Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002390

Physical Location & Seq

Genomic Coordinates Reverse (-)

62153655 .. 62158605

Gene Structure 4951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG448600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1665 bp

ATGGATGAGTATTCCGGTAAAAGAGCTAGTGATGGACTTGTCTCTAGAAAGGGGCCTAGTCTTGTTTTGAGGGAAACTCCAAACAGAGATCGTAATGCTCAGGTCTGCAGCCGACTGGGATGCAGTGGAAGACTGAATTCTGTGAAAGGTGCTCAAATTGAAAAGGCCAAATCATCAAAGCCTGCATTCCGCTCTTCTTCAAATGGGAAAGAGATAGTTGGAAGTTCCTCTAGGTCTTGCATTTCTGTTGGCAACTCAAGAAAATTCGGTAGAGAACCTTGCAAAAAGCTATCTTCTAATTTGGAAACAGATTCATCTGAAACCAGCAGTGTTCAGGATGATCCAGAAGTGTCAGAAGTCACTCCTCCACCTGGAAAGATTCAGAGAGGGCTTCACCCTGAATCTAAAAATGGGGAGTCTAGTGAAGTCTCCTTGATGGAAGTTGGAAGCTCCGATGTATCATCAAATCCAAGATCCCGGAGGAATTTCAATCAGAGAACTGGATTGCGCAACCAAGAAACGTTATTGGGTTCTTCTGTTCCTTTCGGATCTAAAAACAACAACCAGACAACACGAGCTAGCACAACCAGGAATGGCTTAAGAAATCTAAGGTGCAATTCTGTATCTGATGTTGTTCCGTCCAGTTGTTCATCATCAGACTCGAGCGTCAACAGGAGGGAGACCCTAAAGAAAAGAATTTCTGAAGGAGAAAGTAGCTCAGCTGCTAAGGGGAAGAAGATGAATGGGTCATCTTCTGGGCAAAACTCCAGTTCGAGCCATGGAATCTCAATTGCTGATTCAAGAAGAGGTAGAAATATACCTCCTAACAGGGATAATGGTGTTGCGTCAGTTAGGACTCGGAGAACTGTTACTGGTCACTCAAGGGCTAGGATTTCTAATCAAGGAAGTGGAAACAATATGTCAAGCAATGGATCTTCTGCAGTTGGCCCTCATATGTCTCAACCTGAGATGTCTATCGATATGAATGGTGCTAGTTCATCACAACACTTATCTTCTGAAGCTCCTTTAAATCGGCCAAATTCTTATAGTAGACCAGGTAGTGGCAGTGGGAGTTTACATGGCATGATGCGATCTGGTACTGCAGATATTGGTTTTTCCCGGTCTCTAATGAATCAGGATGGTCAGCGACGCTACAACATGGATGGAATTGCAGAGGTATTGCTAGCACTGGAGAGGATTGAACAAGATGAAGAGCTATCATTTGAGCAAATACTTGTTCTTGAGACCAATTTGTTCCTGAATGGCCTAAACTTCTATGATCAGCATAGAGACATGAGACTGGATATCGATAACATGTCATATGAGGAATTGTTAGCATTAGAAGAGAGAATGGGTTCTGTAAGCACAGCATTGCCAGAAGAAGCATTGACAGATTGCATTAAGAAAAGCATCTGTCAGTCTGAACCTCCAGAGGATGCATCCATAGGCTGTGATAATAAGGATGAAGTCAAATGCAGTATCTGCCAGGAGGAATATGTGGCTGGAGACGAAGTTGGGAGGTTGCGGTGTGAGCATAGTTATCATTTAGTCTGCGTAAATCAATGGCTGCGGGTTAAGAATTGGTGCCCTATATGCAAGGCGGCAGCGGCAACAGCTGCGGCTGAACCCTCATCACCATCACCCTCATCACCATATTCCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

554

Amino Acids

59.85

Weight (kDa)

8.44

Isoelectric Point (pI)

58.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	482 - 533	6.3e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	491 - 533	2.2e-11	Ring finger domain
