Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026376.1

Orthogroup ID

OG0002390

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1413

Gene Structure 1413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026376.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

aatcaggatggtcagcgacgctacaacatggatggaattgcagaggtattgctagcactggagaggattgaacaagatgaagagctatcatttgagcaaatacttgttcttgagaccaatttgttcctgaatggcctaaacttctatgatcagcatagagacatgagactggatatcgataacatgtcatatgaggaattgttagcattagaagagagaatgggttctgtaagcacagcattgccagaagaagcactgacagattgcattaagaaaagcatctatcagtctgaacctccagaggatgcatccataggctgtgataataaggatgaagtcaaatgcagtatctgccaggaggaatatgtggctggagacgaagttgggaggttgcggtgtgagcatagttatcatttagtctgcgtaaatcaatggctgcgggttaagaattggtgccctatatgcaaggcggcagcggcagcggcaacagctgcggctgaaccctcgtcaccgtcaccatcatcacccgcatcaccatattccacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

182

Amino Acids

20.38

Weight (kDa)

4.39

Isoelectric Point (pI)

61.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31450 AT4G31450 AT5G10650 AT5G10650 AT5G10650 AT5G24870 AT5G24870 AT5G24870
fragaria_vesca	FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760
malus_domestica	MD08G1128400.v1.1 MD15G1107900.v1.1
prunus_persica	Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1
pyrus_communis	pycom08g10730 pycom15g09860
rosa_chinensis	RchiOBHm_Chr6g0304981
rosa_laevigata	RLG00000010931
rosa_multiflora	Rmu_co8384967.1_g000001 Rmu_sc0026376.1_g000001 Rmu_sc0028342.1_g000002
rosa_roxburghii	Rroxscaffold_7G00163300
rosa_rugosa	Rorug06G0336500 Rorug06G0336600 Rorug06G0336600
rosa_samantha	Rh6AG447900 Rh6BG453000 Rh6CG461600 Rh6DG448600
rosa_wichuraiana	Rw6G039010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	453
AciI	CCGC	7 cut(s)	394, 439, 470, 476, 482, 494, 528
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	1 cut(s)	71
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	2 cut(s)	85, 491
AluI	AGCT	2 cut(s)	85, 491
Alw26I	GTCTC	4 cut(s)	107, 153, 160, 369
AlwNI	CAGNNNCTG	1 cut(s)	351
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	4 cut(s)	436, 473, 479, 491
Asp700I	GAANNNNTTC	1 cut(s)	223
AsuHPI	GGTGA	4 cut(s)	501, 507, 516, 525
AsuNHI	GCTAGC	1 cut(s)	52
BaeGI	GKGCMC	1 cut(s)	458
BanI	GGYRCC	1 cut(s)	453
BbvI	GCAGC	4 cut(s)	423, 478, 485, 491
BccI	CCATC	3 cut(s)	2, 26, 526
BciT130I	CCWGG	1 cut(s)	356
BclI	TGATCA	1 cut(s)	148
BcoDI	GTCTC	4 cut(s)	107, 153, 160, 369
BfaI	CTAG	1 cut(s)	53
BisI	GCNGC	8 cut(s)	437, 471, 474, 477, 480, 483, 492, 495
BlsI	GCNGC	8 cut(s)	438, 472, 475, 478, 481, 484, 493, 496
Bme1390I	CCNGG	1 cut(s)	356
BmiI	GGNNCC	1 cut(s)	455
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	4 cut(s)	288, 295, 317, 539
