Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002390

Physical Location & Seq

Genomic Coordinates Forward (+)

12042921 .. 12047431

Gene Structure 4511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1128400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

ATGGATGAGTATTTTGGTAAAAGAGCTGTTGATGGGCTCGTCTCTAAAAAGGGATCTGGTCTTGTTTTAAGGGAAACCCCCAATAGAGACCGCAATGCTCAGCTCTGTAGCCGGTTGGGATGTAGTGGAAGATTGAACTCTGTAAAAAGTGCTCAAATTGAAAAGGCCAAACCTTCAAGGCCAGTATTTCGCTCTTCGTCAAGTGGGAAAGAGATAATTGGAAGTTCCTCGAGGTCTTGCGTTGGTGTTGGCAACACAAGCAAGTCCATTGATGATCCAGAAGTTTCAGAAATCACTCCGCCACCTGGAAAGATTCAAAGAGGGCTTCACCCTGAATTTCAAAATTCTGTGTCTAGTGAAGTCACTTTGATGGAAGTTGGAAGCTCTGGTGTCGCATCAAATACAAGATCTCGAAGGAGTTTCAATCAGAGATCTGGATTGCGCAGCCAAGATTCCATAGTGGGTTCTAATGTTTCTATGGGATCTAAAAACATCATCCAGACACGGGCTAGCACAGCCAGGAATGGTTTAAGAAATCTAAGATGTAATTCAGTATCTGACGTTGTCCCTTCCAGTTGTTCATCATCAGATTCAAGCCTTGGTCAGAGAGAGACCATAAAGCGAAGAACTTCCGAAGGAGAAAGTAGTTCTGCTGCTAAGGGGAAGAAAATGAATGGGTCATCGTCAGCACAAAAACCCAGTTCTAGCCATGGCATCTCAACTTCTGATTCAAGAAGAGCTAGAAATATGCCTTCTAACAGGGATAACAATGGTGTTGCATCAGTTAGGACTCGGAGAACTGTCACTAGTCACTCGAGGGGAAAGCTGCTTCCTAATCAAGGAAGTGGAAACAATTCGTCATCCAGTGGATCCTCTGCAGGTCCACATACGTCTGAACCTGAAATGTCTATCAACTCAAATGCTTCTAGTTCATCACAACGGTCATCTGATGAAGTTCCTTTAATTCGGCCGAATTCTTATAGCCGGCCAGGCAGTAGCAGTGGGACTTTACATGGCATTCTGCGAGCTGGTGCTTCAGATGTTGGGTTTTCCCGCTCTCTAAGGAACCAGGAGGGACTGCGACGCTACAACATGGATGGGATAGCAGAGGTATTGCTAGCACTTGAGAGAATTGAACACGATGAGGAGTTAACATTTGAGCAAATACTTGTTCTTGAGACCAATTTGTTCCTGAATGGCCTAAACTTCTACGATCAGCACAGAGACATGAGACTGGATATCGACAACATGACATATGAGGAATTATTAGCTCTAGAAGAGAGGATGGGTACCGTCAGCACAGCATTGCCAGAAGAAGCATTGTCCGATTGCCTTAAGAAAAGCATCTATCAGTTTACACCCCAAGAAGATGCATCCGTAAGCTGCGATGGGAAGAAGGCGGATGTCAAATGCAGTATCTGCCAGGAAGAGTACGTGGCTGGAGATGAAGTTGGAAGATTGCGGTGCGAGCATAGATTTCACGTTGTCTGCGTAAACCAGTGGCTGCGGCTTAAGAATTGGTGCCCTATATGCAAAGGAGCAGCAGCAGCAGCAGCTCCAGCACCCTCGCCCTCTCCCTCGCCACCCTCCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

532

Amino Acids

57.2

Weight (kDa)

9.12

Isoelectric Point (pI)

61.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	469 - 512	4.6e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	470 - 512	6.3e-12	Ring finger domain
