Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002390

Physical Location & Seq

Genomic Coordinates Reverse (-)

63526989 .. 63529256

Gene Structure 2268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG461600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1680 bp

ATGGATGAGTATTCCGGTAAAAGAGCTAGTGCTGGACTTGTCTCTAGAAAGGGGCCTAGTCTTGTTTTGAGGGAAACTCCAAACAGAGATCGTAATGCTCAGGTCTGCAGCCGACAGGGATGCAGTGGAAGACTGAATTCTGTGAAAGGTGCTCAAATTGAAAAGGCCAAATCTTCAAAGCCTGCATTCTGCTCTTCTTCAAATGGGAAAGAGATAGTTGGAAGTTCCTCAAGGTCTTGCATTTCTGGCAACTCAAGAAAATCTGGTCCTTGCAAAAAGCTATCTTCTAATTTGGAAACAGATTCATCTGAAACCAGCAGTGTTCAGGATGATCCAGAAGTGTCAGAAGTCACTCCTCCACCTGGAAAGATTCAGAGAGGGCTTCACCCTGAATCTAAAAATGGGGAGTCTAGTGAAGTCTCCTTGATGGAAGTTGGAAGCTCCGATGTATCATCAAATACAAGATCCCGGAGGAATTTCAATCAGAGAACTGGATTGTGCAACCAAGAAACGTTATTGGGTTCTTCTGTTCCTTTCGGATCTAAAAACAACAACCAGACAACACGAGCTAGCACAACCAGGAATGGCTTAAGAAATCTAAGGTGCACTTCAGTATCTGATGTTGTTCCGTCCAGTTGTTCATCATCAGACTCGAGTGTCAACAGGAGGGAGACCCTAAAGAAAAGAATTTCTGAAGGAGAAAGTAGCTCAGCTGCTAAGGGGAAGAAGATGAATGGGTCATCTTCTGGGCAAAACTCCAATTCGAGCCATGGAATCTCAATTGCTGATTCAAGAAGAGGTAGAAATATACCTCCTAACAGGGATAATGGTGTTGCTTCGGTTAGGACTCGGAGAACTGTTACTGGTCACACAAGGGCTAGGATTTCTAATCAAGGAAGTGGAAACAATATGTCAAGCAATGGATCTTCTGCAGTTGGCCCTCATATGTCTCAACCTGAGATTATCGATATGAATGGTGCTAGTTCATCACAACACTTATCTTCTGAAGCTCCTTTAAATCGGCCAAATTCTTATAGTAGACCAGGTGGTAGCAGTAGACCAGGTAGTGGCAGTGGGAGTTTACATGGCATGATTCGATCTGGTACTGCAGATATTGGTTTTTCCCGGTCTTTAATGAATCAGGATGGTCAGCGACGCTACAACATGGATGGAATTGCAGAGGTATTGCTAGCACTGGAGAGGATTGAACAAGATGAAGAGCTATCATTTGAGCAAATACTTGTTCTTGAGACCAATTTGTTCCTGAATGGCCTAAACTTCTATGATCAGCATAGAGATATGAGACTGGATATCGATAACATGTCATATGAGGAATTGTTAGCATTAGAAGAGAGAATGGGTTCTGTAAGCACAGCATTGCCAGAAGAAGCACTGACAGATTGCATTAAGAAAAGCATCTATCAGTCTGAACCTCCAGAGGATGCATCCATAGGCTGTGATAATAAGGATGAAGTCAAATGCAGTATCTGCCAGGAGGAATATGTGGCTGGAGACGAAGTTGGGAGGTTGCGGTGTGAGCATAGTTATCATTTAGTCTGCGTAAATCAATGGCTGCGGGTTAAGAATTGGTGCCCTATATGCAAGGCGGCAGCGGCTACAGCTGCGGCTGAACCCTCATCACCATCACCATCACCACCCTCATCACCATATTTGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

559

Amino Acids

60.09

Weight (kDa)

8.41

Isoelectric Point (pI)

59.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	484 - 535	6.9e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	493 - 535	2.2e-11	Ring finger domain