zf-C3HC4_2	PF13923	491 - 532	1.8e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	492 - 519	9.5e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31450 AT4G31450 AT5G10650 AT5G10650 AT5G10650 AT5G24870 AT5G24870 AT5G24870
fragaria_vesca	FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760
malus_domestica	MD08G1128400.v1.1 MD15G1107900.v1.1
prunus_persica	Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1
pyrus_communis	pycom08g10730 pycom15g09860
rosa_chinensis	RchiOBHm_Chr6g0304981
rosa_laevigata	RLG00000010931
rosa_multiflora	Rmu_co8384967.1_g000001 Rmu_sc0026376.1_g000001 Rmu_sc0028342.1_g000002
rosa_roxburghii	Rroxscaffold_7G00163300
rosa_rugosa	Rorug06G0336500 Rorug06G0336600 Rorug06G0336600
rosa_samantha	Rh6AG447900 Rh6BG453000 Rh6CG461600 Rh6DG448600
rosa_wichuraiana	Rw6G039010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	665
Acc16I	TGCGCA	1 cut(s)	509
AccB1I	GGYRCC	1 cut(s)	1584
AccB7I	CCANNNNNTGG	1 cut(s)	1061
AccBSI	CCGCTC	1 cut(s)	192
AccI	GTMKAC	1 cut(s)	1051
AciI	CCGC	6 cut(s)	190, 1525, 1570, 1601, 1607, 1619
AclI	AACGTT	1 cut(s)	521
AclWI	GGATC	4 cut(s)	335, 468, 556, 940
AcoI	YGGCCR	1 cut(s)	1034
AcsI	RAATTY	5 cut(s)	136, 263, 484, 696, 1039
AcuI	CTGAAG	2 cut(s)	723, 1038
AfaI	GTAC	1 cut(s)	1099
AfiI	CCNNNNNNNGG	2 cut(s)	371, 1061
AflII	CTTAAG	1 cut(s)	598
AflIII	ACRYGT	1 cut(s)	1314
AgsI	TTSAA	5 cut(s)	161, 201, 490, 801, 1202
AjnI	CCWGG	4 cut(s)	370, 587, 1054, 1485
AluBI	AGCT	9 cut(s)	26, 289, 450, 578, 717, 722, 1022, 1216, 1616
AluI	AGCT	9 cut(s)	26, 289, 450, 578, 717, 722, 1022, 1216, 1616
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	9 cut(s)	46, 433, 674, 963, 1128, 1238, 1284, 1291, 1500
AlwI	GGATC	4 cut(s)	335, 468, 556, 940
AlwNI	CAGNNNCTG	1 cut(s)	1482
Ama87I	CYCGRG	1 cut(s)	661
AoxI	GGCC	5 cut(s)	53, 165, 946, 1034, 1264
ApeKI	GCWGC	5 cut(s)	108, 722, 1567, 1604, 1616
ApoI	RAATTY	5 cut(s)	136, 263, 484, 696, 1039
Asp700I	GAANNNNTTC	1 cut(s)	1354
AspLEI	GCGC	1 cut(s)	510
AspS9I	GGNCC	2 cut(s)	53, 947
AsuC2I	CCSGG	2 cut(s)	478, 1120
AsuHPI	GGTGA	4 cut(s)	386, 1626, 1632, 1641
AsuNHI	GCTAGC	2 cut(s)	578, 1183
AvaI	CYCGRG	1 cut(s)	661
BaeGI	GKGCMC	1 cut(s)	1589
BanI	GGYRCC	1 cut(s)	1584
BauI	CACGAG	1 cut(s)	573
