FvH4_2g36760

Ring finger domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
26862329 .. 26866852
4524 bp
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UTR
Exon/CDS
Intron
FvH4_2g36760.t5

Sequence Viewer

Length: 1350 bp
ATGGATGATTATTCTGGTAAAAGAGCTAGTGATGGACTTGTCTCTAGAAAGGGGACTGGCCTTGTTTTGAGGGAAGCCCCAAACAGAGATCGTAATGCTCAGGTCTGCAGCCGGCTGGGATGCAGTGGAAGACTGAATTCTGTGAAAGGTGCTCAAATTGAAAAACCCAAATCTTCAAGGCCTGCGTTCCTCTCTTCTACAAGTGGAAAAGAGATAGTTGGCAGTTCCTCTAGGTCTTGCATTTCTGTTAACAACTCAAGAAAATCCATTAGAGAACCTTGCAAAAAGCTAACTTCTAATTTGGAAACAGATTCATCTGAAACCAGCAGTATTCAGGATGATCCAGAAGTTTCAGAAGTTACTCCCCCACCTGGAAAGATTAAGAGAGGGCTTCACCCTGAATCTAAAAATGGGGAATCTAGCGAGGCCTCCTTGATGGAAGTTGGAAGCTCCGATGTATCATCAAATACAAGATCCCGAAGGAACTTCAATCAGAGATATGGATTGCGCAACCAAGAAACATTATTGGGTTCTTCTGTTCCTTTTGGATCTAAGAACAACAACCAGACAGCACGACCTAGCACAACCAGGAATGGCTTAAGAAATCTAAAGTGCAATTCGGTGTCTGATGCTGTTCCGTCCAGTTGTTCATCATCAGACTCAAGCGTGAACAGGAGGGAGACTGTAAAGAAAAGAATTTCTGAAGGAGAAAGTAGCTCAACTGCTAAGGGGAAGAAGATGAATGGGTCATCTTCAGGGCAAAATTCCACTACGAGCCATGGAATAACCATTGCTGATTCAAGAAGAGGTAGAAATACACCTCCTAACAGGGATAATGGTGTTGCATCAGTTAGGACTCGGAGAACTGTCACTGGTCACACACGGGCTAGGATTTCTAATCAAGGAAGCGGAAACAATTTGTCAACCAACGGATCCTCTTCAGTTGGCCCTCATATGTCTCAACCTGATATGTCTGTCGACTTGAGTGGTGCTAGTTCATCACAACATTTATCTTCAGAAACTCCTTCAAATCGGGCGAATTCTTATAGTAGATCAGGTAGTAGCAGTAGACCAAGTAGTGGTGGTGGGAGTTTACATGGCATGATGCGATCTGGTACTGCAGATATTGGGTTTTCCCGGTCTCTAATGAATCAGGATGGTCAGCGACGCTACAACATGGATGGGATTGCAGAGGTATTGCTAGCACTCGAGAGGATTGAACAAGATGAAGAGCTATCATTTGAGCAAATACTTGTTCTGGAGACCAATTTGTTCCTGAATGGCCTAAACTTCTATGATCAGCATAGAGACATGAGGCTGGATATTGATAACATGTCATATGAGCATTAG

Protein Analysis

450

Amino Acids

48.38

Weight (kDa)

9.66

Isoelectric Point (pI)

