Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002390

Physical Location & Seq

Genomic Coordinates Forward (+)

7532543 .. 7537097

Gene Structure 4555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1107900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1659 bp

ATGGATGAGTTTTCGGGTAAAAGAGCTGAGAATGGGCTCATCTCTAAAAAGGGATCTGGTCTTGGTTTGAGGGAAACCCCCAATAGACACCGCAATGCTCAGCTCTGTAGCCGACTGGGATGCAGTGGAAGATTGAACTCTGTGAAAAGTGCTCAAGTTGAAAAGGCCAAACCGTCAAGGCCAGCATTTCGCTCTTCGTCAAGCGGGAAAGAGATAATTGGAAGTTCCTCGAGGTCTTGCGTTGGTGTTGGCAACACAAGAAACTCCATTTCAGAACCTTATAAAAAGCTATCTTCTAATTTGGATACTGATTCATCTGAAACCAGTAGTGTTCAGGATGATCCAGAAGTTTCAGAAATCGCTCCGCCACCTGGAAAAATTCAAAGAGGGTTGCACCTTGAATCTAAAAATTCTGTGTCTAGTGAAATCACCTTGATGGAAGTTGGAAGCTCCCGTGTAGAATCAAATACAAGGTCTCGAAGGAGTTTTAATCAGAGATCTGGATTGCGCAGCCAAGATTCGATAGTGGGTTCTAATGTTTCTATGGGACCTAAAGGCACCATCCAGACACGGGCTAGCACAGCCAGGAATGGTTTAAGAAGTCTAAGATGCAGTTCAGTATCTGACGTTGTCCCGTCCAGTTGTGCATCATCAGATTCAAGCCTTGGTCAGAGAGAGACCATAAAGAAAAGAACTTCCGAAGGAGAAAGTAGTTCTGCTGCTAAGGGGAAGAAGATGAATGGGTCATCGTCAGCACAAAATTCCAATTCTAGCCATGGCATCTCAATTTCTGCTGATTCAAGAAGAGCTAGAAATATGCCTTCTAACAGGGATAACAATGGTGTTGCATCAGTTAGGACTCGGAGAACTGTCACTGGTCACTCGAGGGGAAGGCTGCTTCCTAATCAAGGAAGTGGAAACAACTCGTCATCCAATGGATTCTCTGCAGTTGGCCCACATACATCTCAACCTGAAATGTCTATCAACTCAAATGCTTCTAGTTCATCACAACAGTTATCTGCTGAAGTTCCTTTAATTCGGCAGAATTCTTATAGCCGGCCAGGTAGTAGCAGTGGTACTTTACATGGCATTCTGCGAGCTGGTGCTTCAGATGTCGGGTCTTCCCGCTCTCTAATGAATCAGGATGGACTGCGACGCTACAACATGGATGGGATAGCGGAGGTATTGCTAGCACTCGAGAGAATTGAGCACGATGAAGAGCTATCATTTGAGCAAATACTTGTTCTCGAGACCAATTTGTTCCTGAATGGCCTAAACATCTACGATCATCACAGAGACTTGAGACTGGATATTGACAACATGACATATGAGGAATTATTAGCTCTAGAAGAGAGGATGGGTACTGTCAGCACAGCATTGCCAGAAGAAGCATTGTCCGATTGCCTTAAGAAAAGTATCTATCAGTCTACACCCCAAGAAGATGCATCTGTAAGCTGCGATGGGAAGAAGGAGGATGTCAAATGCAGTATCTGCCAGGAAGAGTATGTGGCTGGAGATGAAGTTGGAAGATTGCGCTGCGAGCATAGCTTTCACATTGTCTGCGTAAACCAGTGGCTGCGGCTTAAGAATTGGTGCCCAATATGCAAGGCAGCGGCAGCACCAGCACCAGCACCCTCACCGTCGCCACCCTCCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

553

Amino Acids

59.31

Weight (kDa)

8.9

Isoelectric Point (pI)

61.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	494 - 536	1.6e-11	Ring finger domain
