Prupe.1G455900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015560
Physical Location & Seq
Forward (+)
38255864 .. 38258187
2324 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G455900.1

Sequence Viewer

Length: 663 bp
ATGAAGCGCAAAGACCTTGATGATGACATAGACGACGCCTTCTACTTTCCTTCCTCTAAATCCAGGAGACTGGATGCTGACTTATTTGCAACTGTAAATGAAGACCCAAGAAGTGCCGCTCAGGTGTTTGAAGAAAGGCCATCTGAAGGCACCATTTTGATGCAAACAGATGATTTGCCGAAGGACCCATTGCCTTCAGGTGATGAGAAAGCAATTGTGCTCTATAACCCCGCGAACATGCCGCCGCTTCTCAAATCCCCCGACTCGCGGGATTTCTCTCTGATTGTGAATTCAGATTTGATTCCGGGTTTAAGGGATCATATCTATTCATGGGGAAATTCAAAGTCGCTGAAACCGGCAGAGGATCGTGTGGCTGAAGAGGAAAACAAAGAAGTTTCAAATGGCTGTTTGGCAGTTGTTCCCTGGGTTGCATCTAAGTTCCCTCTAGCATCAAGAGAACAGGCAGCGAGTCAGTCAGAGGAGCCCATGGAAGCTGAGGAAGTTGAAATGATGGACACAGATAACAACGGTTACAATGCCGGGGAAGCTCCCGGGTTTGGCAGAATGATGGAAGGATCGGGTGGGTTACAACACTGGCAGCAAAAGCAGCTACATTGGTTGGAGCCAAAGCTCGTCCAAAATAATTATACTCCTGTCACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

24.6

Weight (kDa)

4.48

Isoelectric Point (pI)