54.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 434 - 485 9.8e-08 RING-H2 zinc finger domain
zf-RING_2 PF13639 443 - 485 5.7e-12 Ring finger domain
zf-C3HC4_2 PF13923 443 - 484 7.7e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 444 - 471 2.6e-06 RING-like zinc finger
zf-C3HC4 PF00097 444 - 484 9e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 509
AccB7I CCANNNNNTGG 1 cut(s) 1079
AccI GTMKAC 2 cut(s) 978, 1069
AciI CCGC 1 cut(s) 909
AclWI GGATC 5 cut(s) 335, 468, 556, 927, 940
AcsI RAATTY 4 cut(s) 136, 696, 763, 1039
AcuI CTGAAG 4 cut(s) 723, 738, 924, 999
AfaI GTAC 1 cut(s) 1117
AfiI CCNNNNNNNGG 2 cut(s) 371, 1079
AflII CTTAAG 1 cut(s) 598
AflIII ACRYGT 1 cut(s) 1332
AgsI TTSAA 6 cut(s) 161, 177, 490, 801, 1029, 1220
AjnI CCWGG 2 cut(s) 370, 587
AluBI AGCT 5 cut(s) 26, 289, 450, 717, 1234
AluI AGCT 5 cut(s) 26, 289, 450, 717, 1234
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 6 cut(s) 46, 674, 963, 1146, 1256, 1302
AlwI GGATC 5 cut(s) 335, 468, 556, 927, 940
Ama87I CYCGRG 1 cut(s) 1208
AoxI GGCC 5 cut(s) 58, 179, 426, 946, 1282
ApeKI GCWGC 1 cut(s) 108
ApoI RAATTY 4 cut(s) 136, 696, 763, 1039
AspLEI GCGC 1 cut(s) 510
AspS9I GGNCC 1 cut(s) 947
AsuC2I CCSGG 1 cut(s) 1138
AsuHPI GGTGA 1 cut(s) 386
AsuNHI GCTAGC 1 cut(s) 1201
AvaI CYCGRG 1 cut(s) 1208
BamHI GGATCC 1 cut(s) 932
BbsI GAAGAC 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 120
BccI CCATC 4 cut(s) 26, 430, 1151, 1175
BciT130I CCWGG 2 cut(s) 372, 589
BclI TGATCA 1 cut(s) 1297
BcnI CCSGG 1 cut(s) 1138
BcoDI GTCTC 6 cut(s) 46, 674, 963, 1146, 1256, 1302
BfaI CTAG 8 cut(s) 27, 45, 231, 420, 579, 888, 993, 1202
BfmI CTRYAG 2 cut(s) 106, 1119
BfrI CTTAAG 1 cut(s) 598
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
Bme1390I CCNGG 3 cut(s) 372, 589, 1138
BmeT110I CYCGRG 1 cut(s) 1208
BmgT120I GGNCC 1 cut(s) 947
BmiI GGNNCC 1 cut(s) 934
BmrFI CCNGG 3 cut(s) 372, 589, 1138
BmsI GCATC 4 cut(s) 110, 619, 854, 1095
BmtI GCTAGC 1 cut(s) 1205
BpiI GAAGAC 1 cut(s) 136
BpmI CTGGAG 1 cut(s) 1280
Bpu10I CCTNAGC 2 cut(s) 99, 726
BpuEI CTTGAG 3 cut(s) 241, 646, 1003
BpuMI CCSGG 1 cut(s) 1138
BsaI GGTCTC 2 cut(s) 1146, 1256
BsaJI CCNNGG 1 cut(s) 778
Bsc4I CCNNNNNNNGG 2 cut(s) 371, 1079
Bse118I RCCGGY 1 cut(s) 111
Bse1I ACTGG 3 cut(s) 61, 642, 877
Bse3DI GCAATG 1 cut(s) 789
BseBI CCWGG 2 cut(s) 372, 589
BseDI CCNNGG 1 cut(s) 778
BseGI GGATG 5 cut(s) 10, 125, 343, 1162, 1186
BseLI CCNNNNNNNGG 2 cut(s) 371, 1079
BseMI GCAATG 1 cut(s) 789
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 3 cut(s) 61, 642, 877
BseXI GCAGC 1 cut(s) 120
