Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002390

Physical Location & Seq

Genomic Coordinates Reverse (-)

48844191 .. 48846465

Gene Structure 2275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0336500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1914 bp

ATGGCCTTGTCATCCCCGCTCTTCCTCTTACTACTCGCTTTACTATCGTTGTCAACTCCAGTTCTCTGCCAGCAAAACGTCACCGTTCCGTGCCCGCTCAACTTCACGATCCTGCAGCAGTTCGACCCGGGCTCCAAGCGCCCCCAAATGAACCAGAACATGGAGTGCCAGTACATCCTCCAAGGCCTCCGCCTCGTCGATTCCCACTACCTCCAGCTCACCGGCAACTTCCTCCCCCCGCCCAACGCCTCCGACTCCTGCTGGTCCGCCTACCAAACCCTCGCCGACAAATTCGTCGCCGACTTCGACATTCGCTCCACCTGCGGCTTCGAGACCTCCTGGATCTCCCAGGGCTGCATGAACATCACCACCAAGGCCCAATTCGAGGACCTCGTCGGCCAAACCGCCCTAGACGGCGTCGTTTCCAACTGCAACCAGTCGCTCGAGAACAACTCCCCCTGCGCCGCCTGCACCACCAGCCTCTCCAGCCTCTCCGCCACCTATTTGACCGGAGAATCCATCGGGAACGTCTCCGGCTGCACCGCCTACCCGTCGATTTACGCCGCCGCGTTCGCCAATCCCTACGGCCCGACCGATCACGGCAACGCCAAGTGCTTCTTTGCGCTCGATTTCACGACGCCCAGCTCCGGTAAGAAGAAAAGGACTCTGATTTTGATTGTGTTGGTTGCTTGTGGTTTCGGGTTGTTGGTTTTAATCGGTGGGATCTGGTTCTCATGGCACAAGTACGAAGAGTATATATTCAACAAGAGGCGAAAGGCTGCTAATGATAGAATTGAGTCGGGTTTGGGTAATGCATTAGAGTCCATTAGTGGGAGTACTACTTTGGTTAAGTTCACATTCGAAGAGATTAGCAAGGCTACTAAGAATTTCTCTAGAGATAATATAATCGGGAGGGGAGGATATGGGAATGTGTACAAGGGCACTCTGGCTGATGGCTCTGAAGTTGCATTGAAGAGGTTCAAGAATTGCTCTGCTGCCGGTGATGCGAATTTCGCTCACGAGGTTGAGGTGATTGCGAGCGTTAGGCATGTCAATCTTGTGGCTTTGAGAGGTTATTGTACTGCGACGACGCATTTGGTAGGTCACCAGAGGATCATTGTGTGTGATTTGATGAAGAATGGGAGTCTCCATGACCATTTGTTTGGGACTTTTGAGAACAAGCTCAGTTGGCCAGTTCGGCAAAGGATTGCGCTAGGGACTGCGAGGGGGTTGGCTTATTTGCATGACGGGGCTCAACCGTCCATCATTCATAGGGATATTAAAGCAAATAACATACTTTTGGATGAGGATTTTGAGGCCAAAGTGGCGGATTTTGGACTTGCAAAGTTTACGCCTGAGGGAATGACACATTTGAGCACTAGGGTGGCTGGAACGATGGGTTATCTTGCTCCAGAGTATGCATTGTATGGGCAGTTGACGGAGAAAAGTGATGTTTATAGCTTTGGTGTTGTGATGCTTGAGCTTTTGAGTGGAAAGAAAGCACTCCATGTGAACAATGATAGTCAGCCGTCACTTGTGACGGATTGGGCATGGTCCATGGTGCGAGAAGGAAAAGCGCTGGATGTCATTGAAGATATGCCAGAGAAGGGTCCACCTGAAGTTTTAGAGAAGTATGTATTGGTTGCTGTTCTTTGTTCTCATCCACAGTTGTATGCTAGGCCAACAATGGATCAGGTTGTAAAAATGTTGGAAACAGACTTGTCAGTTCCCTCAATCCCGGAAAGGCCAATTCCCCTTGTGGCCGAGATCGATGATATAGAAAGATACAGCAGCAGTGGCTCAATTCAGCTCTCTAGTACAGGAGGCTTCCAGACTTACACATTTGAAAGTAGCCTTCCTCGTGACCATAAGGGAGACGGAGAAAGTTCAGGTTCAACAACGGAAGGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

637

Amino Acids

69.55

Weight (kDa)