BbsI	GAAGAC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	5 cut(s)	120, 709, 1554, 1603, 1616
BccI	CCATC	5 cut(s)	26, 430, 1133, 1157, 1645
BcgI	CGANNNNNNTGC	2 cut(s)	102, 136
BciT130I	CCWGG	4 cut(s)	372, 589, 1056, 1487
BclI	TGATCA	1 cut(s)	1279
BcnI	CCSGG	2 cut(s)	478, 1120
BcoDI	GTCTC	9 cut(s)	46, 433, 674, 963, 1128, 1238, 1284, 1291, 1500
BfaI	CTAG	9 cut(s)	27, 45, 57, 231, 420, 579, 888, 993, 1184
BfmI	CTRYAG	3 cut(s)	106, 939, 1101
BfrI	CTTAAG	1 cut(s)	598
BisI	GCNGC	8 cut(s)	109, 723, 1568, 1602, 1605, 1608, 1617, 1620
BlpI	GCTNAGC	1 cut(s)	718
BlsI	GCNGC	8 cut(s)	110, 724, 1569, 1603, 1606, 1609, 1618, 1621
Bme1390I	CCNGG	6 cut(s)	372, 478, 589, 1056, 1120, 1487
BmeT110I	CYCGRG	1 cut(s)	661
BmgT120I	GGNCC	2 cut(s)	53, 947
BmiI	GGNNCC	2 cut(s)	54, 1586
BmrFI	CCNGG	6 cut(s)	372, 478, 589, 1056, 1120, 1487
BmrI	ACTGGG	1 cut(s)	125
BmsI	GCATC	5 cut(s)	110, 1077, 1419, 1426, 1448
BmtI	GCTAGC	2 cut(s)	582, 1187
BmuI	ACTGGG	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	136
BplI	GAGNNNNNCTC	2 cut(s)	61, 93
BpmI	CTGGAG	4 cut(s)	751, 1211, 1413, 1524
Bpu10I	CCTNAGC	2 cut(s)	99, 726
Bpu1102I	GCTNAGC	1 cut(s)	718
BpuEI	CTTGAG	3 cut(s)	241, 865, 1262
BpuMI	CCSGG	2 cut(s)	478, 1120
Bsa29I	ATCGAT	2 cut(s)	978, 1308
BsaBI	GATNNNNATC	1 cut(s)	974
BsaI	GGTCTC	3 cut(s)	674, 1128, 1238
BsaJI	CCNNGG	1 cut(s)	778
BsaWI	WCCGGW	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	1497, 1527
Bsc4I	CCNNNNNNNGG	2 cut(s)	371, 1061
Bse1I	ACTGG	7 cut(s)	120, 505, 642, 768, 877, 1194, 1305
Bse3DI	GCAATG	2 cut(s)	934, 1370
Bse8I	GATNNNNATC	1 cut(s)	974
BseBI	CCWGG	4 cut(s)	372, 589, 1056, 1487
BseCI	ATCGAT	2 cut(s)	978, 1308
BseDI	CCNNGG	1 cut(s)	778
BseGI	GGATG	8 cut(s)	10, 125, 343, 1144, 1168, 1439, 1441, 1468
BseJI	GATNNNNATC	1 cut(s)	974
BseLI	CCNNNNNNNGG	2 cut(s)	371, 1061
BseMI	GCAATG	2 cut(s)	934, 1370
BseMII	CTCAG	3 cut(s)	113, 732, 957
BseNI	ACTGG	7 cut(s)	120, 505, 642, 768, 877, 1194, 1305
BseRI	GAGGAG	1 cut(s)	354
BseSI	GKGCMC	1 cut(s)	1589
BseXI	GCAGC	5 cut(s)	120, 709, 1554, 1603, 1616
BshFI	GGCC	5 cut(s)	55, 167, 948, 1036, 1266
BshNI	GGYRCC	1 cut(s)	1584
BshVI	ATCGAT	2 cut(s)	978, 1308
BsiHKAI	GWGCWC	1 cut(s)	154
BsiHKCI	CYCGRG	1 cut(s)	661
BsiSI	CCGG	3 cut(s)	15, 478, 1120
BslI	CCNNNNNNNGG	2 cut(s)	371, 1061