53.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36450
malus_domestica MD08G1124200.v1.1 MD15G1102900.v1.1
prunus_persica Prupe.1G455900_v2.0.a1
pyrus_communis pycom08g10300 pycom15g09390
rosa_chinensis RchiOBHm_Chr6g0305451
rosa_laevigata RLG00000010891
rosa_multiflora Rmu_sc0007817.1_g000006
rosa_roxburghii Rroxscaffold_7G00162810
rosa_rugosa Rorug06G0340300
rosa_samantha Rh6AG452400 Rh6BG449400 Rh6CG466100 Rh6DG452800
rosa_wichuraiana Rw6G039410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 149
AccBSI CCGCTC 1 cut(s) 119
AccII CGCG 2 cut(s) 233, 268
AciI CCGC 5 cut(s) 117, 231, 242, 245, 268
AclWI GGATC 3 cut(s) 324, 372, 583
AcsI RAATTY 2 cut(s) 289, 337
AcuI CTGAAG 3 cut(s) 165, 180, 396
AcyI GRCGYC 1 cut(s) 36
AfiI CCNNNNNNNGG 3 cut(s) 146, 267, 557
AgsI TTSAA 4 cut(s) 131, 342, 399, 506
AjnI CCWGG 2 cut(s) 62, 422
AluBI AGCT 4 cut(s) 494, 548, 610, 631
AluI AGCT 4 cut(s) 494, 548, 610, 631
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 3 cut(s) 324, 372, 583
Ama87I CYCGRG 1 cut(s) 551
AoxI GGCC 1 cut(s) 137
ApeKI GCWGC 3 cut(s) 464, 598, 607
ApoI RAATTY 2 cut(s) 289, 337
AspLEI GCGC 1 cut(s) 9
AspS9I GGNCC 1 cut(s) 184
AsuC2I CCSGG 4 cut(s) 306, 541, 552, 553
AsuHPI GGTGA 1 cut(s) 212
AvaI CYCGRG 1 cut(s) 551
AvaII GGWCC 1 cut(s) 184
BanI GGYRCC 1 cut(s) 149
BanII GRGCYC 1 cut(s) 486
BbsI GAAGAC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 222
BbvCI CCTCAGC 1 cut(s) 495
BbvI GCAGC 3 cut(s) 476, 610, 619
BccI CCATC 3 cut(s) 148, 505, 562
BciT130I CCWGG 2 cut(s) 64, 424
BcnI CCSGG 4 cut(s) 306, 541, 552, 553
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 1 cut(s) 446
BisI GCNGC 6 cut(s) 117, 242, 245, 465, 599, 608
BlsI GCNGC 6 cut(s) 118, 243, 246, 466, 600, 609
Bme1390I CCNGG 6 cut(s) 64, 306, 424, 541, 552, 553
Bme18I GGWCC 1 cut(s) 184
BmeT110I CYCGRG 1 cut(s) 551
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 4 cut(s) 151, 186, 483, 624
BmrFI CCNGG 6 cut(s) 64, 306, 424, 541, 552, 553
BmsI GCATC 4 cut(s) 64, 150, 440, 458
BpiI GAAGAC 1 cut(s) 108
Bpu10I CCTNAGC 2 cut(s) 120, 495
BpuMI CCSGG 4 cut(s) 306, 541, 552, 553
BsaAI YACGTR 1 cut(s) 660
BsaHI GRCGYC 1 cut(s) 36
BsaJI CCNNGG 5 cut(s) 422, 423, 486, 540, 551
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 267, 557
Bse118I RCCGGY 1 cut(s) 355
Bse1I ACTGG 2 cut(s) 75, 599
Bse3DI GCAATG 1 cut(s) 188
BseBI CCWGG 2 cut(s) 64, 424
BseDI CCNNGG 5 cut(s) 422, 423, 486, 540, 551
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 3 cut(s) 146, 267, 557
BseMI GCAATG 1 cut(s) 188
BseMII CTCAG 2 cut(s) 134, 486
BseNI ACTGG 2 cut(s) 75, 599
BseRI GAGGAG 1 cut(s) 494
BseXI GCAGC 3 cut(s) 476, 610, 619
Bsh1236I CGCG 2 cut(s) 233, 268
BshFI GGCC 1 cut(s) 139
BshNI GGYRCC 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 551
BsiSI CCGG 4 cut(s) 305, 356, 540, 552
BslI CCNNNNNNNGG 3 cut(s) 146, 267, 557
BsmAI GTCTC 1 cut(s) 61
BsnI GGCC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 551
Bsp1286I GDGCHC 2 cut(s) 222, 486
Bsp143I GATC 3 cut(s) 316, 364, 575