zf-C3HC4_2	PF13923	494 - 535	1.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	494 - 536	5.6e-06	RING-H2 zinc finger domain
zf-C3HC4	PF00097	495 - 535	4e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	495 - 522	8.4e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31450 AT4G31450 AT5G10650 AT5G10650 AT5G10650 AT5G24870 AT5G24870 AT5G24870
fragaria_vesca	FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760
malus_domestica	MD08G1128400.v1.1 MD15G1107900.v1.1
prunus_persica	Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1
pyrus_communis	pycom08g10730 pycom15g09860
rosa_chinensis	RchiOBHm_Chr6g0304981
rosa_laevigata	RLG00000010931
rosa_multiflora	Rmu_co8384967.1_g000001 Rmu_sc0026376.1_g000001 Rmu_sc0028342.1_g000002
rosa_roxburghii	Rroxscaffold_7G00163300
rosa_rugosa	Rorug06G0336500 Rorug06G0336600 Rorug06G0336600
rosa_samantha	Rh6AG447900 Rh6BG453000 Rh6CG461600 Rh6DG448600
rosa_wichuraiana	Rw6G039010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	282
AbsI	CCTCGAGG	1 cut(s)	229
Acc16I	TGCGCA	1 cut(s)	509
AccB1I	GGYRCC	2 cut(s)	557, 1593
AccBSI	CCGCTC	1 cut(s)	1128
AccI	GTMKAC	1 cut(s)	1427
AciI	CCGC	7 cut(s)	91, 204, 365, 1126, 1178, 1579, 1613
AclWI	GGATC	2 cut(s)	61, 335
AcoI	YGGCCR	1 cut(s)	1058
AcsI	RAATTY	4 cut(s)	378, 409, 760, 1045
AcuI	CTGAAG	2 cut(s)	1044, 1092
AfaI	GTAC	2 cut(s)	1078, 1363
AfiI	CCNNNNNNNGG	3 cut(s)	371, 571, 908
AflII	CTTAAG	2 cut(s)	1406, 1583
AgsI	TTSAA	6 cut(s)	136, 161, 383, 401, 660, 801
AjnI	CCWGG	4 cut(s)	370, 584, 1060, 1494
Alw21I	GWGCWC	2 cut(s)	154, 1212
Alw26I	GTCTC	5 cut(s)	480, 671, 1244, 1290, 1297
AlwI	GGATC	2 cut(s)	61, 335
AlwNI	CAGNNNCTG	3 cut(s)	623, 1491, 1576
Ama87I	CYCGRG	4 cut(s)	229, 883, 1196, 1247
AoxI	GGCC	5 cut(s)	165, 179, 952, 1058, 1270
ApeKI	GCWGC	8 cut(s)	510, 719, 895, 1455, 1536, 1576, 1610, 1616
ApoI	RAATTY	4 cut(s)	378, 409, 760, 1045
ArsI	GACNNNNNNTTYG	2 cut(s)	458, 490
AspLEI	GCGC	2 cut(s)	510, 1536
AspS9I	GGNCC	2 cut(s)	548, 953
AsuHPI	GGTGA	2 cut(s)	421, 1629
AsuNHI	GCTAGC	2 cut(s)	575, 1189
AvaI	CYCGRG	4 cut(s)	229, 883, 1196, 1247
AvaII	GGWCC	1 cut(s)	548
