Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8384967.1

Orthogroup ID

OG0002390

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1100

Gene Structure 1099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8384967.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1099 bp

atggatgagtattccggtaaaagagctagtgatggacttgtctctagaaaggggcctagtcttgttttgagggaaactccaaacagagatcgtaatgctcaggtctgcagccgactgggatgcagtggaagactgaattctgtgaaaggtgctcaaattgaaaaggccaaatcttcaaagcctgcattccgctcttcttcaaatgggaaagagatagtaggaagttcctctaggtcttgtatttctgttggcaactcaagaaaatccggtagagaaccttgcaaaaagctatcttctaatttggaaacagattcatctgaaaccagcagtgttcaggatgatccagaagtgtcagaagtcactcctccacctggaaagattcagagagggcttcaccctgaatctaaaaatggggagtctagtgaagtctccttgatggaaactggaagctccgatgtatcatcaaataccagatcccggaggaatttcaatcagagaactggattgcgcaaccaagaaacgttattgggttcttctgttcctttcggatctaaaaacaacaaccagacaacacgagctagcacaaccaggaatggcttaagaaatctaaggtgcaattcagtatctgatgttgttccgtccagttgttcatcatcagattctagcgtcaacaggagggagaccctaaagaaaagaatttctgaaggagaaagtagctcagctgctaaggggaagaagatgaatgggtcatcttctgggcaaaactccaattcgagccatggaatctcaattgctgattcaagaagaggtagaaatatacctcctaacagggataatggtgttgcgtcggttaggactcggagaactgttactggtcacacaagggctaggatttctaatcaaggaagtggaaacaatatgtcaagcaatggatcttctgcagttggccctcatatgtctcaacctgagatgtctatcgatatgaatggtgctagttcatcacaacacttatcttctgaagctcctttaaatcggccaaattcttatagtagaccaggtagtagcagtagaccaggtagtggcagtgggagtttacatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

366

Amino Acids

38.7

Weight (kDa)

10.49

Isoelectric Point (pI)