BseYI CCCAGC 1 cut(s) 115
BshFI GGCC 5 cut(s) 60, 181, 428, 948, 1284
BsiHKAI GWGCWC 1 cut(s) 154
BsiHKCI CYCGRG 1 cut(s) 1208
BsiSI CCGG 2 cut(s) 112, 1138
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 371, 1079
BsmAI GTCTC 6 cut(s) 46, 674, 963, 1146, 1256, 1302
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 5 cut(s) 60, 181, 428, 948, 1284
Bso31I GGTCTC 2 cut(s) 1146, 1256
BsoBI CYCGRG 1 cut(s) 1208
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 8 cut(s) 88, 340, 473, 548, 932, 1052, 1109, 1297
Bsp19I CCATGG 1 cut(s) 778
BspACI CCGC 1 cut(s) 909
BspANI GGCC 5 cut(s) 60, 181, 428, 948, 1284
BspCNI CTCAG 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 934
BspMAI CTGCAG 2 cut(s) 110, 1123
BspOI GCTAGC 1 cut(s) 1205
BspPI GGATC 5 cut(s) 335, 468, 556, 927, 940
BspQI GCTCTTC 1 cut(s) 1224
BspTI CTTAAG 1 cut(s) 598
BspTNI GGTCTC 2 cut(s) 1146, 1256
BsrDI GCAATG 1 cut(s) 789
BsrFI RCCGGY 1 cut(s) 111
BsrI ACTGG 3 cut(s) 61, 642, 877
BssAI RCCGGY 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 778
BssMI GATC 8 cut(s) 88, 340, 473, 548, 932, 1052, 1109, 1297
BssT1I CCWWGG 1 cut(s) 778
Bst2UI CCWGG 2 cut(s) 372, 589
Bst4CI ACNGT 2 cut(s) 685, 868
Bst6I CTCTTC 4 cut(s) 199, 799, 943, 1224
BstAFI CTTAAG 1 cut(s) 598
BstC8I GCNNGC 3 cut(s) 113, 183, 1203
BstDEI CTNAG 3 cut(s) 99, 552, 726
BstDSI CCRYGG 1 cut(s) 778
BstF5I GGATG 5 cut(s) 10, 125, 343, 1162, 1186
BstHHI GCGC 1 cut(s) 510
BstKTI GATC 8 cut(s) 91, 343, 476, 551, 935, 1055, 1112, 1300
BstMAI GTCTC 6 cut(s) 46, 674, 963, 1146, 1256, 1302
BstMBI GATC 8 cut(s) 88, 340, 473, 548, 932, 1052, 1109, 1297
BstNI CCWGG 2 cut(s) 372, 589
BstNSI RCATGY 1 cut(s) 1336
BstSCI CCNGG 3 cut(s) 370, 587, 1136
BstSFI CTRYAG 2 cut(s) 106, 1119
BstV1I GCAGC 1 cut(s) 120
BstV2I GAAGAC 1 cut(s) 136
BstX2I RGATCY 3 cut(s) 473, 548, 932
BstYI RGATCY 3 cut(s) 473, 548, 932
BsuRI GGCC 5 cut(s) 60, 181, 428, 948, 1284
BtgI CCRYGG 1 cut(s) 778
BtsCI GGATG 5 cut(s) 10, 125, 343, 1162, 1186
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 2 cut(s) 130, 870
Cac8I GCNNGC 3 cut(s) 113, 183, 1203
CfoI GCGC 1 cut(s) 510
Cfr10I RCCGGY 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 947
CseI GACGC 1 cut(s) 1176
Csp6I GTAC 1 cut(s) 1116
CviAII CATG 6 cut(s) 779, 1097, 1102, 1177, 1312, 1333
CviQI GTAC 1 cut(s) 1116
DdeI CTNAG 3 cut(s) 99, 552, 726
DpnI GATC 8 cut(s) 90, 342, 475, 550, 934, 1054, 1111, 1299
DpnII GATC 8 cut(s) 88, 340, 473, 548, 932, 1052, 1109, 1297
Eam1104I CTCTTC 4 cut(s) 199, 799, 943, 1224
EarI CTCTTC 4 cut(s) 199, 799, 943, 1224