zf-C3HC4_2	PF13923	493 - 534	1.8e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	494 - 521	9.6e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31450 AT4G31450 AT5G10650 AT5G10650 AT5G10650 AT5G24870 AT5G24870 AT5G24870
fragaria_vesca	FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760
malus_domestica	MD08G1128400.v1.1 MD15G1107900.v1.1
prunus_persica	Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1
pyrus_communis	pycom08g10730 pycom15g09860
rosa_chinensis	RchiOBHm_Chr6g0304981
rosa_laevigata	RLG00000010931
rosa_multiflora	Rmu_co8384967.1_g000001 Rmu_sc0026376.1_g000001 Rmu_sc0028342.1_g000002
rosa_roxburghii	Rroxscaffold_7G00163300
rosa_rugosa	Rorug06G0336500 Rorug06G0336600 Rorug06G0336600
rosa_samantha	Rh6AG447900 Rh6BG453000 Rh6CG461600 Rh6DG448600
rosa_wichuraiana	Rw6G039010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	656
AccB1I	GGYRCC	1 cut(s)	1590
AccB7I	CCANNNNNTGG	1 cut(s)	1067
AccI	GTMKAC	2 cut(s)	1039, 1057
AciI	CCGC	5 cut(s)	1531, 1576, 1607, 1613, 1625
AclI	AACGTT	1 cut(s)	512
AclWI	GGATC	4 cut(s)	326, 459, 547, 931
AcoI	YGGCCR	1 cut(s)	1022
AcsI	RAATTY	4 cut(s)	136, 475, 687, 1027
AcuI	CTGAAG	3 cut(s)	594, 714, 1026
AfaI	GTAC	1 cut(s)	1105
AfiI	CCNNNNNNNGG	2 cut(s)	362, 1067
AflII	CTTAAG	1 cut(s)	589
AflIII	ACRYGT	1 cut(s)	1320
AgsI	TTSAA	6 cut(s)	161, 177, 201, 481, 792, 1208
AjnI	CCWGG	5 cut(s)	361, 578, 1042, 1060, 1491
AluBI	AGCT	9 cut(s)	26, 280, 441, 569, 708, 713, 1010, 1222, 1622
AluI	AGCT	9 cut(s)	26, 280, 441, 569, 708, 713, 1010, 1222, 1622
Alw21I	GWGCWC	2 cut(s)	154, 608
Alw26I	GTCTC	7 cut(s)	46, 424, 665, 954, 1244, 1297, 1506
Alw44I	GTGCAC	1 cut(s)	604
AlwI	GGATC	4 cut(s)	326, 459, 547, 931
AlwNI	CAGNNNCTG	2 cut(s)	617, 1488
Ama87I	CYCGRG	1 cut(s)	652
AoxI	GGCC	5 cut(s)	53, 165, 937, 1022, 1270
ApaLI	GTGCAC	1 cut(s)	604
ApeKI	GCWGC	5 cut(s)	108, 713, 1573, 1610, 1622
ApoI	RAATTY	4 cut(s)	136, 475, 687, 1027
Asp700I	GAANNNNTTC	1 cut(s)	1360
AspS9I	GGNCC	3 cut(s)	53, 266, 938
AsuC2I	CCSGG	2 cut(s)	469, 1126
AsuHPI	GGTGA	5 cut(s)	377, 1632, 1638, 1644, 1656
AsuNHI	GCTAGC	2 cut(s)	569, 1189
AvaI	CYCGRG	1 cut(s)	652
AvaII	GGWCC	1 cut(s)	266
BaeGI	GKGCMC	2 cut(s)	608, 1595