BaeGI	GKGCMC	1 cut(s)	1598
BanI	GGYRCC	2 cut(s)	557, 1593
BanII	GRGCYC	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	1113
Bbv12I	GWGCWC	2 cut(s)	154, 1212
BbvI	GCAGC	8 cut(s)	522, 706, 882, 1442, 1523, 1563, 1622, 1628
BccI	CCATC	6 cut(s)	430, 569, 1139, 1163, 1351, 1454
BcgI	CGANNNNNNTGC	2 cut(s)	102, 136
BciT130I	CCWGG	4 cut(s)	372, 586, 1062, 1496
BciVI	GTATCC	1 cut(s)	298
BcoDI	GTCTC	5 cut(s)	480, 671, 1244, 1290, 1297
BfaI	CTAG	7 cut(s)	420, 576, 771, 810, 999, 1190, 1346
BfmI	CTRYAG	2 cut(s)	106, 945
BfrI	CTTAAG	2 cut(s)	1406, 1583
BfuI	GTATCC	1 cut(s)	298
BglII	AGATCT	1 cut(s)	497
BlpI	GCTNAGC	1 cut(s)	99
Bme1390I	CCNGG	4 cut(s)	372, 586, 1062, 1496
Bme18I	GGWCC	1 cut(s)	548
BmeT110I	CYCGRG	4 cut(s)	229, 883, 1196, 1247
BmgT120I	GGNCC	2 cut(s)	548, 953
BmiI	GGNNCC	3 cut(s)	549, 559, 1595
BmrFI	CCNGG	4 cut(s)	372, 586, 1062, 1496
BmrI	ACTGGG	1 cut(s)	125
BmsI	GCATC	7 cut(s)	110, 599, 656, 789, 857, 1432, 1454
BmtI	GCTAGC	2 cut(s)	579, 1193
BmuI	ACTGGG	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	1113
BpmI	CTGGAG	1 cut(s)	1533
Bpu10I	CCTNAGC	1 cut(s)	723
Bpu1102I	GCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	2 cut(s)	138, 1321
BsaI	GGTCTC	3 cut(s)	480, 671, 1244
BsaJI	CCNNGG	2 cut(s)	664, 775
BsaXI	ACNNNNNCTCC	2 cut(s)	1506, 1536
Bsc4I	CCNNNNNNNGG	3 cut(s)	371, 571, 908
Bse118I	RCCGGY	1 cut(s)	1056
Bse1I	ACTGG	6 cut(s)	120, 324, 639, 880, 1311, 1570
Bse3DI	GCAATG	2 cut(s)	100, 1376
BseBI	CCWGG	4 cut(s)	372, 586, 1062, 1496
BseDI	CCNNGG	2 cut(s)	664, 775
BseGI	GGATG	9 cut(s)	10, 125, 343, 561, 929, 1150, 1174, 1362, 1480
BseLI	CCNNNNNNNGG	3 cut(s)	371, 571, 908
BseMI	GCAATG	2 cut(s)	100, 1376
BseMII	CTCAG	2 cut(s)	18, 113
BseNI	ACTGG	6 cut(s)	120, 324, 639, 880, 1311, 1570
BseSI	GKGCMC	1 cut(s)	1598
BseXI	GCAGC	8 cut(s)	522, 706, 882, 1442, 1523, 1563, 1622, 1628
BshFI	GGCC	5 cut(s)	167, 181, 954, 1060, 1272
BshNI	GGYRCC	2 cut(s)	557, 1593
BsiHKAI	GWGCWC	2 cut(s)	154, 1212
BsiHKCI	CYCGRG	4 cut(s)	229, 883, 1196, 1247
BsiSI	CCGG	1 cut(s)	1057
BslFI	GGGAC	2 cut(s)	561, 617
BslI	CCNNNNNNNGG	3 cut(s)	371, 571, 908
BsmAI	GTCTC	5 cut(s)	480, 671, 1244, 1290, 1297