zf-C3HC4_2	PF13923	470 - 511	1.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	471 - 498	1.2e-06	RING-like zinc finger
zf-C3HC4	PF00097	471 - 511	7.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31450 AT4G31450 AT5G10650 AT5G10650 AT5G10650 AT5G24870 AT5G24870 AT5G24870
fragaria_vesca	FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760
malus_domestica	MD08G1128400.v1.1 MD15G1107900.v1.1
prunus_persica	Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1
pyrus_communis	pycom08g10730 pycom15g09860
rosa_chinensis	RchiOBHm_Chr6g0304981
rosa_laevigata	RLG00000010931
rosa_multiflora	Rmu_co8384967.1_g000001 Rmu_sc0026376.1_g000001 Rmu_sc0028342.1_g000002
rosa_roxburghii	Rroxscaffold_7G00163300
rosa_rugosa	Rorug06G0336500 Rorug06G0336600 Rorug06G0336600
rosa_samantha	Rh6AG447900 Rh6BG453000 Rh6CG461600 Rh6DG448600
rosa_wichuraiana	Rw6G039010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	229
Acc16I	TGCGCA	1 cut(s)	443
Acc36I	ACCTGC	1 cut(s)	869
Acc65I	GGTACC	1 cut(s)	1289
AccB1I	GGYRCC	2 cut(s)	1289, 1521
AccBSI	CCGCTC	1 cut(s)	1056
AciI	CCGC	6 cut(s)	91, 299, 1054, 1400, 1462, 1507
AclWI	GGATC	5 cut(s)	61, 269, 490, 864, 877
AcoI	YGGCCR	2 cut(s)	968, 986
AcsI	RAATTY	3 cut(s)	335, 343, 973
AcuI	CTGAAG	1 cut(s)	1020
AfaI	GTAC	2 cut(s)	1291, 1433
AfiI	CCNNNNNNNGG	3 cut(s)	305, 505, 839
AflII	CTTAAG	2 cut(s)	1334, 1511
AgsI	TTSAA	9 cut(s)	136, 161, 177, 317, 341, 424, 594, 732, 1136
AhlI	ACTAGT	1 cut(s)	806
AjnI	CCWGG	5 cut(s)	304, 518, 988, 1068, 1422
AluBI	AGCT	9 cut(s)	26, 103, 384, 740, 826, 1028, 1271, 1383, 1556
AluI	AGCT	9 cut(s)	26, 103, 384, 740, 826, 1028, 1271, 1383, 1556
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	6 cut(s)	46, 81, 605, 1172, 1218, 1225
AlwI	GGATC	5 cut(s)	61, 269, 490, 864, 877
AlwNI	CAGNNNCTG	3 cut(s)	557, 1419, 1504
Ama87I	CYCGRG	2 cut(s)	229, 814
AoxI	GGCC	5 cut(s)	165, 179, 968, 986, 1198
ApoI	RAATTY	3 cut(s)	335, 343, 973
Asp700I	GAANNNNTTC	2 cut(s)	628, 853
Asp718I	GGTACC	1 cut(s)	1289
AspLEI	GCGC	1 cut(s)	444
AspS9I	GGNCC	1 cut(s)	881
AsuHPI	GGTGA	1 cut(s)	320
AsuNHI	GCTAGC	2 cut(s)	509, 1117
AvaI	CYCGRG	2 cut(s)	229, 814
AvaII	GGWCC	1 cut(s)	881