BaeI	ACNNNNGTAYC	2 cut(s)	597, 630
BanI	GGYRCC	1 cut(s)	1590
BauI	CACGAG	1 cut(s)	564
BbsI	GAAGAC	1 cut(s)	136
Bbv12I	GWGCWC	2 cut(s)	154, 608
BbvI	GCAGC	5 cut(s)	120, 700, 1560, 1609, 1622
BccI	CCATC	5 cut(s)	421, 1139, 1163, 1651, 1657
BcgI	CGANNNNNNTGC	2 cut(s)	102, 136
BciT130I	CCWGG	5 cut(s)	363, 580, 1044, 1062, 1493
BclI	TGATCA	1 cut(s)	1285
BcnI	CCSGG	2 cut(s)	469, 1126
BcoDI	GTCTC	7 cut(s)	46, 424, 665, 954, 1244, 1297, 1506
BfaI	CTAG	8 cut(s)	27, 45, 57, 411, 570, 879, 981, 1190
BfmI	CTRYAG	4 cut(s)	106, 930, 1107, 1617
BfrI	CTTAAG	1 cut(s)	589
BisI	GCNGC	8 cut(s)	109, 714, 1574, 1608, 1611, 1614, 1623, 1626
BlpI	GCTNAGC	1 cut(s)	709
BlsI	GCNGC	8 cut(s)	110, 715, 1575, 1609, 1612, 1615, 1624, 1627
Bme1390I	CCNGG	7 cut(s)	363, 469, 580, 1044, 1062, 1126, 1493
Bme18I	GGWCC	1 cut(s)	266
BmeT110I	CYCGRG	1 cut(s)	652
BmgT120I	GGNCC	3 cut(s)	53, 266, 938
BmiI	GGNNCC	2 cut(s)	54, 1592
BmrFI	CCNGG	7 cut(s)	363, 469, 580, 1044, 1062, 1126, 1493
BmsI	GCATC	4 cut(s)	110, 1425, 1432, 1454
BmtI	GCTAGC	2 cut(s)	573, 1193
BpiI	GAAGAC	1 cut(s)	136
BplI	GAGNNNNNCTC	2 cut(s)	61, 93
BpmI	CTGGAG	3 cut(s)	1217, 1419, 1530
Bpu10I	CCTNAGC	2 cut(s)	99, 717
Bpu1102I	GCTNAGC	1 cut(s)	709
BpuEI	CTTGAG	3 cut(s)	214, 238, 1268
BpuMI	CCSGG	2 cut(s)	469, 1126
Bsa29I	ATCGAT	2 cut(s)	966, 1314
BsaI	GGTCTC	2 cut(s)	665, 1244
BsaJI	CCNNGG	1 cut(s)	769
BsaWI	WCCGGW	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	1503, 1533
Bsc4I	CCNNNNNNNGG	2 cut(s)	362, 1067
Bse1I	ACTGG	5 cut(s)	496, 633, 868, 1200, 1311
Bse3DI	GCAATG	2 cut(s)	925, 1376
BseBI	CCWGG	5 cut(s)	363, 580, 1044, 1062, 1493
BseCI	ATCGAT	2 cut(s)	966, 1314
BseDI	CCNNGG	1 cut(s)	769
BseGI	GGATG	8 cut(s)	10, 125, 334, 1150, 1174, 1445, 1447, 1474
BseLI	CCNNNNNNNGG	2 cut(s)	362, 1067
BseMI	GCAATG	2 cut(s)	925, 1376
BseMII	CTCAG	3 cut(s)	113, 723, 948
BseNI	ACTGG	5 cut(s)	496, 633, 868, 1200, 1311
BseRI	GAGGAG	1 cut(s)	345
BseSI	GKGCMC	2 cut(s)	608, 1595
BseXI	GCAGC	5 cut(s)	120, 700, 1560, 1609, 1622
BshFI	GGCC	5 cut(s)	55, 167, 939, 1024, 1272
BshNI	GGYRCC	1 cut(s)	1590
BshVI	ATCGAT	2 cut(s)	966, 1314
BsiHKAI	GWGCWC	2 cut(s)	154, 608
BsiHKCI	CYCGRG	1 cut(s)	652
BsiSI	CCGG	3 cut(s)	15, 469, 1126
BslI	CCNNNNNNNGG	2 cut(s)	362, 1067