58.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31450 AT4G31450 AT5G10650 AT5G10650 AT5G10650 AT5G24870 AT5G24870 AT5G24870
fragaria_vesca	FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760
malus_domestica	MD08G1128400.v1.1 MD15G1107900.v1.1
prunus_persica	Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1
pyrus_communis	pycom08g10730 pycom15g09860
rosa_chinensis	RchiOBHm_Chr6g0304981
rosa_laevigata	RLG00000010931
rosa_multiflora	Rmu_co8384967.1_g000001 Rmu_sc0026376.1_g000001 Rmu_sc0028342.1_g000002
rosa_roxburghii	Rroxscaffold_7G00163300
rosa_rugosa	Rorug06G0336500 Rorug06G0336600 Rorug06G0336600
rosa_samantha	Rh6AG447900 Rh6BG453000 Rh6CG461600 Rh6DG448600
rosa_wichuraiana	Rw6G039010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	509
AccB7I	CCANNNNNTGG	1 cut(s)	1079
AccBSI	CCGCTC	1 cut(s)	192
AccI	GTMKAC	2 cut(s)	1051, 1069
AciI	CCGC	1 cut(s)	190
AclI	AACGTT	1 cut(s)	521
AclWI	GGATC	4 cut(s)	335, 468, 556, 940
AcoI	YGGCCR	1 cut(s)	1034
AcsI	RAATTY	4 cut(s)	136, 484, 696, 1039
AcuI	CTGAAG	2 cut(s)	723, 1038
AfiI	CCNNNNNNNGG	3 cut(s)	371, 477, 1079
AflII	CTTAAG	1 cut(s)	598
AgsI	TTSAA	5 cut(s)	161, 177, 201, 490, 801
AjnI	CCWGG	4 cut(s)	370, 587, 1054, 1072
AluBI	AGCT	7 cut(s)	26, 289, 450, 578, 717, 722, 1022
AluI	AGCT	7 cut(s)	26, 289, 450, 578, 717, 722, 1022
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	4 cut(s)	46, 433, 674, 963
AlwI	GGATC	4 cut(s)	335, 468, 556, 940
AlwNI	CAGNNNCTG	1 cut(s)	626
AoxI	GGCC	4 cut(s)	53, 165, 946, 1034
ApeKI	GCWGC	2 cut(s)	108, 722
ApoI	RAATTY	4 cut(s)	136, 484, 696, 1039
AspLEI	GCGC	1 cut(s)	510
AspS9I	GGNCC	2 cut(s)	53, 947
AsuC2I	CCSGG	1 cut(s)	478
AsuHPI	GGTGA	1 cut(s)	386
AsuNHI	GCTAGC	1 cut(s)	578
BauI	CACGAG	1 cut(s)	573
BbsI	GAAGAC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	2 cut(s)	120, 709
BccI	CCATC	2 cut(s)	26, 430
BcgI	CGANNNNNNTGC	2 cut(s)	102, 136
BciT130I	CCWGG	4 cut(s)	372, 589, 1056, 1074
BcnI	CCSGG	1 cut(s)	478
BcoDI	GTCTC	4 cut(s)	46, 433, 674, 963
BfaI	CTAG	9 cut(s)	27, 45, 57, 231, 420, 579, 663, 888, 993
BfmI	CTRYAG	2 cut(s)	106, 939
BfrI	CTTAAG	1 cut(s)	598
BisI	GCNGC	2 cut(s)	109, 723
BlpI	GCTNAGC	1 cut(s)	718
BlsI	GCNGC	2 cut(s)	110, 724
Bme1390I	CCNGG	5 cut(s)	372, 478, 589, 1056, 1074
BmgT120I	GGNCC	2 cut(s)	53, 947
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	5 cut(s)	372, 478, 589, 1056, 1074
BmrI	ACTGGG	1 cut(s)	125
BmsI	GCATC	1 cut(s)	110
BmtI	GCTAGC	1 cut(s)	582
BmuI	ACTGGG	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	136
BplI	GAGNNNNNCTC	2 cut(s)	61, 93
Bpu10I	CCTNAGC	2 cut(s)	99, 726
