacacagatgatgacagttctgatggctctaaatcctctgagttaggtgttatgatggatggatcttttgaattacaacgctggcagcagcagcaacagcaccagctccattgtatggagccacagctgctgaataacactatcacccccatcacttggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

30.28

Weight (kDa)

4.5

Isoelectric Point (pI)

60.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36450
malus_domestica MD08G1124200.v1.1 MD15G1102900.v1.1
prunus_persica Prupe.1G455900_v2.0.a1
pyrus_communis pycom08g10300 pycom15g09390
rosa_chinensis RchiOBHm_Chr6g0305451
rosa_laevigata RLG00000010891
rosa_multiflora Rmu_sc0007817.1_g000006
rosa_roxburghii Rroxscaffold_7G00162810
rosa_rugosa Rorug06G0340300
rosa_samantha Rh6AG452400 Rh6BG449400 Rh6CG466100 Rh6DG452800
rosa_wichuraiana Rw6G039410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 772, 813
AciI CCGC 2 cut(s) 7, 233
AclWI GGATC 1 cut(s) 727
AcsI RAATTY 1 cut(s) 439
AcuI CTGAAG 1 cut(s) 660
AfiI CCNNNNNNNGG 4 cut(s) 54, 61, 772, 813
AflIII ACRYGT 1 cut(s) 30
AgsI TTSAA 4 cut(s) 151, 540, 572, 728
AhdI GACNNNNNGTC 2 cut(s) 31, 34
AjnI CCWGG 2 cut(s) 111, 197
AluBI AGCT 3 cut(s) 638, 763, 784
AluI AGCT 3 cut(s) 638, 763, 784
Alw26I GTCTC 4 cut(s) 42, 196, 459, 596
AlwI GGATC 1 cut(s) 727
AlwNI CAGNNNCTG 1 cut(s) 787
AoxI GGCC 4 cut(s) 143, 258, 288, 581
ApeKI GCWGC 5 cut(s) 611, 742, 745, 748, 784
ApoI RAATTY 1 cut(s) 439
ArsI GACNNNNNNTTYG 1 cut(s) 37
Asp700I GAANNNNTTC 1 cut(s) 395
AsuC2I CCSGG 3 cut(s) 55, 303, 456
AsuHPI GGTGA 2 cut(s) 317, 793
AsuNHI GCTAGC 1 cut(s) 274
AxyI CCTNAGG 1 cut(s) 351
BbvI GCAGC 5 cut(s) 623, 754, 757, 760, 771
BccI CCATC 8 cut(s) 89, 325, 595, 649, 674, 706, 710, 815
BceAI ACGGC 2 cut(s) 68, 322
BciT130I CCWGG 2 cut(s) 113, 199
BclI TGATCA 1 cut(s) 121
BcnI CCSGG 3 cut(s) 55, 303, 456
BcoDI GTCTC 4 cut(s) 42, 196, 459, 596
BfaI CTAG 1 cut(s) 275
BisI GCNGC 5 cut(s) 612, 743, 746, 749, 785
BlsI GCNGC 5 cut(s) 613, 744, 747, 750, 786
Bme1390I CCNGG 5 cut(s) 55, 113, 199, 303, 456
BmeRI GACNNNNNGTC 2 cut(s) 31, 34
BmiI GGNNCC 4 cut(s) 82, 336, 627, 777
BmrFI CCNGG 5 cut(s) 55, 113, 199, 303, 456
BmsI GCATC 3 cut(s) 55, 199, 300
BmtI GCTAGC 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 577
BpuMI CCSGG 3 cut(s) 55, 303, 456
BsaI GGTCTC 1 cut(s) 459
BsaJI CCNNGG 5 cut(s) 261, 291, 301, 417, 563
Bsc4I CCNNNNNNNGG 4 cut(s) 54, 61, 772, 813
Bse118I RCCGGY 1 cut(s) 614
Bse1I ACTGG 3 cut(s) 66, 210, 506
Bse21I CCTNAGG 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 344
BseBI CCWGG 2 cut(s) 113, 199
BseDI CCNNGG 5 cut(s) 261, 291, 301, 417, 563
BseGI GGATG 5 cut(s) 44, 70, 214, 587, 721
BseLI CCNNNNNNNGG 4 cut(s) 54, 61, 772, 813
BseMI GCAATG 1 cut(s) 344
BseMII CTCAG 2 cut(s) 342, 687
BseNI ACTGG 3 cut(s) 66, 210, 506
BseXI GCAGC 5 cut(s) 623, 754, 757, 760, 771
BshFI GGCC 4 cut(s) 145, 260, 290, 583
BsiSI CCGG 4 cut(s) 55, 303, 455, 615
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 4 cut(s) 54, 61, 772, 813