BmtI	GCTAGC	1 cut(s)	56
BpmI	CTGGAG	3 cut(s)	80, 282, 393
BpuEI	CTTGAG	1 cut(s)	131
Bsa29I	ATCGAT	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	107
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bse1I	ACTGG	2 cut(s)	63, 174
Bse3DI	GCAATG	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	356
BseCI	ATCGAT	1 cut(s)	177
BseGI	GGATG	5 cut(s)	13, 37, 308, 310, 337
BseMI	GCAATG	1 cut(s)	239
BseNI	ACTGG	2 cut(s)	63, 174
BseSI	GKGCMC	1 cut(s)	458
BseXI	GCAGC	4 cut(s)	423, 478, 485, 491
BshFI	GGCC	1 cut(s)	135
BshNI	GGYRCC	1 cut(s)	453
BshVI	ATCGAT	1 cut(s)	177
BsmAI	GTCTC	4 cut(s)	107, 153, 160, 369
BsmBI	CGTCTC	1 cut(s)	369
BsnI	GGCC	1 cut(s)	135
Bso31I	GGTCTC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	458
Bsp143I	GATC	1 cut(s)	148
BspACI	CCGC	7 cut(s)	394, 439, 470, 476, 482, 494, 528
BspANI	GGCC	1 cut(s)	135
BspDI	ATCGAT	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	455
BspOI	GCTAGC	1 cut(s)	56
BspQI	GCTCTTC	1 cut(s)	75
BspT107I	GGYRCC	1 cut(s)	453
BspTNI	GGTCTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	239
BsrI	ACTGG	2 cut(s)	63, 174
BssMI	GATC	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	1 cut(s)	513
Bst6I	CTCTTC	2 cut(s)	75, 207
BstAPI	GCANNNNNTGC	2 cut(s)	351, 491
BstC8I	GCNNGC	1 cut(s)	54
BstF5I	GGATG	5 cut(s)	13, 37, 308, 310, 337
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	4 cut(s)	107, 153, 160, 369
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	8 cut(s)	351, 400, 462, 476, 479, 482, 488, 491
BstNI	CCWGG	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	354
BstSLI	GKGCMC	1 cut(s)	458
BstV1I	GCAGC	4 cut(s)	423, 478, 485, 491
Bsu15I	ATCGAT	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	135
BsuTUI	ATCGAT	1 cut(s)	177
BtsCI	GGATG	5 cut(s)	13, 37, 308, 310, 337
BtsIMutI	CAGTG	2 cut(s)	56, 254
Cac8I	GCNNGC	1 cut(s)	54
CaiI	CAGNNNCTG	1 cut(s)	351
ClaI	ATCGAT	1 cut(s)	177
CseI	GACGC	1 cut(s)	27
CviAII	CATG	3 cut(s)	28, 163, 184
CviJI	RGCY	7 cut(s)	85, 135, 318, 371, 436, 491, 497
CviKI_1	RGCY	7 cut(s)	85, 135, 318, 371, 436, 491, 497
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eam1104I	CTCTTC	2 cut(s)	75, 207
EarI	CTCTTC	2 cut(s)	75, 207
Eco31I	GGTCTC	1 cut(s)	107
Eco32I	GATATC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	354
EcoRV	GATATC	1 cut(s)	175
EcoT22I	ATGCAT	1 cut(s)	310
Esp3I	CGTCTC	1 cut(s)	369
FaeI	CATG	3 cut(s)	31, 166, 187
FatI	CATG	3 cut(s)	27, 162, 183
FauI	CCCGC	2 cut(s)	432, 535
FauNDI	CATATG	1 cut(s)	190
FbaI	TGATCA	1 cut(s)	148
Fnu4HI	GCNGC	8 cut(s)	437, 471, 474, 477, 480, 483, 492, 495
FokI	GGATG	5 cut(s)	20, 44, 295, 317, 344
Fsp4HI	GCNGC	8 cut(s)	437, 471, 474, 477, 480, 483, 492, 495
FspBI	CTAG	1 cut(s)	53