Bpu1102I	GCTNAGC	1 cut(s)	718
BpuEI	CTTGAG	1 cut(s)	241
BpuMI	CCSGG	1 cut(s)	478
Bsa29I	ATCGAT	1 cut(s)	978
BsaBI	GATNNNNATC	1 cut(s)	974
BsaI	GGTCTC	1 cut(s)	674
BsaJI	CCNNGG	1 cut(s)	778
BsaWI	WCCGGW	2 cut(s)	14, 266
Bsc4I	CCNNNNNNNGG	3 cut(s)	371, 477, 1079
Bse1I	ACTGG	5 cut(s)	120, 448, 505, 642, 877
Bse3DI	GCAATG	1 cut(s)	934
Bse8I	GATNNNNATC	1 cut(s)	974
BseBI	CCWGG	4 cut(s)	372, 589, 1056, 1074
BseCI	ATCGAT	1 cut(s)	978
BseDI	CCNNGG	1 cut(s)	778
BseGI	GGATG	3 cut(s)	10, 125, 343
BseJI	GATNNNNATC	1 cut(s)	974
BseLI	CCNNNNNNNGG	3 cut(s)	371, 477, 1079
BseMI	GCAATG	1 cut(s)	934
BseMII	CTCAG	3 cut(s)	113, 732, 957
BseNI	ACTGG	5 cut(s)	120, 448, 505, 642, 877
BseRI	GAGGAG	1 cut(s)	354
BseXI	GCAGC	2 cut(s)	120, 709
BshFI	GGCC	4 cut(s)	55, 167, 948, 1036
BshVI	ATCGAT	1 cut(s)	978
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	3 cut(s)	15, 267, 478
BslI	CCNNNNNNNGG	3 cut(s)	371, 477, 1079
BsmAI	GTCTC	4 cut(s)	46, 433, 674, 963
BsmI	GAATGC	1 cut(s)	185
BsnI	GGCC	4 cut(s)	55, 167, 948, 1036
Bso31I	GGTCTC	1 cut(s)	674
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	5 cut(s)	88, 340, 473, 548, 932
Bsp1720I	GCTNAGC	1 cut(s)	718
Bsp19I	CCATGG	1 cut(s)	778
BspACI	CCGC	1 cut(s)	190
BspANI	GGCC	4 cut(s)	55, 167, 948, 1036
BspCNI	CTCAG	3 cut(s)	112, 731, 958
BspDI	ATCGAT	1 cut(s)	978
BspLI	GGNNCC	1 cut(s)	54
BspMAI	CTGCAG	2 cut(s)	110, 943
BspOI	GCTAGC	1 cut(s)	582
BspPI	GGATC	4 cut(s)	335, 468, 556, 940
BspQI	GCTCTTC	1 cut(s)	199
BspTI	CTTAAG	1 cut(s)	598
BspTNI	GGTCTC	1 cut(s)	674
BsrBI	CCGCTC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	934
BsrI	ACTGG	5 cut(s)	120, 448, 505, 642, 877
BssECI	CCNNGG	1 cut(s)	778
BssMI	GATC	5 cut(s)	88, 340, 473, 548, 932
BssSI	CACGAG	1 cut(s)	573
BssT1I	CCWWGG	1 cut(s)	778
Bst2BI	CACGAG	1 cut(s)	573
Bst2UI	CCWGG	4 cut(s)	372, 589, 1056, 1074
Bst4CI	ACNGT	1 cut(s)	868
Bst6I	CTCTTC	2 cut(s)	199, 799
BstAFI	CTTAAG	1 cut(s)	598
BstC8I	GCNNGC	2 cut(s)	183, 580
BstDEI	CTNAG	5 cut(s)	99, 608, 718, 726, 966
BstDSI	CCRYGG	1 cut(s)	778
BstF5I	GGATG	3 cut(s)	10, 125, 343
BstHHI	GCGC	1 cut(s)	510
BstKTI	GATC	5 cut(s)	91, 343, 476, 551, 935
BstMAI	GTCTC	4 cut(s)	46, 433, 674, 963
BstMBI	GATC	5 cut(s)	88, 340, 473, 548, 932
BstNI	CCWGG	4 cut(s)	372, 589, 1056, 1074
BstSCI	CCNGG	5 cut(s)	370, 476, 587, 1054, 1072
BstSFI	CTRYAG	2 cut(s)	106, 939
BstV1I	GCAGC	2 cut(s)	120, 709
BstV2I	GAAGAC	1 cut(s)	136
BstX2I	RGATCY	3 cut(s)	473, 548, 932
BstYI	RGATCY	3 cut(s)	473, 548, 932
Bsu15I	ATCGAT	1 cut(s)	978
BsuRI	GGCC	4 cut(s)	55, 167, 948, 1036
BsuTUI	ATCGAT	1 cut(s)	978
BtgI	CCRYGG	1 cut(s)	778
BtsCI	GGATG	3 cut(s)	10, 125, 343