BsmAI GTCTC 4 cut(s) 42, 196, 459, 596
BsmBI CGTCTC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 37
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 4 cut(s) 145, 260, 290, 583
Bso31I GGTCTC 1 cut(s) 459
Bsp143I GATC 3 cut(s) 121, 238, 719
BspACI CCGC 2 cut(s) 7, 233
BspANI GGCC 4 cut(s) 145, 260, 290, 583
BspCNI CTCAG 2 cut(s) 343, 688
BspLI GGNNCC 4 cut(s) 82, 336, 627, 777
BspOI GCTAGC 1 cut(s) 278
BspPI GGATC 1 cut(s) 727
BspTNI GGTCTC 1 cut(s) 459
BsrDI GCAATG 1 cut(s) 344
BsrFI RCCGGY 1 cut(s) 614
BsrI ACTGG 3 cut(s) 66, 210, 506
BssAI RCCGGY 1 cut(s) 614
BssECI CCNNGG 5 cut(s) 261, 291, 301, 417, 563
BssMI GATC 3 cut(s) 121, 238, 719
BssT1I CCWWGG 4 cut(s) 261, 291, 417, 563
Bst2UI CCWGG 2 cut(s) 113, 199
Bst4CI ACNGT 1 cut(s) 674
BstC8I GCNNGC 4 cut(s) 276, 298, 636, 740
BstDEI CTNAG 2 cut(s) 351, 696
BstF5I GGATG 5 cut(s) 44, 70, 214, 587, 721
BstKTI GATC 3 cut(s) 124, 241, 722
BstMAI GTCTC 4 cut(s) 42, 196, 459, 596
BstMBI GATC 3 cut(s) 121, 238, 719
BstMWI GCNNNNNNNGC 5 cut(s) 151, 334, 748, 754, 784
BstNI CCWGG 2 cut(s) 113, 199
BstNSI RCATGY 2 cut(s) 34, 300
BstSCI CCNGG 5 cut(s) 53, 111, 197, 301, 454
BstV1I GCAGC 5 cut(s) 623, 754, 757, 760, 771
BstX2I RGATCY 1 cut(s) 719
BstXI CCANNNNNNTGG 1 cut(s) 205
BstYI RGATCY 1 cut(s) 719
Bsu36I CCTNAGG 1 cut(s) 351
BsuRI GGCC 4 cut(s) 145, 260, 290, 583
BtsCI GGATG 5 cut(s) 44, 70, 214, 587, 721
Cac8I GCNNGC 4 cut(s) 276, 298, 636, 740
CaiI CAGNNNCTG 1 cut(s) 787
Cfr10I RCCGGY 1 cut(s) 614
CviAII CATG 2 cut(s) 31, 297
DdeI CTNAG 2 cut(s) 351, 696
DpnI GATC 3 cut(s) 123, 240, 721
DpnII GATC 3 cut(s) 121, 238, 719
DraI TTTAAA 1 cut(s) 492
DriI GACNNNNNGTC 2 cut(s) 31, 34
Eam1105I GACNNNNNGTC 2 cut(s) 31, 34
EciI GGCGGA 1 cut(s) 248
Eco130I CCWWGG 4 cut(s) 261, 291, 417, 563
Eco147I AGGCCT 2 cut(s) 260, 290
Eco31I GGTCTC 1 cut(s) 459
Eco57I CTGAAG 1 cut(s) 660
Eco81I CCTNAGG 1 cut(s) 351
EcoRI GAATTC 1 cut(s) 439
EcoRII CCWGG 2 cut(s) 111, 197
EcoT14I CCWWGG 4 cut(s) 261, 291, 417, 563
ErhI CCWWGG 4 cut(s) 261, 291, 417, 563
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 2 cut(s) 34, 300
FaiI YATR 6 cut(s) 32, 230, 298, 471, 710, 773
FaqI GGGAC 1 cut(s) 37
FatI CATG 2 cut(s) 30, 296
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 5 cut(s) 612, 743, 746, 749, 785
FokI GGATG 5 cut(s) 31, 77, 221, 574, 728
Fsp4HI GCNGC 5 cut(s) 612, 743, 746, 749, 785
FspBI CTAG 1 cut(s) 275
GluI GCNGC 5 cut(s) 612, 743, 746, 749, 785
HaeIII GGCC 4 cut(s) 145, 260, 290, 583
HapII CCGG 4 cut(s) 55, 303, 455, 615
Hin1II CATG 2 cut(s) 34, 300
HinfI GANTC 5 cut(s) 139, 406, 451, 536, 572
HpaII CCGG 4 cut(s) 55, 303, 455, 615
HphI GGTGA 2 cut(s) 317, 793
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 7 cut(s) 80, 243, 445, 601, 625, 679, 697
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 2 cut(s) 29, 173
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 1 cut(s) 674