BsmFI	GGGAC	2 cut(s)	561, 617
BsmI	GAATGC	1 cut(s)	1089
BsnI	GGCC	5 cut(s)	167, 181, 954, 1060, 1272
Bso31I	GGTCTC	3 cut(s)	480, 671, 1244
BsoBI	CYCGRG	4 cut(s)	229, 883, 1196, 1247
Bsp1286I	GDGCHC	4 cut(s)	39, 154, 1212, 1598
Bsp143I	GATC	4 cut(s)	53, 340, 497, 1285
Bsp1720I	GCTNAGC	1 cut(s)	99
Bsp19I	CCATGG	1 cut(s)	775
BspACI	CCGC	7 cut(s)	91, 204, 365, 1126, 1178, 1579, 1613
BspANI	GGCC	5 cut(s)	167, 181, 954, 1060, 1272
BspCNI	CTCAG	2 cut(s)	19, 112
BspLI	GGNNCC	3 cut(s)	549, 559, 1595
BspMAI	CTGCAG	1 cut(s)	949
BspOI	GCTAGC	2 cut(s)	579, 1193
BspPI	GGATC	2 cut(s)	61, 335
BspQI	GCTCTTC	3 cut(s)	199, 799, 1212
BspT107I	GGYRCC	2 cut(s)	557, 1593
BspTI	CTTAAG	2 cut(s)	1406, 1583
BspTNI	GGTCTC	3 cut(s)	480, 671, 1244
BsrBI	CCGCTC	1 cut(s)	1128
BsrDI	GCAATG	2 cut(s)	100, 1376
BsrFI	RCCGGY	1 cut(s)	1056
BsrI	ACTGG	6 cut(s)	120, 324, 639, 880, 1311, 1570
BssAI	RCCGGY	1 cut(s)	1056
BssECI	CCNNGG	2 cut(s)	664, 775
BssMI	GATC	4 cut(s)	53, 340, 497, 1285
BssT1I	CCWWGG	2 cut(s)	664, 775
Bst2UI	CCWGG	4 cut(s)	372, 586, 1062, 1496
Bst4CI	ACNGT	5 cut(s)	174, 871, 1014, 1366, 1641
Bst6I	CTCTTC	5 cut(s)	199, 799, 1212, 1344, 1494
BstAFI	CTTAAG	2 cut(s)	1406, 1583
BstAPI	GCANNNNNTGC	1 cut(s)	1491
BstC8I	GCNNGC	6 cut(s)	183, 577, 1058, 1098, 1191, 1541
BstDEI	CTNAG	4 cut(s)	27, 99, 605, 723
BstDSI	CCRYGG	1 cut(s)	775
BstENI	CCTNNNNNAGG	1 cut(s)	906
BstF5I	GGATG	9 cut(s)	10, 125, 343, 561, 929, 1150, 1174, 1362, 1480
BstHHI	GCGC	2 cut(s)	510, 1536
BstKTI	GATC	4 cut(s)	56, 343, 500, 1288
BstMAI	GTCTC	5 cut(s)	480, 671, 1244, 1290, 1297
BstMBI	GATC	4 cut(s)	53, 340, 497, 1285
BstMWI	GCNNNNNNNGC	7 cut(s)	581, 1491, 1540, 1545, 1602, 1616, 1622
BstNI	CCWGG	4 cut(s)	372, 586, 1062, 1496
BstSCI	CCNGG	4 cut(s)	370, 584, 1060, 1494
BstSFI	CTRYAG	2 cut(s)	106, 945
BstSLI	GKGCMC	1 cut(s)	1598
BstV1I	GCAGC	8 cut(s)	522, 706, 882, 1442, 1523, 1563, 1622, 1628
BstV2I	GAAGAC	1 cut(s)	1113
BstX2I	RGATCY	2 cut(s)	53, 497
BstYI	RGATCY	2 cut(s)	53, 497
BsuI	GTATCC	1 cut(s)	298
BsuRI	GGCC	5 cut(s)	167, 181, 954, 1060, 1272
BtgI	CCRYGG	1 cut(s)	775
BtgZI	GCGATG	1 cut(s)	1473
BtsCI	GGATG	9 cut(s)	10, 125, 343, 561, 929, 1150, 1174, 1362, 1480