BaeGI	GKGCMC	1 cut(s)	1526
BamHI	GGATCC	1 cut(s)	869
BanI	GGYRCC	2 cut(s)	1289, 1521
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	154
BccI	CCATC	5 cut(s)	26, 364, 1091, 1279, 1382
BciT130I	CCWGG	5 cut(s)	306, 520, 990, 1070, 1424
BcoDI	GTCTC	6 cut(s)	46, 81, 605, 1172, 1218, 1225
BcuI	ACTAGT	1 cut(s)	806
BfaI	CTAG	8 cut(s)	354, 510, 705, 741, 807, 927, 1118, 1274
BfmI	CTRYAG	2 cut(s)	106, 876
BfrI	CTTAAG	2 cut(s)	1334, 1511
BfuAI	ACCTGC	1 cut(s)	869
BglI	GCCNNNNNGGC	1 cut(s)	990
BglII	AGATCT	2 cut(s)	407, 431
BlpI	GCTNAGC	1 cut(s)	99
Bme1390I	CCNGG	5 cut(s)	306, 520, 990, 1070, 1424
Bme18I	GGWCC	1 cut(s)	881
BmeT110I	CYCGRG	2 cut(s)	229, 814
BmgT120I	GGNCC	1 cut(s)	881
BmiI	GGNNCC	4 cut(s)	871, 1067, 1291, 1523
BmrFI	CCNGG	5 cut(s)	306, 520, 990, 1070, 1424
BmrI	ACTGGG	1 cut(s)	693
BmsI	GCATC	6 cut(s)	404, 723, 788, 1353, 1360, 1382
BmtI	GCTAGC	2 cut(s)	513, 1121
BmuI	ACTGGG	1 cut(s)	693
BpmI	CTGGAG	2 cut(s)	1461, 1542
Bpu10I	CCTNAGC	1 cut(s)	657
Bpu1102I	GCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	2 cut(s)	1145, 1196
BsaAI	YACGTR	1 cut(s)	1435
BsaI	GGTCTC	3 cut(s)	81, 605, 1172
BsaJI	CCNNGG	2 cut(s)	598, 709
BsaXI	ACNNNNNCTCC	2 cut(s)	1434, 1464
Bsc4I	CCNNNNNNNGG	3 cut(s)	305, 505, 839
Bse118I	RCCGGY	2 cut(s)	111, 984
Bse1I	ACTGG	6 cut(s)	182, 573, 699, 864, 1239, 1498
Bse3DI	GCAATG	2 cut(s)	100, 1304
BseBI	CCWGG	5 cut(s)	306, 520, 990, 1070, 1424
BseDI	CCNNGG	2 cut(s)	598, 709
BseGI	GGATG	8 cut(s)	10, 125, 495, 860, 1102, 1290, 1373, 1408
BseLI	CCNNNNNNNGG	3 cut(s)	305, 505, 839
BseMI	GCAATG	2 cut(s)	100, 1304
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	6 cut(s)	182, 573, 699, 864, 1239, 1498
BseRI	GAGGAG	1 cut(s)	1160
BseSI	GKGCMC	1 cut(s)	1526
BseX3I	CGGCCG	1 cut(s)	968
Bsh1285I	CGRYCG	1 cut(s)	971
BshFI	GGCC	5 cut(s)	167, 181, 970, 988, 1200
BshNI	GGYRCC	2 cut(s)	1289, 1521
BsiEI	CGRYCG	1 cut(s)	971
BsiHKAI	GWGCWC	1 cut(s)	154
BsiHKCI	CYCGRG	2 cut(s)	229, 814
BsiSI	CCGG	2 cut(s)	112, 985
BslFI	GGGAC	3 cut(s)	551, 1018, 1089
BslI	CCNNNNNNNGG	3 cut(s)	305, 505, 839
BsmAI	GTCTC	6 cut(s)	46, 81, 605, 1172, 1218, 1225
BsmBI	CGTCTC	1 cut(s)	46
BsmFI	GGGAC	3 cut(s)	551, 1018, 1089