Bsp19I CCATGG 1 cut(s) 486
BspACI CCGC 5 cut(s) 117, 231, 242, 245, 268
BspANI GGCC 1 cut(s) 139
BspCNI CTCAG 2 cut(s) 133, 487
BspFNI CGCG 2 cut(s) 233, 268
BspLI GGNNCC 4 cut(s) 151, 186, 483, 624
BspPI GGATC 3 cut(s) 324, 372, 583
BspT107I GGYRCC 1 cut(s) 149
BsrBI CCGCTC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 188
BsrFI RCCGGY 1 cut(s) 355
BsrI ACTGG 2 cut(s) 75, 599
BssAI RCCGGY 1 cut(s) 355
BssECI CCNNGG 5 cut(s) 422, 423, 486, 540, 551
BssMI GATC 3 cut(s) 316, 364, 575
BssNI GRCGYC 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 486
Bst2UI CCWGG 2 cut(s) 64, 424
Bst4CI ACNGT 2 cut(s) 94, 530
Bst6I CTCTTC 1 cut(s) 372
BstACI GRCGYC 1 cut(s) 36
BstBAI YACGTR 1 cut(s) 660
BstDEI CTNAG 3 cut(s) 120, 435, 495
BstDSI CCRYGG 1 cut(s) 486
BstF5I GGATG 1 cut(s) 79
BstFNI CGCG 2 cut(s) 233, 268
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 3 cut(s) 319, 367, 578
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 3 cut(s) 316, 364, 575
BstMWI GCNNNNNNNGC 3 cut(s) 545, 604, 607
BstNI CCWGG 2 cut(s) 64, 424
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 6 cut(s) 62, 304, 422, 539, 550, 551
BstUI CGCG 2 cut(s) 233, 268
BstV1I GCAGC 3 cut(s) 476, 610, 619
BstV2I GAAGAC 1 cut(s) 108
BstXI CCANNNNNNTGG 1 cut(s) 70
BsuRI GGCC 1 cut(s) 139
BtgI CCRYGG 1 cut(s) 486
BtsCI GGATG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 592
CfoI GCGC 1 cut(s) 9
Cfr10I RCCGGY 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 184
Cfr9I CCCGGG 1 cut(s) 551
CseI GACGC 1 cut(s) 44
CviAII CATG 3 cut(s) 238, 330, 487
CviJI RGCY 9 cut(s) 139, 374, 405, 484, 494, 548, 610, 625, 631
CviKI_1 RGCY 9 cut(s) 139, 374, 405, 484, 494, 548, 610, 625, 631
DdeI CTNAG 3 cut(s) 120, 435, 495
DpnI GATC 3 cut(s) 318, 366, 577
DpnII GATC 3 cut(s) 316, 364, 575
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 486
Eco24I GRGCYC 1 cut(s) 486
Eco47I GGWCC 1 cut(s) 184
Eco57I CTGAAG 3 cut(s) 165, 180, 396
Eco88I CYCGRG 1 cut(s) 551
EcoO109I RGGNCCY 1 cut(s) 184
EcoRI GAATTC 1 cut(s) 289
EcoRII CCWGG 2 cut(s) 62, 422
EcoT14I CCWWGG 1 cut(s) 486
EcoT38I GRGCYC 1 cut(s) 486
ErhI CCWWGG 1 cut(s) 486
FaeI CATG 3 cut(s) 241, 333, 490
FaiI YATR 7 cut(s) 29, 225, 239, 321, 331, 488, 648
FatI CATG 3 cut(s) 237, 329, 486
FauI CCCGC 2 cut(s) 238, 261
Fnu4HI GCNGC 6 cut(s) 117, 242, 245, 465, 599, 608
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 486
Fsp4HI GCNGC 6 cut(s) 117, 242, 245, 465, 599, 608
FspBI CTAG 1 cut(s) 446
GlaI GCGC 1 cut(s) 8
GluI GCNGC 6 cut(s) 117, 242, 245, 465, 599, 608
HaeIII GGCC 1 cut(s) 139
HapII CCGG 4 cut(s) 305, 356, 540, 552
HgaI GACGC 1 cut(s) 44
HhaI GCGC 1 cut(s) 9
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 3 cut(s) 241, 333, 490
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HinfI GANTC 3 cut(s) 263, 301, 469
HpaII CCGG 4 cut(s) 305, 356, 540, 552
HphI GGTGA 1 cut(s) 212
Hpy188I TCNGA 4 cut(s) 145, 282, 295, 478
Hpy188III TCNNGA 1 cut(s) 453
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 6 cut(s) 49, 60, 140, 175, 204, 566