BtsI	GCAGTG	2 cut(s)	130, 1078
BtsIMutI	CAGTG	4 cut(s)	130, 873, 1078, 1577
Cac8I	GCNNGC	6 cut(s)	183, 577, 1058, 1098, 1191, 1541
CaiI	CAGNNNCTG	3 cut(s)	623, 1491, 1576
CfoI	GCGC	2 cut(s)	510, 1536
Cfr10I	RCCGGY	1 cut(s)	1056
Cfr13I	GGNCC	2 cut(s)	548, 953
CseI	GACGC	1 cut(s)	1164
Csp6I	GTAC	2 cut(s)	1077, 1362
CviAII	CATG	4 cut(s)	776, 1085, 1165, 1321
CviQI	GTAC	2 cut(s)	1077, 1362
DdeI	CTNAG	4 cut(s)	27, 99, 605, 723
DpnI	GATC	4 cut(s)	55, 342, 499, 1287
DpnII	GATC	4 cut(s)	53, 340, 497, 1285
EaeI	YGGCCR	1 cut(s)	1058
Eam1104I	CTCTTC	5 cut(s)	199, 799, 1212, 1344, 1494
EarI	CTCTTC	5 cut(s)	199, 799, 1212, 1344, 1494
EciI	GGCGGA	1 cut(s)	354
Eco130I	CCWWGG	2 cut(s)	664, 775
Eco24I	GRGCYC	1 cut(s)	39
Eco31I	GGTCTC	3 cut(s)	480, 671, 1244
Eco47I	GGWCC	1 cut(s)	548
Eco57I	CTGAAG	2 cut(s)	1044, 1092
Eco88I	CYCGRG	4 cut(s)	229, 883, 1196, 1247
EcoNI	CCTNNNNNAGG	1 cut(s)	906
EcoO109I	RGGNCCY	1 cut(s)	548
EcoRI	GAATTC	1 cut(s)	1045
EcoRII	CCWGG	4 cut(s)	370, 584, 1060, 1494
EcoT14I	CCWWGG	2 cut(s)	664, 775
EcoT22I	ATGCAT	1 cut(s)	1447
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	2 cut(s)	664, 775
FaeI	CATG	4 cut(s)	779, 1088, 1168, 1324
FaqI	GGGAC	2 cut(s)	561, 617
FatI	CATG	4 cut(s)	775, 1084, 1164, 1320
FauI	CCCGC	2 cut(s)	197, 1133
FauNDI	CATATG	1 cut(s)	1327
FblI	GTMKAC	1 cut(s)	1427
FokI	GGATG	9 cut(s)	17, 132, 350, 548, 916, 1157, 1181, 1369, 1487
FriOI	GRGCYC	1 cut(s)	39
FspBI	CTAG	7 cut(s)	420, 576, 771, 810, 999, 1190, 1346
FspI	TGCGCA	1 cut(s)	509
GlaI	GCGC	2 cut(s)	509, 1535
GsuI	CTGGAG	1 cut(s)	1533
HaeIII	GGCC	5 cut(s)	167, 181, 954, 1060, 1272
HapII	CCGG	1 cut(s)	1057
HgaI	GACGC	1 cut(s)	1164
HhaI	GCGC	2 cut(s)	510, 1536
Hin1II	CATG	4 cut(s)	779, 1088, 1168, 1324
Hin6I	GCGC	2 cut(s)	508, 1534
HinP1I	GCGC	2 cut(s)	508, 1534
HinfI	GANTC	9 cut(s)	311, 401, 461, 518, 656, 797, 859, 939, 1138
HpaII	CCGG	1 cut(s)	1057
HphI	GGTGA	2 cut(s)	421, 1629
Hpy166II	GTNNAC	2 cut(s)	1428, 1567
Hpy8I	GTNNAC	2 cut(s)	1428, 1567
Hpy99I	CGWCG	2 cut(s)	1158, 1645
HpyAV	CCTTC	5 cut(s)	474, 695, 831, 885, 1462
HpyCH4III	ACNGT	5 cut(s)	174, 871, 1014, 1366, 1641