HpyCH4IV ACGT 1 cut(s) 395
HpyCH4V TGCA 3 cut(s) 107, 313, 634
HpyF10VI GCNNNNNNNGC 5 cut(s) 151, 334, 748, 754, 784
HpyF3I CTNAG 2 cut(s) 351, 696
HpySE526I ACGT 1 cut(s) 395
Hsp92II CATG 2 cut(s) 34, 300
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 3 cut(s) 121, 238, 719
LmnI GCTCC 6 cut(s) 80, 265, 334, 625, 768, 775
Lsp1109I GCAGC 5 cut(s) 623, 754, 757, 760, 771
LweI GCATC 3 cut(s) 55, 199, 300
MaeI CTAG 1 cut(s) 275
MaeII ACGT 1 cut(s) 395
MaeIII GTNAC 1 cut(s) 524
MalI GATC 3 cut(s) 123, 240, 721
MboI GATC 3 cut(s) 121, 238, 719
MboII GAAGA 3 cut(s) 248, 545, 653
MflI RGATCY 1 cut(s) 719
MluCI AATT 4 cut(s) 252, 439, 577, 728
MlyI GAGTC 1 cut(s) 400
MnlI CCTC 8 cut(s) 26, 192, 250, 346, 505, 594, 601, 703
MroXI GAANNNNTTC 1 cut(s) 395
MseI TTAA 2 cut(s) 461, 491
MspA1I CMGCKG 1 cut(s) 784
MspI CCGG 4 cut(s) 55, 303, 455, 615
MspR9I CCNGG 5 cut(s) 55, 113, 199, 303, 456
Mva1269I GAATGC 1 cut(s) 107
MvaI CCWGG 2 cut(s) 113, 199
MwoI GCNNNNNNNGC 5 cut(s) 151, 334, 748, 754, 784
NciI CCSGG 3 cut(s) 55, 303, 456
NdeII GATC 3 cut(s) 121, 238, 719
NheI GCTAGC 1 cut(s) 274
NlaIII CATG 2 cut(s) 34, 300
NlaIV GGNNCC 4 cut(s) 82, 336, 627, 777
NmuCI GTSAC 1 cut(s) 524
NspI RCATGY 2 cut(s) 34, 300
PaeI GCATGC 1 cut(s) 300
PceI AGGCCT 2 cut(s) 260, 290
PciI ACATGT 1 cut(s) 30
PctI GAATGC 1 cut(s) 107
PdmI GAANNNNTTC 1 cut(s) 395
PfeI GAWTC 4 cut(s) 139, 451, 536, 572
PflMI CCANNNNNTGG 2 cut(s) 772, 813
PfoI TCCNGGA 1 cut(s) 197
PkrI GCNGC 5 cut(s) 613, 744, 747, 750, 786
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
PscI ACATGT 1 cut(s) 30
Psp6I CCWGG 2 cut(s) 111, 197
PspGI CCWGG 2 cut(s) 111, 197
PspN4I GGNNCC 4 cut(s) 82, 336, 627, 777
PstNI CAGNNNCTG 1 cut(s) 787
PsuI RGATCY 1 cut(s) 719
PvuII CAGCTG 1 cut(s) 784
SaqAI TTAA 2 cut(s) 461, 491
SatI GCNGC 5 cut(s) 612, 743, 746, 749, 785
Sau3AI GATC 3 cut(s) 121, 238, 719
SchI GAGTC 1 cut(s) 400
ScrFI CCNGG 5 cut(s) 55, 113, 199, 303, 456
SetI ASST 7 cut(s) 18, 117, 398, 640, 706, 765, 786
SfaNI GCATC 3 cut(s) 55, 199, 300
SmlI CTYRAG 1 cut(s) 592
SmoI CTYRAG 1 cut(s) 592
SphI GCATGC 1 cut(s) 300
Sse9I AATT 4 cut(s) 252, 439, 577, 728
SseBI AGGCCT 2 cut(s) 260, 290
SsiI CCGC 2 cut(s) 7, 233
SspMI CTAG 1 cut(s) 275
StuI AGGCCT 2 cut(s) 260, 290
StyD4I CCNGG 5 cut(s) 53, 111, 197, 301, 454
StyI CCWWGG 4 cut(s) 261, 291, 417, 563
TaaI ACNGT 1 cut(s) 674
TaiI ACGT 1 cut(s) 398
TaqI TCGA 2 cut(s) 24, 168
TasI AATT 4 cut(s) 252, 439, 577, 728
TfiI GAWTC 4 cut(s) 139, 451, 536, 572
Tru1I TTAA 2 cut(s) 461, 491
Tru9I TTAA 2 cut(s) 461, 491
TseFI GTSAC 1 cut(s) 524
TseI GCWGC 5 cut(s) 611, 742, 745, 748, 784
Tsp45I GTSAC 1 cut(s) 524
TspDTI ATGAA 2 cut(s) 17, 64
TspGWI ACGGA 2 cut(s) 30, 105
Van91I CCANNNNNTGG 2 cut(s) 772, 813
XapI RAATTY 1 cut(s) 439
XceI RCATGY 2 cut(s) 34, 300
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.