BsmI	GAATGC	1 cut(s)	1017
BsnI	GGCC	5 cut(s)	167, 181, 970, 988, 1200
Bso31I	GGTCTC	3 cut(s)	81, 605, 1172
BsoBI	CYCGRG	2 cut(s)	229, 814
Bsp1286I	GDGCHC	3 cut(s)	39, 154, 1526
Bsp143I	GATC	7 cut(s)	53, 274, 407, 431, 482, 869, 1213
Bsp1720I	GCTNAGC	1 cut(s)	99
Bsp19I	CCATGG	1 cut(s)	709
BspACI	CCGC	6 cut(s)	91, 299, 1054, 1400, 1462, 1507
BspANI	GGCC	5 cut(s)	167, 181, 970, 988, 1200
BspCNI	CTCAG	1 cut(s)	112
BspLI	GGNNCC	4 cut(s)	871, 1067, 1291, 1523
BspMAI	CTGCAG	1 cut(s)	880
BspMI	ACCTGC	1 cut(s)	869
BspOI	GCTAGC	2 cut(s)	513, 1121
BspPI	GGATC	5 cut(s)	61, 269, 490, 864, 877
BspQI	GCTCTTC	2 cut(s)	199, 730
BspT107I	GGYRCC	2 cut(s)	1289, 1521
BspTI	CTTAAG	2 cut(s)	1334, 1511
BspTNI	GGTCTC	3 cut(s)	81, 605, 1172
BsrBI	CCGCTC	1 cut(s)	1056
BsrDI	GCAATG	2 cut(s)	100, 1304
BsrFI	RCCGGY	2 cut(s)	111, 984
BsrI	ACTGG	6 cut(s)	182, 573, 699, 864, 1239, 1498
BssAI	RCCGGY	2 cut(s)	111, 984
BssECI	CCNNGG	2 cut(s)	598, 709
BssMI	GATC	7 cut(s)	53, 274, 407, 431, 482, 869, 1213
BssT1I	CCWWGG	2 cut(s)	598, 709
Bst2UI	CCWGG	5 cut(s)	306, 520, 990, 1070, 1424
Bst4CI	ACNGT	3 cut(s)	802, 942, 1294
Bst6I	CTCTTC	4 cut(s)	199, 730, 1272, 1422
BstAFI	CTTAAG	2 cut(s)	1334, 1511
BstAPI	GCANNNNNTGC	1 cut(s)	1419
BstBAI	YACGTR	1 cut(s)	1435
BstC8I	GCNNGC	5 cut(s)	511, 986, 1026, 1119, 1469
BstDEI	CTNAG	4 cut(s)	99, 539, 657, 1061
BstDSI	CCRYGG	1 cut(s)	709
BstENI	CCTNNNNNAGG	1 cut(s)	837
BstF5I	GGATG	8 cut(s)	10, 125, 495, 860, 1102, 1290, 1373, 1408
BstHHI	GCGC	1 cut(s)	444
BstKTI	GATC	7 cut(s)	56, 277, 410, 434, 485, 872, 1216
BstMAI	GTCTC	6 cut(s)	46, 81, 605, 1172, 1218, 1225
BstMBI	GATC	7 cut(s)	53, 274, 407, 431, 482, 869, 1213
BstMCI	CGRYCG	1 cut(s)	971
BstNI	CCWGG	5 cut(s)	306, 520, 990, 1070, 1424
BstSCI	CCNGG	5 cut(s)	304, 518, 988, 1068, 1422
BstSFI	CTRYAG	2 cut(s)	106, 876
BstSLI	GKGCMC	1 cut(s)	1526
BstX2I	RGATCY	5 cut(s)	53, 407, 431, 482, 869
BstYI	RGATCY	5 cut(s)	53, 407, 431, 482, 869
BstZI	CGGCCG	1 cut(s)	968
BsuRI	GGCC	5 cut(s)	167, 181, 970, 988, 1200
BtgI	CCRYGG	1 cut(s)	709
BtgZI	GCGATG	1 cut(s)	1401
BtsCI	GGATG	8 cut(s)	10, 125, 495, 860, 1102, 1290, 1373, 1408
BtsI	GCAGTG	1 cut(s)	1006
BtsIMutI	CAGTG	3 cut(s)	871, 1006, 1505