BsmAI	GTCTC	7 cut(s)	46, 424, 665, 954, 1244, 1297, 1506
BsmBI	CGTCTC	1 cut(s)	1506
BsmI	GAATGC	1 cut(s)	185
BsnI	GGCC	5 cut(s)	55, 167, 939, 1024, 1272
Bso31I	GGTCTC	2 cut(s)	665, 1244
BsoBI	CYCGRG	1 cut(s)	652
Bsp1286I	GDGCHC	3 cut(s)	154, 608, 1595
Bsp143I	GATC	7 cut(s)	88, 331, 464, 539, 923, 1097, 1285
Bsp1720I	GCTNAGC	1 cut(s)	709
Bsp19I	CCATGG	1 cut(s)	769
BspACI	CCGC	5 cut(s)	1531, 1576, 1607, 1613, 1625
BspANI	GGCC	5 cut(s)	55, 167, 939, 1024, 1272
BspCNI	CTCAG	3 cut(s)	112, 722, 949
BspDI	ATCGAT	2 cut(s)	966, 1314
BspLI	GGNNCC	2 cut(s)	54, 1592
BspMAI	CTGCAG	3 cut(s)	110, 934, 1111
BspOI	GCTAGC	2 cut(s)	573, 1193
BspPI	GGATC	4 cut(s)	326, 459, 547, 931
BspQI	GCTCTTC	2 cut(s)	199, 1212
BspT107I	GGYRCC	1 cut(s)	1590
BspTI	CTTAAG	1 cut(s)	589
BspTNI	GGTCTC	2 cut(s)	665, 1244
BsrDI	GCAATG	2 cut(s)	925, 1376
BsrI	ACTGG	5 cut(s)	496, 633, 868, 1200, 1311
BssECI	CCNNGG	1 cut(s)	769
BssMI	GATC	7 cut(s)	88, 331, 464, 539, 923, 1097, 1285
BssSI	CACGAG	1 cut(s)	564
BssT1I	CCWWGG	1 cut(s)	769
Bst2BI	CACGAG	1 cut(s)	564
Bst2UI	CCWGG	5 cut(s)	363, 580, 1044, 1062, 1493
Bst4CI	ACNGT	1 cut(s)	859
Bst6I	CTCTTC	4 cut(s)	199, 790, 1212, 1344
BstAFI	CTTAAG	1 cut(s)	589
BstAPI	GCANNNNNTGC	1 cut(s)	1488
BstC8I	GCNNGC	3 cut(s)	183, 571, 1191
BstDEI	CTNAG	5 cut(s)	99, 599, 709, 717, 957
BstDSI	CCRYGG	1 cut(s)	769
BstF5I	GGATG	8 cut(s)	10, 125, 334, 1150, 1174, 1445, 1447, 1474
BstKTI	GATC	7 cut(s)	91, 334, 467, 542, 926, 1100, 1288
BstMAI	GTCTC	7 cut(s)	46, 424, 665, 954, 1244, 1297, 1506
BstMBI	GATC	7 cut(s)	88, 331, 464, 539, 923, 1097, 1285
BstMWI	GCNNNNNNNGC	7 cut(s)	246, 1488, 1537, 1599, 1613, 1619, 1622
BstNI	CCWGG	5 cut(s)	363, 580, 1044, 1062, 1493
BstNSI	RCATGY	1 cut(s)	1324
BstSCI	CCNGG	7 cut(s)	361, 467, 578, 1042, 1060, 1124, 1491
BstSFI	CTRYAG	4 cut(s)	106, 930, 1107, 1617
BstSLI	GKGCMC	2 cut(s)	608, 1595
BstV1I	GCAGC	5 cut(s)	120, 700, 1560, 1609, 1622
BstV2I	GAAGAC	1 cut(s)	136
BstX2I	RGATCY	3 cut(s)	464, 539, 923
BstYI	RGATCY	3 cut(s)	464, 539, 923
Bsu15I	ATCGAT	2 cut(s)	966, 1314
BsuRI	GGCC	5 cut(s)	55, 167, 939, 1024, 1272
BsuTUI	ATCGAT	2 cut(s)	966, 1314
BtgI	CCRYGG	1 cut(s)	769
BtsCI	GGATG	8 cut(s)	10, 125, 334, 1150, 1174, 1445, 1447, 1474