5.72

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	28 - 180	5e-37	SPARK
Pkinase	PF00069	298 - 568	8.8e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	300 - 570	3.6e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31450 AT4G31450 AT5G10650 AT5G10650 AT5G10650 AT5G24870 AT5G24870 AT5G24870
fragaria_vesca	FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760
malus_domestica	MD08G1128400.v1.1 MD15G1107900.v1.1
prunus_persica	Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1
pyrus_communis	pycom08g10730 pycom15g09860
rosa_chinensis	RchiOBHm_Chr6g0304981
rosa_laevigata	RLG00000010931
rosa_multiflora	Rmu_co8384967.1_g000001 Rmu_sc0026376.1_g000001 Rmu_sc0028342.1_g000002
rosa_roxburghii	Rroxscaffold_7G00163300
rosa_rugosa	Rorug06G0336500 Rorug06G0336600 Rorug06G0336600
rosa_samantha	Rh6AG447900 Rh6BG453000 Rh6CG461600 Rh6DG448600
rosa_wichuraiana	Rw6G039010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	329
AasI	GACNNNNNNGTC	1 cut(s)	293
Acc36I	ACCTGC	1 cut(s)	329
AccB7I	CCANNNNNTGG	1 cut(s)	160
AccBSI	CCGCTC	2 cut(s)	19, 97
AccII	CGCG	1 cut(s)	569
AclWI	GGATC	5 cut(s)	103, 350, 731, 1121, 1698
AcoI	YGGCCR	3 cut(s)	397, 1190, 1761
AcsI	RAATTY	3 cut(s)	290, 886, 1009
AcuI	CTGAAG	2 cut(s)	981, 1638
AcyI	GRCGYC	2 cut(s)	417, 638
AfaI	GTAC	6 cut(s)	173, 746, 838, 935, 1081, 1819
AfeI	AGCGCT	1 cut(s)	1578
AfiI	CCNNNNNNNGG	5 cut(s)	160, 385, 647, 831, 1607
AgsI	TTSAA	6 cut(s)	763, 973, 982, 1592, 1847, 1896
AjnI	CCWGG	2 cut(s)	338, 348
AjuI	GAANNNNNNNTTGG	4 cut(s)	365, 397, 1622, 1654
AleI	CACNNNNGTG	1 cut(s)	1382
AluBI	AGCT	6 cut(s)	217, 645, 1183, 1461, 1483, 1810
AluI	AGCT	6 cut(s)	217, 645, 1183, 1461, 1483, 1810
Alw21I	GWGCWC	1 cut(s)	1379
Alw26I	GTCTC	4 cut(s)	326, 535, 1151, 1869
AlwI	GGATC	5 cut(s)	103, 350, 731, 1121, 1698
Ama87I	CYCGRG	2 cut(s)	127, 443
Aor51HI	AGCGCT	1 cut(s)	1578
ApeKI	GCWGC	6 cut(s)	115, 354, 537, 779, 995, 1791
ApoI	RAATTY	3 cut(s)	290, 886, 1009
ArsI	GACNNNNNNTTYG	6 cut(s)	655, 687, 1078, 1110, 1145, 1177
Asp700I	GAANNNNTTC	1 cut(s)	977
AspLEI	GCGC	5 cut(s)	141, 464, 625, 1213, 1579
AspS9I	GGNCC	6 cut(s)	264, 376, 388, 587, 1554, 1610
AsuC2I	CCSGG	3 cut(s)	128, 129, 1739
AsuHPI	GGTGA	6 cut(s)	73, 211, 358, 1013, 1042, 1097
AsuII	TTCGAA	1 cut(s)	861
AvaI	CYCGRG	2 cut(s)	127, 443
AvaII	GGWCC	4 cut(s)	264, 388, 1554, 1610
AxyI	CCTNAGG	1 cut(s)	1356
BaeGI	GKGCMC	2 cut(s)	95, 944
BalI	TGGCCA	1 cut(s)	1192
BanII	GRGCYC	2 cut(s)	134, 1255
BauI	CACGAG	2 cut(s)	1019, 1860
Bbv12I	GWGCWC	1 cut(s)	1379
BbvI	GCAGC	6 cut(s)	127, 341, 524, 766, 982, 1803
BccI	CCATC	4 cut(s)	527, 947, 1271, 1390
BceAI	ACGGC	4 cut(s)	430, 601, 616, 1513
BciT130I	CCWGG	2 cut(s)	340, 350
BcnI	CCSGG	3 cut(s)	128, 129, 1739