Eco130I CCWWGG 1 cut(s) 778
Eco147I AGGCCT 2 cut(s) 181, 428
Eco31I GGTCTC 2 cut(s) 1146, 1256
Eco57I CTGAAG 4 cut(s) 723, 738, 924, 999
Eco88I CYCGRG 1 cut(s) 1208
EcoRI GAATTC 2 cut(s) 136, 1039
EcoRII CCWGG 2 cut(s) 370, 587
EcoT14I CCWWGG 1 cut(s) 778
ErhI CCWWGG 1 cut(s) 778
FaeI CATG 6 cut(s) 782, 1100, 1105, 1180, 1315, 1336
FaqI GGGAC 1 cut(s) 67
FatI CATG 6 cut(s) 778, 1096, 1101, 1176, 1311, 1332
FauNDI CATATG 2 cut(s) 954, 1339
FbaI TGATCA 1 cut(s) 1297
FblI GTMKAC 2 cut(s) 978, 1069
Fnu4HI GCNGC 1 cut(s) 109
FokI GGATG 5 cut(s) 17, 132, 350, 1169, 1193
Fsp4HI GCNGC 1 cut(s) 109
FspBI CTAG 8 cut(s) 27, 45, 231, 420, 579, 888, 993, 1202
FspI TGCGCA 1 cut(s) 509
GlaI GCGC 1 cut(s) 509
GluI GCNGC 1 cut(s) 109
GsaI CCCAGC 1 cut(s) 119
GsuI CTGGAG 1 cut(s) 1280
HaeIII GGCC 5 cut(s) 60, 181, 428, 948, 1284
HapII CCGG 2 cut(s) 112, 1138
HgaI GACGC 1 cut(s) 1176
HhaI GCGC 1 cut(s) 510
Hin1II CATG 6 cut(s) 782, 1100, 1105, 1180, 1315, 1336
Hin6I GCGC 1 cut(s) 508
HinP1I GCGC 1 cut(s) 508
HincII GTYRAC 3 cut(s) 250, 924, 979
HindII GTYRAC 3 cut(s) 250, 924, 979
HinfI GANTC 7 cut(s) 311, 401, 416, 659, 797, 856, 1150
HpaI GTTAAC 1 cut(s) 250
HpaII CCGG 2 cut(s) 112, 1138
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 6 cut(s) 250, 670, 924, 979, 1070, 1094
Hpy188I TCNGA 9 cut(s) 319, 355, 454, 495, 628, 658, 703, 861, 1018
Hpy8I GTNNAC 6 cut(s) 250, 670, 924, 979, 1070, 1094
Hpy99I CGWCG 1 cut(s) 1170
HpyAV CCTTC 3 cut(s) 474, 698, 1035
HpyCH4III ACNGT 2 cut(s) 685, 868
HpyCH4V TGCA 8 cut(s) 108, 123, 240, 282, 615, 845, 1121, 1190
HpyF3I CTNAG 3 cut(s) 99, 552, 726
Hsp92II CATG 6 cut(s) 782, 1100, 1105, 1180, 1315, 1336
HspAI GCGC 1 cut(s) 508
KroI GCCGGC 1 cut(s) 111
KroNI GCCGGC 1 cut(s) 113
Ksp22I TGATCA 1 cut(s) 1297
KspAI GTTAAC 1 cut(s) 250
Kzo9I GATC 8 cut(s) 88, 340, 473, 548, 932, 1052, 1109, 1297
LguI GCTCTTC 1 cut(s) 1224
LmnI GCTCC 1 cut(s) 455
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 4 cut(s) 110, 619, 854, 1095
MaeI CTAG 8 cut(s) 27, 45, 231, 420, 579, 888, 993, 1202
MaeIII GTNAC 3 cut(s) 358, 868, 875
MalI GATC 8 cut(s) 90, 342, 475, 550, 934, 1054, 1111, 1299
MboI GATC 8 cut(s) 88, 340, 473, 548, 932, 1052, 1109, 1297
MflI RGATCY 3 cut(s) 473, 548, 932
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 9 cut(s) 136, 156, 298, 616, 696, 763, 916, 1039, 1267
MlyI GAGTC 2 cut(s) 653, 850
MmeI TCCRAC 1 cut(s) 424
MroNI GCCGGC 1 cut(s) 111
MseI TTAA 3 cut(s) 249, 381, 599
MspCI CTTAAG 1 cut(s) 598
MspI CCGG 2 cut(s) 112, 1138
MspR9I CCNGG 3 cut(s) 372, 589, 1138