BtsI	GCAGTG	3 cut(s)	130, 325, 1078
BtsIMutI	CAGTG	5 cut(s)	130, 325, 1078, 1193, 1391
Cac8I	GCNNGC	3 cut(s)	183, 571, 1191
CaiI	CAGNNNCTG	2 cut(s)	617, 1488
Cfr13I	GGNCC	3 cut(s)	53, 266, 938
ClaI	ATCGAT	2 cut(s)	966, 1314
CseI	GACGC	1 cut(s)	1164
CsiI	ACCWGGT	2 cut(s)	1042, 1060
Csp6I	GTAC	1 cut(s)	1104
CviAII	CATG	5 cut(s)	770, 1085, 1090, 1165, 1321
CviQI	GTAC	1 cut(s)	1104
DdeI	CTNAG	5 cut(s)	99, 599, 709, 717, 957
DpnI	GATC	7 cut(s)	90, 333, 466, 541, 925, 1099, 1287
DpnII	GATC	7 cut(s)	88, 331, 464, 539, 923, 1097, 1285
DraI	TTTAAA	1 cut(s)	1017
DrdI	GACNNNNNNGTC	1 cut(s)	656
DseDI	GACNNNNNNGTC	1 cut(s)	656
EaeI	YGGCCR	1 cut(s)	1022
Eam1104I	CTCTTC	4 cut(s)	199, 790, 1212, 1344
EarI	CTCTTC	4 cut(s)	199, 790, 1212, 1344
Eco130I	CCWWGG	1 cut(s)	769
Eco31I	GGTCTC	2 cut(s)	665, 1244
Eco32I	GATATC	1 cut(s)	1312
Eco47I	GGWCC	1 cut(s)	266
Eco57I	CTGAAG	3 cut(s)	594, 714, 1026
Eco88I	CYCGRG	1 cut(s)	652
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	136
EcoRII	CCWGG	5 cut(s)	361, 578, 1042, 1060, 1491
EcoRV	GATATC	1 cut(s)	1312
EcoT14I	CCWWGG	1 cut(s)	769
EcoT22I	ATGCAT	1 cut(s)	1447
ErhI	CCWWGG	1 cut(s)	769
Esp3I	CGTCTC	1 cut(s)	1506
FaeI	CATG	5 cut(s)	773, 1088, 1093, 1168, 1324
FalI	AAGNNNNNCTT	2 cut(s)	592, 624
FatI	CATG	5 cut(s)	769, 1084, 1089, 1164, 1320
FauI	CCCGC	1 cut(s)	1569
FauNDI	CATATG	2 cut(s)	945, 1327
FbaI	TGATCA	1 cut(s)	1285
FblI	GTMKAC	2 cut(s)	1039, 1057
Fnu4HI	GCNGC	8 cut(s)	109, 714, 1574, 1608, 1611, 1614, 1623, 1626
FokI	GGATG	8 cut(s)	17, 132, 341, 1157, 1181, 1432, 1454, 1481
Fsp4HI	GCNGC	8 cut(s)	109, 714, 1574, 1608, 1611, 1614, 1623, 1626
FspBI	CTAG	8 cut(s)	27, 45, 57, 411, 570, 879, 981, 1190
GluI	GCNGC	8 cut(s)	109, 714, 1574, 1608, 1611, 1614, 1623, 1626
GsuI	CTGGAG	3 cut(s)	1217, 1419, 1530
HaeIII	GGCC	5 cut(s)	55, 167, 939, 1024, 1272
HapII	CCGG	3 cut(s)	15, 469, 1126
HgaI	GACGC	1 cut(s)	1164
Hin1II	CATG	5 cut(s)	773, 1088, 1093, 1168, 1324
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HpaII	CCGG	3 cut(s)	15, 469, 1126
HphI	GGTGA	5 cut(s)	377, 1632, 1638, 1644, 1656
Hpy166II	GTNNAC	5 cut(s)	606, 661, 1040, 1058, 1082
Hpy188III	TCNNGA	9 cut(s)	45, 255, 326, 335, 792, 1142, 1247, 1264, 1436
Hpy8I	GTNNAC	5 cut(s)	606, 661, 1040, 1058, 1082
