pycom15g09390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015560
Physical Location & Seq
Forward (+)
6134203 .. 6135454
1252 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g09390.1

Sequence Viewer

Length: 498 bp
ATGCAAACAGATGATTTGCCAACGGACCCTTTGCCTGCAGGGGATGAGAAGGCTCTTGTGCTCTATAACCCCACGAATACGCGGATTTTCAAAGCACCCGATTCGCAGGATTTCTCTGTCATTGTGAATTCGGACTTGATTCCGGGTTTAAGGGATCATATTTATTCATGGGGATATTCAAAATTGCTAAAACCAGTAGAGGATCCTGGATCCAATGAGGAAAACAAAGAAGTTTCAAATGGGTGTATGGCTGTTGTTCGCTGGGTTGCACCTAACTTCCCACCAGCATCAAGAGATGAGACACAGGCTGCAAGCCAGTCGGAACCCATGGAAGTTGAAATGATGGACACCGATGCTAATGGTTACAATGGGGCGGAAGCATCGGGGTTTGGTGGAACGATGATGGAAGGACCCGTTGGGATACAACACTGGCAGGAACAGCAGCTACATTGGATGGAGCCACAGCTCATCCAGAACAATTATACTCCGGTCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.29

Weight (kDa)

4.23

Isoelectric Point (pI)