BsmAI	GTCTC	9 cut(s)	46, 433, 674, 963, 1128, 1238, 1284, 1291, 1500
BsmBI	CGTCTC	1 cut(s)	1500
BsmI	GAATGC	1 cut(s)	185
BsnI	GGCC	5 cut(s)	55, 167, 948, 1036, 1266
Bso31I	GGTCTC	3 cut(s)	674, 1128, 1238
BsoBI	CYCGRG	1 cut(s)	661
Bsp1286I	GDGCHC	2 cut(s)	154, 1589
Bsp143I	GATC	7 cut(s)	88, 340, 473, 548, 932, 1091, 1279
Bsp1720I	GCTNAGC	1 cut(s)	718
Bsp19I	CCATGG	1 cut(s)	778
BspACI	CCGC	6 cut(s)	190, 1525, 1570, 1601, 1607, 1619
BspANI	GGCC	5 cut(s)	55, 167, 948, 1036, 1266
BspCNI	CTCAG	3 cut(s)	112, 731, 958
BspDI	ATCGAT	2 cut(s)	978, 1308
BspLI	GGNNCC	2 cut(s)	54, 1586
BspMAI	CTGCAG	3 cut(s)	110, 943, 1105
BspOI	GCTAGC	2 cut(s)	582, 1187
BspPI	GGATC	4 cut(s)	335, 468, 556, 940
BspQI	GCTCTTC	2 cut(s)	199, 1206
BspT107I	GGYRCC	1 cut(s)	1584
BspTI	CTTAAG	1 cut(s)	598
BspTNI	GGTCTC	3 cut(s)	674, 1128, 1238
BsrBI	CCGCTC	1 cut(s)	192
BsrDI	GCAATG	2 cut(s)	934, 1370
BsrI	ACTGG	7 cut(s)	120, 505, 642, 768, 877, 1194, 1305
BssECI	CCNNGG	1 cut(s)	778
BssMI	GATC	7 cut(s)	88, 340, 473, 548, 932, 1091, 1279
BssSI	CACGAG	1 cut(s)	573
BssT1I	CCWWGG	1 cut(s)	778
Bst2BI	CACGAG	1 cut(s)	573
Bst2UI	CCWGG	4 cut(s)	372, 589, 1056, 1487
Bst4CI	ACNGT	1 cut(s)	868
Bst6I	CTCTTC	4 cut(s)	199, 799, 1206, 1338
BstAFI	CTTAAG	1 cut(s)	598
BstAPI	GCANNNNNTGC	2 cut(s)	1482, 1616
BstC8I	GCNNGC	3 cut(s)	183, 580, 1185
BstDEI	CTNAG	5 cut(s)	99, 608, 718, 726, 966
BstDSI	CCRYGG	1 cut(s)	778
BstF5I	GGATG	8 cut(s)	10, 125, 343, 1144, 1168, 1439, 1441, 1468
BstHHI	GCGC	1 cut(s)	510
BstKTI	GATC	7 cut(s)	91, 343, 476, 551, 935, 1094, 1282
BstMAI	GTCTC	9 cut(s)	46, 433, 674, 963, 1128, 1238, 1284, 1291, 1500
BstMBI	GATC	7 cut(s)	88, 340, 473, 548, 932, 1091, 1279
BstMWI	GCNNNNNNNGC	6 cut(s)	1482, 1531, 1593, 1607, 1613, 1616
BstNI	CCWGG	4 cut(s)	372, 589, 1056, 1487
BstNSI	RCATGY	1 cut(s)	1318
BstSCI	CCNGG	6 cut(s)	370, 476, 587, 1054, 1118, 1485
BstSFI	CTRYAG	3 cut(s)	106, 939, 1101
BstSLI	GKGCMC	1 cut(s)	1589
BstV1I	GCAGC	5 cut(s)	120, 709, 1554, 1603, 1616
BstV2I	GAAGAC	1 cut(s)	136
BstX2I	RGATCY	3 cut(s)	473, 548, 932
BstYI	RGATCY	3 cut(s)	473, 548, 932
Bsu15I	ATCGAT	2 cut(s)	978, 1308
BsuRI	GGCC	5 cut(s)	55, 167, 948, 1036, 1266
BsuTUI	ATCGAT	2 cut(s)	978, 1308
BtgI	CCRYGG	1 cut(s)	778
BtsCI	GGATG	8 cut(s)	10, 125, 343, 1144, 1168, 1439, 1441, 1468