BtsI	GCAGTG	3 cut(s)	130, 334, 1090
BtsIMutI	CAGTG	3 cut(s)	130, 334, 1090
Cac8I	GCNNGC	2 cut(s)	183, 580
CaiI	CAGNNNCTG	1 cut(s)	626
CfoI	GCGC	1 cut(s)	510
Cfr13I	GGNCC	2 cut(s)	53, 947
ClaI	ATCGAT	1 cut(s)	978
CseI	GACGC	2 cut(s)	655, 834
CsiI	ACCWGGT	2 cut(s)	1054, 1072
CviAII	CATG	2 cut(s)	779, 1097
DdeI	CTNAG	5 cut(s)	99, 608, 718, 726, 966
DpnI	GATC	5 cut(s)	90, 342, 475, 550, 934
DpnII	GATC	5 cut(s)	88, 340, 473, 548, 932
DraI	TTTAAA	1 cut(s)	1029
EaeI	YGGCCR	1 cut(s)	1034
Eam1104I	CTCTTC	2 cut(s)	199, 799
EarI	CTCTTC	2 cut(s)	199, 799
Eco130I	CCWWGG	1 cut(s)	778
Eco31I	GGTCTC	1 cut(s)	674
Eco57I	CTGAAG	2 cut(s)	723, 1038
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	136
EcoRII	CCWGG	4 cut(s)	370, 587, 1054, 1072
EcoT14I	CCWWGG	1 cut(s)	778
ErhI	CCWWGG	1 cut(s)	778
FaeI	CATG	1 cut(s)	782
FaiI	YATR	8 cut(s)	780, 818, 920, 954, 956, 983, 1047, 1098
FatI	CATG	1 cut(s)	778
FauNDI	CATATG	1 cut(s)	954
FblI	GTMKAC	2 cut(s)	1051, 1069
Fnu4HI	GCNGC	2 cut(s)	109, 723
FokI	GGATG	3 cut(s)	17, 132, 350
Fsp4HI	GCNGC	2 cut(s)	109, 723
FspBI	CTAG	9 cut(s)	27, 45, 57, 231, 420, 579, 663, 888, 993
FspI	TGCGCA	1 cut(s)	509
GlaI	GCGC	1 cut(s)	509
GluI	GCNGC	2 cut(s)	109, 723
HaeIII	GGCC	4 cut(s)	55, 167, 948, 1036
HapII	CCGG	3 cut(s)	15, 267, 478
HgaI	GACGC	2 cut(s)	655, 834
HhaI	GCGC	1 cut(s)	510
Hin1II	CATG	1 cut(s)	782
Hin6I	GCGC	1 cut(s)	508
HinP1I	GCGC	1 cut(s)	508
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HinfI	GANTC	8 cut(s)	311, 379, 401, 416, 659, 783, 797, 856
HpaII	CCGG	3 cut(s)	15, 267, 478
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	4 cut(s)	670, 1052, 1070, 1094
Hpy188III	TCNNGA	5 cut(s)	45, 258, 335, 344, 801
Hpy8I	GTNNAC	4 cut(s)	670, 1052, 1070, 1094
Hpy99I	CGWCG	1 cut(s)	850
HpyAV	CCTTC	1 cut(s)	698
HpyCH4III	ACNGT	1 cut(s)	868
HpyCH4IV	ACGT	1 cut(s)	521
HpyCH4V	TGCA	6 cut(s)	108, 123, 185, 282, 615, 941
HpyF3I	CTNAG	5 cut(s)	99, 608, 718, 726, 966
HpySE526I	ACGT	1 cut(s)	521
Hsp92II	CATG	1 cut(s)	782
HspAI	GCGC	1 cut(s)	508
Kzo9I	GATC	5 cut(s)	88, 340, 473, 548, 932
LguI	GCTCTTC	1 cut(s)	199
LmnI	GCTCC	2 cut(s)	455, 1027
Lsp1109I	GCAGC	2 cut(s)	120, 709
LweI	GCATC	1 cut(s)	110
MabI	ACCWGGT	2 cut(s)	1054, 1072
MaeI	CTAG	9 cut(s)	27, 45, 57, 231, 420, 579, 663, 888, 993
MaeII	ACGT	1 cut(s)	521
MaeIII	GTNAC	3 cut(s)	358, 868, 875
MalI	GATC	5 cut(s)	90, 342, 475, 550, 934
MbiI	CCGCTC	1 cut(s)	192
MboI	GATC	5 cut(s)	88, 340, 473, 548, 932
MfeI	CAATTG	1 cut(s)	789
MflI	RGATCY	3 cut(s)	473, 548, 932
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	9 cut(s)	136, 156, 298, 484, 616, 696, 769, 789, 1039