HpyCH4III ACNGT 2 cut(s) 94, 530
HpyCH4IV ACGT 1 cut(s) 659
HpyCH4V TGCA 3 cut(s) 89, 163, 431
HpyF10VI GCNNNNNNNGC 3 cut(s) 545, 604, 607
HpyF3I CTNAG 3 cut(s) 120, 435, 495
HpySE526I ACGT 1 cut(s) 659
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 3 cut(s) 241, 333, 490
HspAI GCGC 1 cut(s) 7
Kzo9I GATC 3 cut(s) 316, 364, 575
LmnI GCTCC 3 cut(s) 481, 553, 622
Lsp1109I GCAGC 3 cut(s) 476, 610, 619
LweI GCATC 4 cut(s) 64, 150, 440, 458
MaeI CTAG 1 cut(s) 446
MaeII ACGT 1 cut(s) 659
MaeIII GTNAC 3 cut(s) 530, 585, 655
MalI GATC 3 cut(s) 318, 366, 577
MbiI CCGCTC 1 cut(s) 119
MboI GATC 3 cut(s) 316, 364, 575
MboII GAAGA 3 cut(s) 113, 143, 389
MfeI CAATTG 1 cut(s) 213
MhlI GDGCHC 2 cut(s) 222, 486
MluCI AATT 4 cut(s) 213, 289, 337, 643
MlyI GAGTC 2 cut(s) 257, 478
MmeI TCCRAC 1 cut(s) 600
MnlI CCTC 6 cut(s) 64, 355, 373, 453, 472, 490
MseI TTAA 1 cut(s) 311
MslI CAYNNNNRTG 1 cut(s) 158
MspI CCGG 4 cut(s) 305, 356, 540, 552
MspR9I CCNGG 6 cut(s) 64, 306, 424, 541, 552, 553
MunI CAATTG 1 cut(s) 213
MvaI CCWGG 2 cut(s) 64, 424
MvnI CGCG 2 cut(s) 233, 268
MwoI GCNNNNNNNGC 3 cut(s) 545, 604, 607
NciI CCSGG 4 cut(s) 306, 541, 552, 553
NcoI CCATGG 1 cut(s) 486
NdeII GATC 3 cut(s) 316, 364, 575
NlaIII CATG 3 cut(s) 241, 333, 490
NlaIV GGNNCC 4 cut(s) 151, 186, 483, 624
NmuCI GTSAC 1 cut(s) 655
NspI RCATGY 1 cut(s) 241
PasI CCCWGGG 1 cut(s) 423
PfeI GAWTC 1 cut(s) 301
PfoI TCCNGGA 1 cut(s) 62
PkrI GCNGC 6 cut(s) 118, 243, 246, 466, 600, 609
PleI GAGTC 2 cut(s) 257, 477
PpsI GAGTC 2 cut(s) 257, 477
Ppu21I YACGTR 1 cut(s) 660
PpuMI RGGWCCY 1 cut(s) 184
Psp5II RGGWCCY 1 cut(s) 184
Psp6I CCWGG 2 cut(s) 62, 422
PspGI CCWGG 2 cut(s) 62, 422
PspN4I GGNNCC 4 cut(s) 151, 186, 483, 624
PspPI GGNCC 1 cut(s) 184
PspPPI RGGWCCY 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 158
SaqAI TTAA 1 cut(s) 311
SatI GCNGC 6 cut(s) 117, 242, 245, 465, 599, 608
Sau3AI GATC 3 cut(s) 316, 364, 575
Sau96I GGNCC 1 cut(s) 184
SchI GAGTC 2 cut(s) 257, 478
ScrFI CCNGG 6 cut(s) 64, 306, 424, 541, 552, 553
SduI GDGCHC 2 cut(s) 222, 486
SetI ASST 8 cut(s) 18, 126, 202, 496, 550, 612, 633, 662
SfaNI GCATC 4 cut(s) 64, 150, 440, 458
SinI GGWCC 1 cut(s) 184
SmaI CCCGGG 1 cut(s) 553
SmiMI CAYNNNNRTG 1 cut(s) 158
Sse9I AATT 4 cut(s) 213, 289, 337, 643
SsiI CCGC 5 cut(s) 117, 231, 242, 245, 268
SspMI CTAG 1 cut(s) 446
StyD4I CCNGG 6 cut(s) 62, 304, 422, 539, 550, 551
StyI CCWWGG 1 cut(s) 486
TaaI ACNGT 2 cut(s) 94, 530
TaiI ACGT 1 cut(s) 662
TasI AATT 4 cut(s) 213, 289, 337, 643
TauI GCSGC 3 cut(s) 119, 244, 247
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 1 cut(s) 311
Tru9I TTAA 1 cut(s) 311
TscAI CASTG 1 cut(s) 599
TseFI GTSAC 1 cut(s) 655
TseI GCWGC 3 cut(s) 464, 598, 607
Tsp45I GTSAC 1 cut(s) 655
TspDTI ATGAA 3 cut(s) 17, 114, 318
TspMI CCCGGG 1 cut(s) 551
TspRI CASTG 1 cut(s) 599
VpaK11BI GGWCC 1 cut(s) 184
XapI RAATTY 2 cut(s) 289, 337
XceI RCATGY 1 cut(s) 241
XmaI CCCGGG 1 cut(s) 551
XspI CTAG 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.