BtsI	GCAGTG	3 cut(s)	130, 334, 1072
BtsIMutI	CAGTG	4 cut(s)	130, 334, 1072, 1187
Cac8I	GCNNGC	3 cut(s)	183, 580, 1185
CaiI	CAGNNNCTG	1 cut(s)	1482
CfoI	GCGC	1 cut(s)	510
Cfr13I	GGNCC	2 cut(s)	53, 947
ClaI	ATCGAT	2 cut(s)	978, 1308
CseI	GACGC	3 cut(s)	655, 834, 1158
CsiI	ACCWGGT	1 cut(s)	1054
Csp6I	GTAC	1 cut(s)	1098
CviAII	CATG	6 cut(s)	779, 1079, 1084, 1159, 1294, 1315
CviQI	GTAC	1 cut(s)	1098
DdeI	CTNAG	5 cut(s)	99, 608, 718, 726, 966
DpnI	GATC	7 cut(s)	90, 342, 475, 550, 934, 1093, 1281
DpnII	GATC	7 cut(s)	88, 340, 473, 548, 932, 1091, 1279
DraI	TTTAAA	1 cut(s)	1029
DrdI	GACNNNNNNGTC	1 cut(s)	665
DseDI	GACNNNNNNGTC	1 cut(s)	665
EaeI	YGGCCR	1 cut(s)	1034
Eam1104I	CTCTTC	4 cut(s)	199, 799, 1206, 1338
EarI	CTCTTC	4 cut(s)	199, 799, 1206, 1338
Eco130I	CCWWGG	1 cut(s)	778
Eco31I	GGTCTC	3 cut(s)	674, 1128, 1238
Eco32I	GATATC	1 cut(s)	1306
Eco57I	CTGAAG	2 cut(s)	723, 1038
Eco88I	CYCGRG	1 cut(s)	661
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	136
EcoRII	CCWGG	4 cut(s)	370, 587, 1054, 1485
EcoRV	GATATC	1 cut(s)	1306
EcoT14I	CCWWGG	1 cut(s)	778
EcoT22I	ATGCAT	1 cut(s)	1441
ErhI	CCWWGG	1 cut(s)	778
Esp3I	CGTCTC	1 cut(s)	1500
FaeI	CATG	6 cut(s)	782, 1082, 1087, 1162, 1297, 1318
FatI	CATG	6 cut(s)	778, 1078, 1083, 1158, 1293, 1314
FauI	CCCGC	1 cut(s)	1563
FauNDI	CATATG	2 cut(s)	954, 1321
FbaI	TGATCA	1 cut(s)	1279
FblI	GTMKAC	1 cut(s)	1051
Fnu4HI	GCNGC	8 cut(s)	109, 723, 1568, 1602, 1605, 1608, 1617, 1620
FokI	GGATG	8 cut(s)	17, 132, 350, 1151, 1175, 1426, 1448, 1475
Fsp4HI	GCNGC	8 cut(s)	109, 723, 1568, 1602, 1605, 1608, 1617, 1620
FspBI	CTAG	9 cut(s)	27, 45, 57, 231, 420, 579, 888, 993, 1184
FspI	TGCGCA	1 cut(s)	509
GlaI	GCGC	1 cut(s)	509
GluI	GCNGC	8 cut(s)	109, 723, 1568, 1602, 1605, 1608, 1617, 1620
GsuI	CTGGAG	4 cut(s)	751, 1211, 1413, 1524
HaeIII	GGCC	5 cut(s)	55, 167, 948, 1036, 1266
HapII	CCGG	3 cut(s)	15, 478, 1120
HgaI	GACGC	3 cut(s)	655, 834, 1158
HhaI	GCGC	1 cut(s)	510
Hin1II	CATG	6 cut(s)	782, 1082, 1087, 1162, 1297, 1318
Hin6I	GCGC	1 cut(s)	508
HinP1I	GCGC	1 cut(s)	508
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HinfI	GANTC	9 cut(s)	311, 379, 401, 416, 659, 783, 797, 856, 1132
HpaII	CCGG	3 cut(s)	15, 478, 1120
HphI	GGTGA	4 cut(s)	386, 1626, 1632, 1641