GluI	GCNGC	8 cut(s)	437, 471, 474, 477, 480, 483, 492, 495
GsuI	CTGGAG	3 cut(s)	80, 282, 393
HaeIII	GGCC	1 cut(s)	135
HgaI	GACGC	1 cut(s)	27
Hin1II	CATG	3 cut(s)	31, 166, 187
HphI	GGTGA	4 cut(s)	501, 507, 516, 525
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	4 cut(s)	5, 110, 127, 299
Hpy99I	CGWCG	1 cut(s)	21
HpyCH4III	ACNGT	1 cut(s)	513
HpyCH4V	TGCA	5 cut(s)	41, 267, 308, 345, 465
HpyF10VI	GCNNNNNNNGC	8 cut(s)	351, 400, 462, 476, 479, 482, 488, 491
Hsp92II	CATG	3 cut(s)	31, 166, 187
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	148
LguI	GCTCTTC	1 cut(s)	75
LpnPI	CCDG	8 cut(s)	44, 140, 155, 258, 312, 341, 357, 368
Lsp1109I	GCAGC	4 cut(s)	423, 478, 485, 491
LweI	GCATC	4 cut(s)	288, 295, 317, 539
MaeI	CTAG	1 cut(s)	53
MaeIII	GTNAC	2 cut(s)	507, 513
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	3 cut(s)	92, 224, 260
MhlI	GDGCHC	1 cut(s)	458
MluCI	AATT	4 cut(s)	36, 118, 197, 448
MnlI	CCTC	8 cut(s)	37, 57, 187, 295, 306, 352, 381, 514
Mph1103I	ATGCAT	1 cut(s)	310
MroXI	GAANNNNTTC	1 cut(s)	223
MseI	TTAA	2 cut(s)	270, 444
MspA1I	CMGCKG	3 cut(s)	476, 482, 491
MspR9I	CCNGG	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	8 cut(s)	351, 400, 462, 476, 479, 482, 488, 491
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	1 cut(s)	148
NheI	GCTAGC	1 cut(s)	52
NlaIII	CATG	3 cut(s)	31, 166, 187
NlaIV	GGNNCC	1 cut(s)	455
NmuCI	GTSAC	2 cut(s)	507, 513
NsiI	ATGCAT	1 cut(s)	310
NspI	RCATGY	1 cut(s)	187
PciI	ACATGT	1 cut(s)	183
PciSI	GCTCTTC	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	223
PkrI	GCNGC	8 cut(s)	438, 472, 475, 478, 481, 484, 493, 496
PscI	ACATGT	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	1 cut(s)	455
PstNI	CAGNNNCTG	1 cut(s)	351
PvuII	CAGCTG	1 cut(s)	491
SapI	GCTCTTC	1 cut(s)	75
SaqAI	TTAA	2 cut(s)	270, 444
SatI	GCNGC	8 cut(s)	437, 471, 474, 477, 480, 483, 492, 495
Sau3AI	GATC	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	1 cut(s)	458
SetI	ASST	5 cut(s)	48, 87, 298, 392, 493
SfaNI	GCATC	4 cut(s)	288, 295, 317, 539
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	4 cut(s)	36, 118, 197, 448
SsiI	CCGC	7 cut(s)	394, 439, 470, 476, 482, 494, 528
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	354
TaaI	ACNGT	1 cut(s)	513
TaqI	TCGA	1 cut(s)	177
TasI	AATT	4 cut(s)	36, 118, 197, 448
TauI	GCSGC	4 cut(s)	473, 479, 485, 497
Tru1I	TTAA	2 cut(s)	270, 444
Tru9I	TTAA	2 cut(s)	270, 444
TscAI	CASTG	2 cut(s)	63, 261
TseFI	GTSAC	2 cut(s)	507, 513
TseI	GCWGC	4 cut(s)	436, 473, 479, 491
Tsp45I	GTSAC	2 cut(s)	507, 513
TspDTI	ATGAA	2 cut(s)	93, 348
TspRI	CASTG	2 cut(s)	63, 261
XceI	RCATGY	1 cut(s)	187
XmnI	GAANNNNTTC	1 cut(s)	223
XspI	CTAG	1 cut(s)	53
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.