BveI	ACCTGC	1 cut(s)	869
Cac8I	GCNNGC	5 cut(s)	511, 986, 1026, 1119, 1469
CaiI	CAGNNNCTG	3 cut(s)	557, 1419, 1504
CfoI	GCGC	1 cut(s)	444
Cfr10I	RCCGGY	2 cut(s)	111, 984
Cfr13I	GGNCC	1 cut(s)	881
CseI	GACGC	1 cut(s)	1092
Csp6I	GTAC	2 cut(s)	1290, 1432
CviAII	CATG	5 cut(s)	710, 1013, 1093, 1228, 1249
CviQI	GTAC	2 cut(s)	1290, 1432
DdeI	CTNAG	4 cut(s)	99, 539, 657, 1061
DpnI	GATC	7 cut(s)	55, 276, 409, 433, 484, 871, 1215
DpnII	GATC	7 cut(s)	53, 274, 407, 431, 482, 869, 1213
EaeI	YGGCCR	2 cut(s)	968, 986
EagI	CGGCCG	1 cut(s)	968
Eam1104I	CTCTTC	4 cut(s)	199, 730, 1272, 1422
EarI	CTCTTC	4 cut(s)	199, 730, 1272, 1422
EciI	GGCGGA	2 cut(s)	288, 1415
EclXI	CGGCCG	1 cut(s)	968
Eco130I	CCWWGG	2 cut(s)	598, 709
Eco24I	GRGCYC	1 cut(s)	39
Eco31I	GGTCTC	3 cut(s)	81, 605, 1172
Eco32I	GATATC	1 cut(s)	1240
Eco47I	GGWCC	1 cut(s)	881
Eco52I	CGGCCG	1 cut(s)	968
Eco57I	CTGAAG	1 cut(s)	1020
Eco88I	CYCGRG	2 cut(s)	229, 814
EcoNI	CCTNNNNNAGG	1 cut(s)	837
EcoRI	GAATTC	1 cut(s)	973
EcoRII	CCWGG	5 cut(s)	304, 518, 988, 1068, 1422
EcoRV	GATATC	1 cut(s)	1240
EcoT14I	CCWWGG	2 cut(s)	598, 709
EcoT22I	ATGCAT	1 cut(s)	1375
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	2 cut(s)	598, 709
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	5 cut(s)	713, 1016, 1096, 1231, 1252
FaqI	GGGAC	3 cut(s)	551, 1018, 1089
FatI	CATG	5 cut(s)	709, 1012, 1092, 1227, 1248
FauI	CCCGC	1 cut(s)	1061
FauNDI	CATATG	1 cut(s)	1255
FokI	GGATG	8 cut(s)	17, 132, 482, 847, 1109, 1297, 1360, 1415
FriOI	GRGCYC	1 cut(s)	39
FspBI	CTAG	8 cut(s)	354, 510, 705, 741, 807, 927, 1118, 1274
FspI	TGCGCA	1 cut(s)	443
GlaI	GCGC	1 cut(s)	443
GsuI	CTGGAG	2 cut(s)	1461, 1542
HaeIII	GGCC	5 cut(s)	167, 181, 970, 988, 1200
HapII	CCGG	2 cut(s)	112, 985
HgaI	GACGC	1 cut(s)	1092
HhaI	GCGC	1 cut(s)	444
Hin1II	CATG	5 cut(s)	713, 1016, 1096, 1231, 1252
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HincII	GTYRAC	1 cut(s)	1152
HindII	GTYRAC	1 cut(s)	1152
HinfI	GANTC	5 cut(s)	313, 452, 590, 728, 790
HpaI	GTTAAC	1 cut(s)	1152
HpaII	CCGG	2 cut(s)	112, 985
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	4 cut(s)	884, 1152, 1356, 1495