Hpy166II	GTNNAC	3 cut(s)	670, 1052, 1076
Hpy188III	TCNNGA	9 cut(s)	45, 258, 335, 344, 801, 1136, 1241, 1258, 1430
Hpy8I	GTNNAC	3 cut(s)	670, 1052, 1076
Hpy99I	CGWCG	1 cut(s)	1152
HpyAV	CCTTC	1 cut(s)	698
HpyCH4III	ACNGT	1 cut(s)	868
HpyCH4IV	ACGT	1 cut(s)	521
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1482, 1531, 1593, 1607, 1613, 1616
HpyF3I	CTNAG	5 cut(s)	99, 608, 718, 726, 966
HpySE526I	ACGT	1 cut(s)	521
Hsp92II	CATG	6 cut(s)	782, 1082, 1087, 1162, 1297, 1318
HspAI	GCGC	1 cut(s)	508
Ksp22I	TGATCA	1 cut(s)	1279
Kzo9I	GATC	7 cut(s)	88, 340, 473, 548, 932, 1091, 1279
LguI	GCTCTTC	2 cut(s)	199, 1206
LmnI	GCTCC	2 cut(s)	455, 1027
Lsp1109I	GCAGC	5 cut(s)	120, 709, 1554, 1603, 1616
LweI	GCATC	5 cut(s)	110, 1077, 1419, 1426, 1448
MabI	ACCWGGT	1 cut(s)	1054
MaeI	CTAG	9 cut(s)	27, 45, 57, 231, 420, 579, 888, 993, 1184
MaeII	ACGT	1 cut(s)	521
MaeIII	GTNAC	3 cut(s)	358, 868, 875
MalI	GATC	7 cut(s)	90, 342, 475, 550, 934, 1093, 1281
MbiI	CCGCTC	1 cut(s)	192
MboI	GATC	7 cut(s)	88, 340, 473, 548, 932, 1091, 1279
MfeI	CAATTG	1 cut(s)	789
MflI	RGATCY	3 cut(s)	473, 548, 932
MhlI	GDGCHC	2 cut(s)	154, 1589
MlyI	GAGTC	3 cut(s)	425, 653, 850
MmeI	TCCRAC	2 cut(s)	199, 424
Mph1103I	ATGCAT	1 cut(s)	1441
MroXI	GAANNNNTTC	1 cut(s)	1354
MseI	TTAA	4 cut(s)	599, 1028, 1401, 1575
MspA1I	CMGCKG	3 cut(s)	722, 1607, 1616
MspCI	CTTAAG	1 cut(s)	598
MspI	CCGG	3 cut(s)	15, 478, 1120
MspR9I	CCNGG	6 cut(s)	372, 478, 589, 1056, 1120, 1487
MunI	CAATTG	1 cut(s)	789
Mva1269I	GAATGC	1 cut(s)	185
MvaI	CCWGG	4 cut(s)	372, 589, 1056, 1487
MwoI	GCNNNNNNNGC	6 cut(s)	1482, 1531, 1593, 1607, 1613, 1616
NciI	CCSGG	2 cut(s)	478, 1120
NcoI	CCATGG	1 cut(s)	778
NdeI	CATATG	2 cut(s)	954, 1321
NdeII	GATC	7 cut(s)	88, 340, 473, 548, 932, 1091, 1279
NheI	GCTAGC	2 cut(s)	578, 1183
NlaIII	CATG	6 cut(s)	782, 1082, 1087, 1162, 1297, 1318
NlaIV	GGNNCC	2 cut(s)	54, 1586
NmuCI	GTSAC	2 cut(s)	358, 875
NsbI	TGCGCA	1 cut(s)	509
NsiI	ATGCAT	1 cut(s)	1441
NspI	RCATGY	1 cut(s)	1318
PaeR7I	CTCGAG	1 cut(s)	661
PciI	ACATGT	1 cut(s)	1314
PciSI	GCTCTTC	2 cut(s)	199, 1206
PctI	GAATGC	1 cut(s)	185
PdmI	GAANNNNTTC	1 cut(s)	1354
PfeI	GAWTC	6 cut(s)	311, 379, 401, 783, 797, 1132
PflMI	CCANNNNNTGG	1 cut(s)	1061
PfoI	TCCNGGA	1 cut(s)	476