MlyI	GAGTC	2 cut(s)	425, 850
MnlI	CCTC	9 cut(s)	63, 238, 375, 380, 474, 669, 800, 831, 960
MseI	TTAA	2 cut(s)	599, 1028
MspA1I	CMGCKG	1 cut(s)	722
MspCI	CTTAAG	1 cut(s)	598
MspI	CCGG	3 cut(s)	15, 267, 478
MspR9I	CCNGG	5 cut(s)	372, 478, 589, 1056, 1074
MunI	CAATTG	1 cut(s)	789
Mva1269I	GAATGC	1 cut(s)	185
MvaI	CCWGG	4 cut(s)	372, 589, 1056, 1074
NciI	CCSGG	1 cut(s)	478
NcoI	CCATGG	1 cut(s)	778
NdeI	CATATG	1 cut(s)	954
NdeII	GATC	5 cut(s)	88, 340, 473, 548, 932
NheI	GCTAGC	1 cut(s)	578
NlaIII	CATG	1 cut(s)	782
NlaIV	GGNNCC	1 cut(s)	54
NmuCI	GTSAC	2 cut(s)	358, 875
NsbI	TGCGCA	1 cut(s)	509
PciSI	GCTCTTC	1 cut(s)	199
PctI	GAATGC	1 cut(s)	185
PfeI	GAWTC	6 cut(s)	311, 379, 401, 659, 783, 797
PflMI	CCANNNNNTGG	1 cut(s)	1079
PfoI	TCCNGGA	1 cut(s)	476
PkrI	GCNGC	2 cut(s)	110, 724
PleI	GAGTC	2 cut(s)	424, 850
PpsI	GAGTC	2 cut(s)	424, 850
Psp1406I	AACGTT	1 cut(s)	521
Psp6I	CCWGG	4 cut(s)	370, 587, 1054, 1072
PspGI	CCWGG	4 cut(s)	370, 587, 1054, 1072
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	2 cut(s)	53, 947
PstI	CTGCAG	2 cut(s)	110, 943
PstNI	CAGNNNCTG	1 cut(s)	626
PsuI	RGATCY	3 cut(s)	473, 548, 932
PvuII	CAGCTG	1 cut(s)	722
SapI	GCTCTTC	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	599, 1028
SatI	GCNGC	2 cut(s)	109, 723
Sau3AI	GATC	5 cut(s)	88, 340, 473, 548, 932
Sau96I	GGNCC	2 cut(s)	53, 947
SchI	GAGTC	2 cut(s)	425, 850
ScrFI	CCNGG	5 cut(s)	372, 478, 589, 1056, 1074
SduI	GDGCHC	1 cut(s)	154
SexAI	ACCWGGT	2 cut(s)	1054, 1072
SfaNI	GCATC	1 cut(s)	110
SfcI	CTRYAG	2 cut(s)	106, 939
SmlI	CTYRAG	2 cut(s)	256, 598
SmoI	CTYRAG	2 cut(s)	256, 598
Sse9I	AATT	9 cut(s)	136, 156, 298, 484, 616, 696, 769, 789, 1039
SsiI	CCGC	1 cut(s)	190
SspMI	CTAG	9 cut(s)	27, 45, 57, 231, 420, 579, 663, 888, 993
StyD4I	CCNGG	5 cut(s)	370, 476, 587, 1054, 1072
StyI	CCWWGG	1 cut(s)	778
TaaI	ACNGT	1 cut(s)	868
TaiI	ACGT	1 cut(s)	524
TaqI	TCGA	2 cut(s)	773, 978
TasI	AATT	9 cut(s)	136, 156, 298, 484, 616, 696, 769, 789, 1039
TfiI	GAWTC	6 cut(s)	311, 379, 401, 659, 783, 797
Tru1I	TTAA	2 cut(s)	599, 1028
Tru9I	TTAA	2 cut(s)	599, 1028
TscAI	CASTG	3 cut(s)	130, 334, 1090
TseFI	GTSAC	2 cut(s)	358, 875
TseI	GCWGC	2 cut(s)	108, 722
Tsp45I	GTSAC	2 cut(s)	358, 875
TspDTI	ATGAA	5 cut(s)	303, 639, 755, 987, 998
TspGWI	ACGGA	1 cut(s)	627
TspRI	CASTG	3 cut(s)	130, 334, 1090
Van91I	CCANNNNNTGG	1 cut(s)	1079
Vha464I	CTTAAG	1 cut(s)	598
XapI	RAATTY	4 cut(s)	136, 484, 696, 1039
XbaI	TCTAGA	1 cut(s)	44
XmiI	GTMKAC	2 cut(s)	1051, 1069
XspI	CTAG	9 cut(s)	27, 45, 57, 231, 420, 579, 663, 888, 993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.