Hpy188III	TCNNGA	8 cut(s)	278, 411, 435, 499, 732, 1175, 1192, 1274
Hpy8I	GTNNAC	4 cut(s)	884, 1152, 1356, 1495
Hpy99I	CGWCG	1 cut(s)	1086
HpyAV	CCTTC	6 cut(s)	183, 408, 579, 629, 762, 1390
HpyCH4III	ACNGT	3 cut(s)	802, 942, 1294
HpyCH4IV	ACGT	4 cut(s)	561, 890, 1434, 1482
HpyCH4V	TGCA	5 cut(s)	779, 878, 1373, 1413, 1533
HpyF3I	CTNAG	4 cut(s)	99, 539, 657, 1061
HpySE526I	ACGT	4 cut(s)	561, 890, 1434, 1482
Hsp92II	CATG	5 cut(s)	713, 1016, 1096, 1231, 1252
HspAI	GCGC	1 cut(s)	442
KpnI	GGTACC	1 cut(s)	1293
KroI	GCCGGC	1 cut(s)	984
KroNI	GCCGGC	1 cut(s)	986
KspAI	GTTAAC	1 cut(s)	1152
Kzo9I	GATC	7 cut(s)	53, 274, 407, 431, 482, 869, 1213
LguI	GCTCTTC	2 cut(s)	199, 730
LmnI	GCTCC	2 cut(s)	1538, 1561
LweI	GCATC	6 cut(s)	404, 723, 788, 1353, 1360, 1382
MaeI	CTAG	8 cut(s)	354, 510, 705, 741, 807, 927, 1118, 1274
MaeII	ACGT	4 cut(s)	561, 890, 1434, 1482
MaeIII	GTNAC	3 cut(s)	361, 802, 809
MalI	GATC	7 cut(s)	55, 276, 409, 433, 484, 871, 1215
MbiI	CCGCTC	1 cut(s)	1056
MboI	GATC	7 cut(s)	53, 274, 407, 431, 482, 869, 1213
MflI	RGATCY	5 cut(s)	53, 407, 431, 482, 869
MhlI	GDGCHC	3 cut(s)	39, 154, 1526
MlyI	GAGTC	1 cut(s)	784
MmeI	TCCRAC	2 cut(s)	358, 1432
Mph1103I	ATGCAT	1 cut(s)	1375
MroNI	GCCGGC	1 cut(s)	984
MroXI	GAANNNNTTC	2 cut(s)	628, 853
MseI	TTAA	6 cut(s)	68, 530, 962, 1151, 1335, 1512
MslI	CAYNNNNRTG	1 cut(s)	368
MspCI	CTTAAG	2 cut(s)	1334, 1511
MspI	CCGG	2 cut(s)	112, 985
MspR9I	CCNGG	5 cut(s)	306, 520, 990, 1070, 1424
Mva1269I	GAATGC	1 cut(s)	1017
MvaI	CCWGG	5 cut(s)	306, 520, 990, 1070, 1424
NaeI	GCCGGC	1 cut(s)	986
NcoI	CCATGG	1 cut(s)	709
NdeI	CATATG	1 cut(s)	1255
NdeII	GATC	7 cut(s)	53, 274, 407, 431, 482, 869, 1213
NgoMIV	GCCGGC	1 cut(s)	984
NheI	GCTAGC	2 cut(s)	509, 1117
NlaIII	CATG	5 cut(s)	713, 1016, 1096, 1231, 1252
NlaIV	GGNNCC	4 cut(s)	871, 1067, 1291, 1523
NmuCI	GTSAC	3 cut(s)	361, 802, 809
NsbI	TGCGCA	1 cut(s)	443
NsiI	ATGCAT	1 cut(s)	1375
PaeR7I	CTCGAG	2 cut(s)	229, 814
PciSI	GCTCTTC	2 cut(s)	199, 730
PcsI	WCGNNNNNNNCGW	1 cut(s)	1488
PctI	GAATGC	1 cut(s)	1017
PdiI	GCCGGC	1 cut(s)	986
PdmI	GAANNNNTTC	2 cut(s)	628, 853
PfeI	GAWTC	4 cut(s)	313, 452, 590, 728
PflFI	GACNNNGTC	1 cut(s)	563
PleI	GAGTC	1 cut(s)	784
PpsI	GAGTC	1 cut(s)	784