PkrI	GCNGC	8 cut(s)	110, 724, 1569, 1603, 1606, 1609, 1618, 1621
PleI	GAGTC	3 cut(s)	424, 653, 850
PpsI	GAGTC	3 cut(s)	424, 653, 850
PscI	ACATGT	1 cut(s)	1314
Psp1406I	AACGTT	1 cut(s)	521
Psp6I	CCWGG	4 cut(s)	370, 587, 1054, 1485
PspGI	CCWGG	4 cut(s)	370, 587, 1054, 1485
PspN4I	GGNNCC	2 cut(s)	54, 1586
PspPI	GGNCC	2 cut(s)	53, 947
PspXI	VCTCGAGB	1 cut(s)	661
PstI	CTGCAG	3 cut(s)	110, 943, 1105
PstNI	CAGNNNCTG	1 cut(s)	1482
PsuI	RGATCY	3 cut(s)	473, 548, 932
PvuII	CAGCTG	2 cut(s)	722, 1616
RsaI	GTAC	1 cut(s)	1099
RsaNI	GTAC	1 cut(s)	1098
SapI	GCTCTTC	2 cut(s)	199, 1206
SaqAI	TTAA	4 cut(s)	599, 1028, 1401, 1575
SatI	GCNGC	8 cut(s)	109, 723, 1568, 1602, 1605, 1608, 1617, 1620
Sau3AI	GATC	7 cut(s)	88, 340, 473, 548, 932, 1091, 1279
Sau96I	GGNCC	2 cut(s)	53, 947
SchI	GAGTC	3 cut(s)	425, 653, 850
ScrFI	CCNGG	6 cut(s)	372, 478, 589, 1056, 1120, 1487
SduI	GDGCHC	2 cut(s)	154, 1589
SexAI	ACCWGGT	1 cut(s)	1054
SfaNI	GCATC	5 cut(s)	110, 1077, 1419, 1426, 1448
SfcI	CTRYAG	3 cut(s)	106, 939, 1101
Sfr274I	CTCGAG	1 cut(s)	661
SlaI	CTCGAG	1 cut(s)	661
SmlI	CTYRAG	5 cut(s)	256, 598, 661, 880, 1241
SmoI	CTYRAG	5 cut(s)	256, 598, 661, 880, 1241
SsiI	CCGC	6 cut(s)	190, 1525, 1570, 1601, 1607, 1619
SspMI	CTAG	9 cut(s)	27, 45, 57, 231, 420, 579, 888, 993, 1184
StyD4I	CCNGG	6 cut(s)	370, 476, 587, 1054, 1118, 1485
StyI	CCWWGG	1 cut(s)	778
TaaI	ACNGT	1 cut(s)	868
TaiI	ACGT	1 cut(s)	524
TaqI	TCGA	4 cut(s)	662, 773, 978, 1308
TauI	GCSGC	3 cut(s)	1604, 1610, 1622
TfiI	GAWTC	6 cut(s)	311, 379, 401, 783, 797, 1132
Tru1I	TTAA	4 cut(s)	599, 1028, 1401, 1575
Tru9I	TTAA	4 cut(s)	599, 1028, 1401, 1575
TscAI	CASTG	4 cut(s)	130, 334, 1072, 1194
TseFI	GTSAC	2 cut(s)	358, 875
TseI	GCWGC	5 cut(s)	108, 722, 1567, 1604, 1616
Tsp45I	GTSAC	2 cut(s)	358, 875
TspDTI	ATGAA	8 cut(s)	303, 639, 755, 987, 998, 1145, 1224, 1479
TspGWI	ACGGA	1 cut(s)	627
TspRI	CASTG	4 cut(s)	130, 334, 1072, 1194
Van91I	CCANNNNNTGG	1 cut(s)	1061
Vha464I	CTTAAG	1 cut(s)	598
XapI	RAATTY	5 cut(s)	136, 263, 484, 696, 1039
XbaI	TCTAGA	1 cut(s)	44
XceI	RCATGY	1 cut(s)	1318
XhoI	CTCGAG	1 cut(s)	661
XmiI	GTMKAC	1 cut(s)	1051
XmnI	GAANNNNTTC	1 cut(s)	1354
XspI	CTAG	9 cut(s)	27, 45, 57, 231, 420, 579, 888, 993, 1184
Zsp2I	ATGCAT	1 cut(s)	1441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.