Hpy99I	CGWCG	1 cut(s)	1158
HpyAV	CCTTC	1 cut(s)	689
HpyCH4III	ACNGT	1 cut(s)	859
HpyCH4IV	ACGT	1 cut(s)	512
HpyF10VI	GCNNNNNNNGC	7 cut(s)	246, 1488, 1537, 1599, 1613, 1619, 1622
HpyF3I	CTNAG	5 cut(s)	99, 599, 709, 717, 957
HpySE526I	ACGT	1 cut(s)	512
Hsp92II	CATG	5 cut(s)	773, 1088, 1093, 1168, 1324
Ksp22I	TGATCA	1 cut(s)	1285
Kzo9I	GATC	7 cut(s)	88, 331, 464, 539, 923, 1097, 1285
LguI	GCTCTTC	2 cut(s)	199, 1212
LmnI	GCTCC	2 cut(s)	446, 1015
Lsp1109I	GCAGC	5 cut(s)	120, 700, 1560, 1609, 1622
LweI	GCATC	4 cut(s)	110, 1425, 1432, 1454
MabI	ACCWGGT	2 cut(s)	1042, 1060
MaeI	CTAG	8 cut(s)	27, 45, 57, 411, 570, 879, 981, 1190
MaeII	ACGT	1 cut(s)	512
MaeIII	GTNAC	3 cut(s)	349, 859, 866
MalI	GATC	7 cut(s)	90, 333, 466, 541, 925, 1099, 1287
MboI	GATC	7 cut(s)	88, 331, 464, 539, 923, 1097, 1285
MfeI	CAATTG	1 cut(s)	780
MflI	RGATCY	3 cut(s)	464, 539, 923
MhlI	GDGCHC	3 cut(s)	154, 608, 1595
MlyI	GAGTC	3 cut(s)	416, 644, 841
MmeI	TCCRAC	2 cut(s)	199, 415
Mph1103I	ATGCAT	1 cut(s)	1447
MroXI	GAANNNNTTC	1 cut(s)	1360
MseI	TTAA	5 cut(s)	590, 1016, 1133, 1407, 1581
MspA1I	CMGCKG	3 cut(s)	713, 1613, 1622
MspCI	CTTAAG	1 cut(s)	589
MspI	CCGG	3 cut(s)	15, 469, 1126
MspR9I	CCNGG	7 cut(s)	363, 469, 580, 1044, 1062, 1126, 1493
MunI	CAATTG	1 cut(s)	780
Mva1269I	GAATGC	1 cut(s)	185
MvaI	CCWGG	5 cut(s)	363, 580, 1044, 1062, 1493
MwoI	GCNNNNNNNGC	7 cut(s)	246, 1488, 1537, 1599, 1613, 1619, 1622
NciI	CCSGG	2 cut(s)	469, 1126
NcoI	CCATGG	1 cut(s)	769
NdeI	CATATG	2 cut(s)	945, 1327
NdeII	GATC	7 cut(s)	88, 331, 464, 539, 923, 1097, 1285
NheI	GCTAGC	2 cut(s)	569, 1189
NlaIII	CATG	5 cut(s)	773, 1088, 1093, 1168, 1324
NlaIV	GGNNCC	2 cut(s)	54, 1592
NmuCI	GTSAC	2 cut(s)	349, 866
NsiI	ATGCAT	1 cut(s)	1447
NspI	RCATGY	1 cut(s)	1324
PaeR7I	CTCGAG	1 cut(s)	652
PciI	ACATGT	1 cut(s)	1320
PciSI	GCTCTTC	2 cut(s)	199, 1212
PctI	GAATGC	1 cut(s)	185
PdmI	GAANNNNTTC	1 cut(s)	1360
PfeI	GAWTC	7 cut(s)	302, 370, 392, 774, 788, 1093, 1138
PflMI	CCANNNNNTGG	1 cut(s)	1067
PfoI	TCCNGGA	1 cut(s)	467
PkrI	GCNGC	8 cut(s)	110, 715, 1575, 1609, 1612, 1615, 1624, 1627
PleI	GAGTC	3 cut(s)	415, 644, 841
PpsI	GAGTC	3 cut(s)	415, 644, 841
PscI	ACATGT	1 cut(s)	1320
Psp1406I	AACGTT	1 cut(s)	512
Psp6I	CCWGG	5 cut(s)	361, 578, 1042, 1060, 1491