HpyCH4IV	ACGT	1 cut(s)	627
HpyCH4V	TGCA	9 cut(s)	123, 394, 612, 647, 848, 947, 1445, 1485, 1605
HpyF10VI	GCNNNNNNNGC	7 cut(s)	581, 1491, 1540, 1545, 1602, 1616, 1622
HpyF3I	CTNAG	4 cut(s)	27, 99, 605, 723
HpySE526I	ACGT	1 cut(s)	627
Hsp92II	CATG	4 cut(s)	779, 1088, 1168, 1324
HspAI	GCGC	2 cut(s)	508, 1534
KroI	GCCGGC	1 cut(s)	1056
KroNI	GCCGGC	1 cut(s)	1058
Kzo9I	GATC	4 cut(s)	53, 340, 497, 1285
LguI	GCTCTTC	3 cut(s)	199, 799, 1212
LmnI	GCTCC	2 cut(s)	367, 455
Lsp1109I	GCAGC	8 cut(s)	522, 706, 882, 1442, 1523, 1563, 1622, 1628
LweI	GCATC	7 cut(s)	110, 599, 656, 789, 857, 1432, 1454
MaeI	CTAG	7 cut(s)	420, 576, 771, 810, 999, 1190, 1346
MaeII	ACGT	1 cut(s)	627
MaeIII	GTNAC	2 cut(s)	871, 878
MalI	GATC	4 cut(s)	55, 342, 499, 1287
MbiI	CCGCTC	1 cut(s)	1128
MboI	GATC	4 cut(s)	53, 340, 497, 1285
MflI	RGATCY	2 cut(s)	53, 497
MhlI	GDGCHC	4 cut(s)	39, 154, 1212, 1598
MlyI	GAGTC	1 cut(s)	853
MmeI	TCCRAC	2 cut(s)	424, 1504
Mph1103I	ATGCAT	1 cut(s)	1447
MroNI	GCCGGC	1 cut(s)	1056
MseI	TTAA	5 cut(s)	489, 596, 1034, 1407, 1584
MslI	CAYNNNNRTG	2 cut(s)	93, 434
MspA1I	CMGCKG	1 cut(s)	1613
MspCI	CTTAAG	2 cut(s)	1406, 1583
MspI	CCGG	1 cut(s)	1057
MspR9I	CCNGG	4 cut(s)	372, 586, 1062, 1496
Mva1269I	GAATGC	1 cut(s)	1089
MvaI	CCWGG	4 cut(s)	372, 586, 1062, 1496
MwoI	GCNNNNNNNGC	7 cut(s)	581, 1491, 1540, 1545, 1602, 1616, 1622
NaeI	GCCGGC	1 cut(s)	1058
NcoI	CCATGG	1 cut(s)	775
NdeI	CATATG	1 cut(s)	1327
NdeII	GATC	4 cut(s)	53, 340, 497, 1285
NgoMIV	GCCGGC	1 cut(s)	1056
NheI	GCTAGC	2 cut(s)	575, 1189
NlaIII	CATG	4 cut(s)	779, 1088, 1168, 1324
NlaIV	GGNNCC	3 cut(s)	549, 559, 1595
NmuCI	GTSAC	2 cut(s)	871, 878
NsbI	TGCGCA	1 cut(s)	509
NsiI	ATGCAT	1 cut(s)	1447
PaeR7I	CTCGAG	4 cut(s)	229, 883, 1196, 1247
PciSI	GCTCTTC	3 cut(s)	199, 799, 1212
PctI	GAATGC	1 cut(s)	1089
PdiI	GCCGGC	1 cut(s)	1058
PfeI	GAWTC	8 cut(s)	311, 401, 461, 518, 656, 797, 939, 1138
PflFI	GACNNNGTC	1 cut(s)	629
PleI	GAGTC	1 cut(s)	853
PpsI	GAGTC	1 cut(s)	853
PpuMI	RGGWCCY	1 cut(s)	548
PsiI	TTATAA	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	548
Psp6I	CCWGG	4 cut(s)	370, 584, 1060, 1494
PspGI	CCWGG	4 cut(s)	370, 584, 1060, 1494