Ppu21I	YACGTR	1 cut(s)	1435
Psp6I	CCWGG	5 cut(s)	304, 518, 988, 1068, 1422
PspGI	CCWGG	5 cut(s)	304, 518, 988, 1068, 1422
PspN4I	GGNNCC	4 cut(s)	871, 1067, 1291, 1523
PspPI	GGNCC	1 cut(s)	881
PspXI	VCTCGAGB	2 cut(s)	229, 814
PstI	CTGCAG	1 cut(s)	880
PstNI	CAGNNNCTG	3 cut(s)	557, 1419, 1504
PsuI	RGATCY	5 cut(s)	53, 407, 431, 482, 869
PsyI	GACNNNGTC	1 cut(s)	563
RsaI	GTAC	2 cut(s)	1291, 1433
RsaNI	GTAC	2 cut(s)	1290, 1432
RseI	CAYNNNNRTG	1 cut(s)	368
SapI	GCTCTTC	2 cut(s)	199, 730
SaqAI	TTAA	6 cut(s)	68, 530, 962, 1151, 1335, 1512
Sau3AI	GATC	7 cut(s)	53, 274, 407, 431, 482, 869, 1213
Sau96I	GGNCC	1 cut(s)	881
SchI	GAGTC	1 cut(s)	784
ScrFI	CCNGG	5 cut(s)	306, 520, 990, 1070, 1424
SduI	GDGCHC	3 cut(s)	39, 154, 1526
SfaNI	GCATC	6 cut(s)	404, 723, 788, 1353, 1360, 1382
SfcI	CTRYAG	2 cut(s)	106, 876
Sfr274I	CTCGAG	2 cut(s)	229, 814
SinI	GGWCC	1 cut(s)	881
SlaI	CTCGAG	2 cut(s)	229, 814
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	6 cut(s)	229, 814, 1124, 1175, 1334, 1511
SmoI	CTYRAG	6 cut(s)	229, 814, 1124, 1175, 1334, 1511
SpeI	ACTAGT	1 cut(s)	806
SsiI	CCGC	6 cut(s)	91, 299, 1054, 1400, 1462, 1507
SspMI	CTAG	8 cut(s)	354, 510, 705, 741, 807, 927, 1118, 1274
StyD4I	CCNGG	5 cut(s)	304, 518, 988, 1068, 1422
StyI	CCWWGG	2 cut(s)	598, 709
TaaI	ACNGT	3 cut(s)	802, 942, 1294
TaiI	ACGT	4 cut(s)	564, 893, 1437, 1485
TaqI	TCGA	4 cut(s)	230, 412, 815, 1242
TauI	GCSGC	1 cut(s)	1510
TfiI	GAWTC	4 cut(s)	313, 452, 590, 728
Tru1I	TTAA	6 cut(s)	68, 530, 962, 1151, 1335, 1512
Tru9I	TTAA	6 cut(s)	68, 530, 962, 1151, 1335, 1512
TscAI	CASTG	3 cut(s)	871, 1006, 1505
TseFI	GTSAC	3 cut(s)	361, 802, 809
Tsp45I	GTSAC	3 cut(s)	361, 802, 809
TspDTI	ATGAA	5 cut(s)	570, 686, 921, 966, 1461
TspGWI	ACGGA	1 cut(s)	1366
TspRI	CASTG	3 cut(s)	871, 1006, 1505
Tth111I	GACNNNGTC	1 cut(s)	563
Vha464I	CTTAAG	2 cut(s)	1334, 1511
VpaK11BI	GGWCC	1 cut(s)	881
XagI	CCTNNNNNAGG	1 cut(s)	837
XapI	RAATTY	3 cut(s)	335, 343, 973
XbaI	TCTAGA	1 cut(s)	1273
XhoI	CTCGAG	2 cut(s)	229, 814
XmnI	GAANNNNTTC	2 cut(s)	628, 853
XspI	CTAG	8 cut(s)	354, 510, 705, 741, 807, 927, 1118, 1274
Zsp2I	ATGCAT	1 cut(s)	1375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.