38.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36450
malus_domestica MD08G1124200.v1.1 MD15G1102900.v1.1
prunus_persica Prupe.1G455900_v2.0.a1
pyrus_communis pycom08g10300 pycom15g09390
rosa_chinensis RchiOBHm_Chr6g0305451
rosa_laevigata RLG00000010891
rosa_multiflora Rmu_sc0007817.1_g000006
rosa_roxburghii Rroxscaffold_7G00162810
rosa_rugosa Rorug06G0340300
rosa_samantha Rh6AG452400 Rh6BG449400 Rh6CG466100 Rh6DG452800
rosa_wichuraiana Rw6G039410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 82
AciI CCGC 2 cut(s) 82, 374
AclWI GGATC 5 cut(s) 162, 197, 204, 210, 217
AcsI RAATTY 1 cut(s) 127
AgsI TTSAA 4 cut(s) 91, 180, 237, 338
AjnI CCWGG 1 cut(s) 205
AjuI GAANNNNNNNTTGG 2 cut(s) 399, 431
AluBI AGCT 2 cut(s) 445, 466
AluI AGCT 2 cut(s) 445, 466
Alw21I GWGCWC 1 cut(s) 63
Alw26I GTCTC 1 cut(s) 293
AlwI GGATC 5 cut(s) 162, 197, 204, 210, 217
ApeKI GCWGC 2 cut(s) 308, 442
ApoI RAATTY 1 cut(s) 127
AspS9I GGNCC 2 cut(s) 25, 410
AsuC2I CCSGG 1 cut(s) 144
AvaII GGWCC 2 cut(s) 25, 410
BamHI GGATCC 2 cut(s) 202, 209
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 2 cut(s) 295, 454
BccI CCATC 3 cut(s) 337, 397, 448
BcgI CGANNNNNNTGC 4 cut(s) 84, 118, 300, 334
BciT130I CCWGG 1 cut(s) 207
BciVI GTATCC 1 cut(s) 414
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 36
BfuI GTATCC 1 cut(s) 414
BisI GCNGC 2 cut(s) 309, 443
BlsI GCNGC 2 cut(s) 310, 444
Bme1390I CCNGG 2 cut(s) 144, 207
Bme18I GGWCC 2 cut(s) 25, 410
BmgT120I GGNCC 2 cut(s) 25, 410
BmiI GGNNCC 6 cut(s) 27, 204, 211, 324, 412, 459
BmrFI CCNGG 2 cut(s) 144, 207
BmsI GCATC 3 cut(s) 296, 343, 389
BpuMI CCSGG 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 327
BsaWI WCCGGW 1 cut(s) 487
Bse1I ACTGG 3 cut(s) 194, 316, 434
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 3 cut(s) 49, 459, 468
BseNI ACTGG 3 cut(s) 194, 316, 434
BseXI GCAGC 2 cut(s) 295, 454
BseYI CCCAGC 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 63
BsiSI CCGG 2 cut(s) 143, 488
BsmAI GTCTC 1 cut(s) 293
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 3 cut(s) 154, 202, 209
Bsp19I CCATGG 1 cut(s) 327
BspACI CCGC 2 cut(s) 82, 374
BspFNI CGCG 1 cut(s) 82
BspLI GGNNCC 6 cut(s) 27, 204, 211, 324, 412, 459
BspMAI CTGCAG 1 cut(s) 40
BspPI GGATC 5 cut(s) 162, 197, 204, 210, 217
BsrI ACTGG 3 cut(s) 194, 316, 434
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 3 cut(s) 154, 202, 209
BssT1I CCWWGG 1 cut(s) 327
Bst2UI CCWGG 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 36, 313
BstDSI CCRYGG 1 cut(s) 327
BstF5I GGATG 3 cut(s) 49, 459, 468
BstFNI CGCG 1 cut(s) 82
BstKTI GATC 3 cut(s) 157, 205, 212
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 3 cut(s) 154, 202, 209
BstMWI GCNNNNNNNGC 1 cut(s) 439
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 2 cut(s) 142, 205
BstSFI CTRYAG 1 cut(s) 36
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 2 cut(s) 295, 454
BstX2I RGATCY 2 cut(s) 202, 209
BstYI RGATCY 2 cut(s) 202, 209
BsuI GTATCC 1 cut(s) 414
BtgI CCRYGG 1 cut(s) 327
BtsCI GGATG 3 cut(s) 49, 459, 468
BtsIMutI CAGTG 1 cut(s) 427
Cac8I GCNNGC 2 cut(s) 36, 313
Cfr13I GGNCC 2 cut(s) 25, 410
CviAII CATG 2 cut(s) 168, 328
CviJI RGCY 7 cut(s) 53, 251, 308, 315, 445, 460, 466
CviKI_1 RGCY 7 cut(s) 53, 251, 308, 315, 445, 460, 466
DpnI GATC 3 cut(s) 156, 204, 211
DpnII GATC 3 cut(s) 154, 202, 209
EciI GGCGGA 1 cut(s) 389
Eco130I CCWWGG 1 cut(s) 327
Eco47I GGWCC 2 cut(s) 25, 410
EcoO109I RGGNCCY 1 cut(s) 410
EcoRI GAATTC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 327
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 2 cut(s) 171, 331
FaiI YATR 6 cut(s) 66, 159, 169, 248, 329, 483
FatI CATG 2 cut(s) 167, 327
Fnu4HI GCNGC 2 cut(s) 309, 443
FokI GGATG 3 cut(s) 56, 455, 466
Fsp4HI GCNGC 2 cut(s) 309, 443
GluI GCNGC 2 cut(s) 309, 443
GsaI CCCAGC 1 cut(s) 265
HapII CCGG 2 cut(s) 143, 488
Hin1II CATG 2 cut(s) 171, 331
HinfI GANTC 2 cut(s) 101, 139
HpaII CCGG 2 cut(s) 143, 488
Hpy188I TCNGA 2 cut(s) 133, 322
Hpy188III TCNNGA 2 cut(s) 291, 472
HpyAV CCTTC 2 cut(s) 43, 401
HpyCH4V TGCA 4 cut(s) 4, 38, 269, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 439
Hsp92II CATG 2 cut(s) 171, 331
Kzo9I GATC 3 cut(s) 154, 202, 209
LmnI GCTCC 1 cut(s) 457
Lsp1109I GCAGC 2 cut(s) 295, 454
LweI GCATC 3 cut(s) 296, 343, 389
MaeIII GTNAC 2 cut(s) 362, 490
MalI GATC 3 cut(s) 156, 204, 211
MboI GATC 3 cut(s) 154, 202, 209
MflI RGATCY 2 cut(s) 202, 209
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 3 cut(s) 127, 182, 478
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 2 cut(s) 193, 211
MseI TTAA 2 cut(s) 149, 496
MspI CCGG 2 cut(s) 143, 488
MspR9I CCNGG 2 cut(s) 144, 207
MvaI CCWGG 1 cut(s) 207
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 1 cut(s) 439
NciI CCSGG 1 cut(s) 144
NcoI CCATGG 1 cut(s) 327
NdeII GATC 3 cut(s) 154, 202, 209
NlaIII CATG 2 cut(s) 171, 331
NlaIV GGNNCC 6 cut(s) 27, 204, 211, 324, 412, 459
NmuCI GTSAC 1 cut(s) 490
PfeI GAWTC 2 cut(s) 101, 139
PfoI TCCNGGA 1 cut(s) 205
PkrI GCNGC 2 cut(s) 310, 444
PpuMI RGGWCCY 1 cut(s) 410
Psp5II RGGWCCY 1 cut(s) 410
Psp6I CCWGG 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 261
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 6 cut(s) 27, 204, 211, 324, 412, 459
PspPI GGNCC 2 cut(s) 25, 410
PspPPI RGGWCCY 1 cut(s) 410
PsrI GAACNNNNNNTAC 2 cut(s) 429, 461
PstI CTGCAG 1 cut(s) 40
PsuI RGATCY 2 cut(s) 202, 209
SaqAI TTAA 2 cut(s) 149, 496
SatI GCNGC 2 cut(s) 309, 443
Sau3AI GATC 3 cut(s) 154, 202, 209
Sau96I GGNCC 2 cut(s) 25, 410
SbfI CCTGCAGG 1 cut(s) 40
ScrFI CCNGG 2 cut(s) 144, 207
SdaI CCTGCAGG 1 cut(s) 40
SduI GDGCHC 1 cut(s) 63
SetI ASST 3 cut(s) 274, 447, 468
SfaNI GCATC 3 cut(s) 296, 343, 389
SfcI CTRYAG 1 cut(s) 36
SinI GGWCC 2 cut(s) 25, 410
Sse8387I CCTGCAGG 1 cut(s) 40
Sse9I AATT 3 cut(s) 127, 182, 478
SsiI CCGC 2 cut(s) 82, 374
StyD4I CCNGG 2 cut(s) 142, 205
StyI CCWWGG 1 cut(s) 327
TasI AATT 3 cut(s) 127, 182, 478
TfiI GAWTC 2 cut(s) 101, 139
Tru1I TTAA 2 cut(s) 149, 496
Tru9I TTAA 2 cut(s) 149, 496
TscAI CASTG 1 cut(s) 434
TseFI GTSAC 1 cut(s) 490
TseI GCWGC 2 cut(s) 308, 442
Tsp45I GTSAC 1 cut(s) 490
TspDTI ATGAA 1 cut(s) 156
TspGWI ACGGA 1 cut(s) 38
TspRI CASTG 1 cut(s) 434
VpaK11BI GGWCC 2 cut(s) 25, 410
XapI RAATTY 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.