PspN4I	GGNNCC	3 cut(s)	549, 559, 1595
PspPI	GGNCC	2 cut(s)	548, 953
PspPPI	RGGWCCY	1 cut(s)	548
PspXI	VCTCGAGB	2 cut(s)	229, 883
PstI	CTGCAG	1 cut(s)	949
PstNI	CAGNNNCTG	3 cut(s)	623, 1491, 1576
PsuI	RGATCY	2 cut(s)	53, 497
PsyI	GACNNNGTC	1 cut(s)	629
RsaI	GTAC	2 cut(s)	1078, 1363
RsaNI	GTAC	2 cut(s)	1077, 1362
RseI	CAYNNNNRTG	2 cut(s)	93, 434
SapI	GCTCTTC	3 cut(s)	199, 799, 1212
SaqAI	TTAA	5 cut(s)	489, 596, 1034, 1407, 1584
Sau3AI	GATC	4 cut(s)	53, 340, 497, 1285
Sau96I	GGNCC	2 cut(s)	548, 953
SchI	GAGTC	1 cut(s)	853
ScrFI	CCNGG	4 cut(s)	372, 586, 1062, 1496
SduI	GDGCHC	4 cut(s)	39, 154, 1212, 1598
SfaNI	GCATC	7 cut(s)	110, 599, 656, 789, 857, 1432, 1454
SfcI	CTRYAG	2 cut(s)	106, 945
Sfr274I	CTCGAG	4 cut(s)	229, 883, 1196, 1247
SinI	GGWCC	1 cut(s)	548
SlaI	CTCGAG	4 cut(s)	229, 883, 1196, 1247
SmiMI	CAYNNNNRTG	2 cut(s)	93, 434
SmlI	CTYRAG	8 cut(s)	153, 229, 883, 1196, 1247, 1300, 1406, 1583
SmoI	CTYRAG	8 cut(s)	153, 229, 883, 1196, 1247, 1300, 1406, 1583
SsiI	CCGC	7 cut(s)	91, 204, 365, 1126, 1178, 1579, 1613
SspMI	CTAG	7 cut(s)	420, 576, 771, 810, 999, 1190, 1346
StyD4I	CCNGG	4 cut(s)	370, 584, 1060, 1494
StyI	CCWWGG	2 cut(s)	664, 775
TaaI	ACNGT	5 cut(s)	174, 871, 1014, 1366, 1641
TaiI	ACGT	1 cut(s)	630
TaqI	TCGA	6 cut(s)	230, 478, 521, 884, 1197, 1248
TauI	GCSGC	2 cut(s)	1582, 1616
TfiI	GAWTC	8 cut(s)	311, 401, 461, 518, 656, 797, 939, 1138
Tru1I	TTAA	5 cut(s)	489, 596, 1034, 1407, 1584
Tru9I	TTAA	5 cut(s)	489, 596, 1034, 1407, 1584
TscAI	CASTG	4 cut(s)	130, 880, 1078, 1577
TseFI	GTSAC	2 cut(s)	871, 878
TseI	GCWGC	8 cut(s)	510, 719, 895, 1455, 1536, 1576, 1610, 1616
Tsp45I	GTSAC	2 cut(s)	871, 878
TspDTI	ATGAA	6 cut(s)	303, 752, 993, 1151, 1230, 1533
TspRI	CASTG	4 cut(s)	130, 880, 1078, 1577
Tth111I	GACNNNGTC	1 cut(s)	629
Vha464I	CTTAAG	2 cut(s)	1406, 1583
VpaK11BI	GGWCC	1 cut(s)	548
XagI	CCTNNNNNAGG	1 cut(s)	906
XapI	RAATTY	4 cut(s)	378, 409, 760, 1045
XbaI	TCTAGA	1 cut(s)	1345
XhoI	CTCGAG	4 cut(s)	229, 883, 1196, 1247
XmiI	GTMKAC	1 cut(s)	1427
XspI	CTAG	7 cut(s)	420, 576, 771, 810, 999, 1190, 1346
Zsp2I	ATGCAT	1 cut(s)	1447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.