PspGI	CCWGG	5 cut(s)	361, 578, 1042, 1060, 1491
PspN4I	GGNNCC	2 cut(s)	54, 1592
PspPI	GGNCC	3 cut(s)	53, 266, 938
PspXI	VCTCGAGB	1 cut(s)	652
PstI	CTGCAG	3 cut(s)	110, 934, 1111
PstNI	CAGNNNCTG	2 cut(s)	617, 1488
PsuI	RGATCY	3 cut(s)	464, 539, 923
PvuII	CAGCTG	2 cut(s)	713, 1622
RsaI	GTAC	1 cut(s)	1105
RsaNI	GTAC	1 cut(s)	1104
SapI	GCTCTTC	2 cut(s)	199, 1212
SaqAI	TTAA	5 cut(s)	590, 1016, 1133, 1407, 1581
SatI	GCNGC	8 cut(s)	109, 714, 1574, 1608, 1611, 1614, 1623, 1626
Sau3AI	GATC	7 cut(s)	88, 331, 464, 539, 923, 1097, 1285
Sau96I	GGNCC	3 cut(s)	53, 266, 938
SchI	GAGTC	3 cut(s)	416, 644, 841
ScrFI	CCNGG	7 cut(s)	363, 469, 580, 1044, 1062, 1126, 1493
SduI	GDGCHC	3 cut(s)	154, 608, 1595
SexAI	ACCWGGT	2 cut(s)	1042, 1060
SfaNI	GCATC	4 cut(s)	110, 1425, 1432, 1454
SfcI	CTRYAG	4 cut(s)	106, 930, 1107, 1617
Sfr274I	CTCGAG	1 cut(s)	652
SinI	GGWCC	1 cut(s)	266
SlaI	CTCGAG	1 cut(s)	652
SmlI	CTYRAG	5 cut(s)	229, 253, 589, 652, 1247
SmoI	CTYRAG	5 cut(s)	229, 253, 589, 652, 1247
SsiI	CCGC	5 cut(s)	1531, 1576, 1607, 1613, 1625
SspMI	CTAG	8 cut(s)	27, 45, 57, 411, 570, 879, 981, 1190
StyD4I	CCNGG	7 cut(s)	361, 467, 578, 1042, 1060, 1124, 1491
StyI	CCWWGG	1 cut(s)	769
TaaI	ACNGT	1 cut(s)	859
TaiI	ACGT	1 cut(s)	515
TaqI	TCGA	5 cut(s)	653, 764, 966, 1096, 1314
TauI	GCSGC	3 cut(s)	1610, 1616, 1628
TfiI	GAWTC	7 cut(s)	302, 370, 392, 774, 788, 1093, 1138
Tru1I	TTAA	5 cut(s)	590, 1016, 1133, 1407, 1581
Tru9I	TTAA	5 cut(s)	590, 1016, 1133, 1407, 1581
TscAI	CASTG	5 cut(s)	130, 325, 1078, 1200, 1398
TseFI	GTSAC	2 cut(s)	349, 866
TseI	GCWGC	5 cut(s)	108, 713, 1573, 1610, 1622
Tsp45I	GTSAC	2 cut(s)	349, 866
TspDTI	ATGAA	8 cut(s)	294, 630, 746, 975, 986, 1151, 1230, 1485
TspGWI	ACGGA	1 cut(s)	618
TspRI	CASTG	5 cut(s)	130, 325, 1078, 1200, 1398
Van91I	CCANNNNNTGG	1 cut(s)	1067
Vha464I	CTTAAG	1 cut(s)	589
VneI	GTGCAC	1 cut(s)	604
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	4 cut(s)	136, 475, 687, 1027
XbaI	TCTAGA	1 cut(s)	44
XceI	RCATGY	1 cut(s)	1324
XhoI	CTCGAG	1 cut(s)	652
XmiI	GTMKAC	2 cut(s)	1039, 1057
XmnI	GAANNNNTTC	1 cut(s)	1360
XspI	CTAG	8 cut(s)	27, 45, 57, 411, 570, 879, 981, 1190
Zsp2I	ATGCAT	1 cut(s)	1447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.