MvaI CCWGG 2 cut(s) 372, 589
NaeI GCCGGC 1 cut(s) 113
NciI CCSGG 1 cut(s) 1138
NcoI CCATGG 1 cut(s) 778
NdeI CATATG 2 cut(s) 954, 1339
NdeII GATC 8 cut(s) 88, 340, 473, 548, 932, 1052, 1109, 1297
NgoMIV GCCGGC 1 cut(s) 111
NheI GCTAGC 1 cut(s) 1201
NlaIII CATG 6 cut(s) 782, 1100, 1105, 1180, 1315, 1336
NlaIV GGNNCC 1 cut(s) 934
NmuCI GTSAC 2 cut(s) 868, 875
NsbI TGCGCA 1 cut(s) 509
NspI RCATGY 1 cut(s) 1336
PaeR7I CTCGAG 1 cut(s) 1208
PceI AGGCCT 2 cut(s) 181, 428
PciI ACATGT 1 cut(s) 1332
PciSI GCTCTTC 1 cut(s) 1224
PdiI GCCGGC 1 cut(s) 113
PfeI GAWTC 5 cut(s) 311, 401, 416, 797, 1150
PflMI CCANNNNNTGG 1 cut(s) 1079
PkrI GCNGC 1 cut(s) 110
PleI GAGTC 2 cut(s) 653, 850
PpsI GAGTC 2 cut(s) 653, 850
PscI ACATGT 1 cut(s) 1332
Psp6I CCWGG 2 cut(s) 370, 587
PspFI CCCAGC 1 cut(s) 115
PspGI CCWGG 2 cut(s) 370, 587
PspN4I GGNNCC 1 cut(s) 934
PspPI GGNCC 1 cut(s) 947
PstI CTGCAG 2 cut(s) 110, 1123
PsuI RGATCY 3 cut(s) 473, 548, 932
RsaI GTAC 1 cut(s) 1117
RsaNI GTAC 1 cut(s) 1116
SalI GTCGAC 1 cut(s) 977
SapI GCTCTTC 1 cut(s) 1224
SaqAI TTAA 3 cut(s) 249, 381, 599
SatI GCNGC 1 cut(s) 109
Sau3AI GATC 8 cut(s) 88, 340, 473, 548, 932, 1052, 1109, 1297
Sau96I GGNCC 1 cut(s) 947
SchI GAGTC 2 cut(s) 653, 850
ScrFI CCNGG 3 cut(s) 372, 589, 1138
SduI GDGCHC 1 cut(s) 154
SfaNI GCATC 4 cut(s) 110, 619, 854, 1095
SfcI CTRYAG 2 cut(s) 106, 1119
Sfr274I CTCGAG 1 cut(s) 1208
SlaI CTCGAG 1 cut(s) 1208
SmlI CTYRAG 5 cut(s) 256, 598, 661, 982, 1208
SmoI CTYRAG 5 cut(s) 256, 598, 661, 982, 1208
Sse9I AATT 9 cut(s) 136, 156, 298, 616, 696, 763, 916, 1039, 1267
SseBI AGGCCT 2 cut(s) 181, 428
SsiI CCGC 1 cut(s) 909
SspMI CTAG 8 cut(s) 27, 45, 231, 420, 579, 888, 993, 1202
StuI AGGCCT 2 cut(s) 181, 428
StyD4I CCNGG 3 cut(s) 370, 587, 1136
StyI CCWWGG 1 cut(s) 778
TaaI ACNGT 2 cut(s) 685, 868
TaqI TCGA 2 cut(s) 978, 1209
TasI AATT 9 cut(s) 136, 156, 298, 616, 696, 763, 916, 1039, 1267
TfiI GAWTC 5 cut(s) 311, 401, 416, 797, 1150
Tru1I TTAA 3 cut(s) 249, 381, 599
Tru9I TTAA 3 cut(s) 249, 381, 599
TscAI CASTG 2 cut(s) 130, 877
TseFI GTSAC 2 cut(s) 868, 875
TseI GCWGC 1 cut(s) 108
Tsp45I GTSAC 2 cut(s) 868, 875
TspDTI ATGAA 6 cut(s) 303, 639, 755, 987, 1163, 1242
TspGWI ACGGA 2 cut(s) 627, 945
TspRI CASTG 2 cut(s) 130, 877
Van91I CCANNNNNTGG 1 cut(s) 1079
Vha464I CTTAAG 1 cut(s) 598
XapI RAATTY 4 cut(s) 136, 696, 763, 1039
XbaI TCTAGA 1 cut(s) 44
XceI RCATGY 1 cut(s) 1336
XhoI CTCGAG 1 cut(s) 1208
XmiI GTMKAC 2 cut(s) 978, 1069
XspI CTAG 8 cut(s) 27, 45, 231, 420, 579, 888, 993, 1202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.