BcoDI	GTCTC	4 cut(s)	326, 535, 1151, 1869
BfaI	CTAG	6 cut(s)	410, 894, 1214, 1380, 1677, 1815
BfmI	CTRYAG	1 cut(s)	113
BfoI	RGCGCY	2 cut(s)	142, 1580
BfuAI	ACCTGC	1 cut(s)	329
BglI	GCCNNNNNGGC	2 cut(s)	1198, 1325
BmcAI	AGTACT	1 cut(s)	838
Bme1390I	CCNGG	5 cut(s)	128, 129, 340, 350, 1739
Bme18I	GGWCC	4 cut(s)	264, 388, 1554, 1610
BmeT110I	CYCGRG	2 cut(s)	127, 443
BmgT120I	GGNCC	6 cut(s)	264, 376, 388, 587, 1554, 1610
BmiI	GGNNCC	2 cut(s)	133, 1611
BmrFI	CCNGG	5 cut(s)	128, 129, 340, 350, 1739
BmsI	GCATC	2 cut(s)	994, 1464
BplI	GAGNNNNNCTC	2 cut(s)	437, 469
BpmI	CTGGAG	4 cut(s)	42, 197, 469, 1395
Bpu14I	TTCGAA	1 cut(s)	861
BpuEI	CTTGAG	1 cut(s)	1499
BpuMI	CCSGG	3 cut(s)	128, 129, 1739
Bsa29I	ATCGAT	1 cut(s)	1770
BsaHI	GRCGYC	2 cut(s)	417, 638
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	6 cut(s)	127, 181, 348, 349, 372, 1557
BsaWI	WCCGGW	2 cut(s)	509, 647
BsaXI	ACNNNNNCTCC	6 cut(s)	116, 146, 155, 185, 299, 329
Bsc4I	CCNNNNNNNGG	5 cut(s)	160, 385, 647, 831, 1607
Bse118I	RCCGGY	2 cut(s)	221, 998
Bse1I	ACTGG	4 cut(s)	59, 169, 436, 1193
Bse21I	CCTNAGG	1 cut(s)	1356
BseBI	CCWGG	2 cut(s)	340, 350
BseCI	ATCGAT	1 cut(s)	1770
BseDI	CCNNGG	6 cut(s)	127, 181, 348, 349, 372, 1557
BseGI	GGATG	5 cut(s)	11, 174, 1309, 1588, 1660
BseLI	CCNNNNNNNGG	5 cut(s)	160, 385, 647, 831, 1607
BseMII	CTCAG	2 cut(s)	1198, 1347
BseNI	ACTGG	4 cut(s)	59, 169, 436, 1193
BseSI	GKGCMC	2 cut(s)	95, 944
BseXI	GCAGC	6 cut(s)	127, 341, 524, 766, 982, 1803
BseYI	CCCAGC	1 cut(s)	641
BsgI	GTGCAG	2 cut(s)	454, 523
Bsh1236I	CGCG	1 cut(s)	569
Bsh1285I	CGRYCG	1 cut(s)	594
BshVI	ATCGAT	1 cut(s)	1770
BsiEI	CGRYCG	1 cut(s)	594
BsiHKAI	GWGCWC	1 cut(s)	1379
BsiHKCI	CYCGRG	2 cut(s)	127, 443
BsiSI	CCGG	7 cut(s)	128, 222, 510, 534, 648, 999, 1739
BslFI	GGGAC	2 cut(s)	1180, 1231
BslI	CCNNNNNNNGG	5 cut(s)	160, 385, 647, 831, 1607
BsmAI	GTCTC	4 cut(s)	326, 535, 1151, 1869
BsmBI	CGTCTC	2 cut(s)	535, 1869
BsmFI	GGGAC	2 cut(s)	1180, 1231
Bso31I	GGTCTC	1 cut(s)	326
BsoBI	CYCGRG	2 cut(s)	127, 443
Bsp119I	TTCGAA	1 cut(s)	861
Bsp1286I	GDGCHC	5 cut(s)	95, 134, 944, 1255, 1379
Bsp1407I	TGTACA	1 cut(s)	933
Bsp143I	GATC	7 cut(s)	108, 342, 595, 723, 1113, 1690, 1767
Bsp19I	CCATGG	1 cut(s)	1557
BspCNI	CTCAG	2 cut(s)	1197, 1348
BspDI	ATCGAT	1 cut(s)	1770
BspFNI	CGCG	1 cut(s)	569
BspLI	GGNNCC	2 cut(s)	133, 1611
BspMAI	CTGCAG	1 cut(s)	117
BspMI	ACCTGC	1 cut(s)	329
BspPI	GGATC	5 cut(s)	103, 350, 731, 1121, 1698
BspQI	GCTCTTC	1 cut(s)	26
BspT104I	TTCGAA	1 cut(s)	861
BspTNI	GGTCTC	1 cut(s)	326
BsrBI	CCGCTC	2 cut(s)	19, 97
BsrFI	RCCGGY	2 cut(s)	221, 998
BsrGI	TGTACA	1 cut(s)	933
BsrI	ACTGG	4 cut(s)	59, 169, 436, 1193
BssAI	RCCGGY	2 cut(s)	221, 998
BssECI	CCNNGG	6 cut(s)	127, 181, 348, 349, 372, 1557
BssMI	GATC	7 cut(s)	108, 342, 595, 723, 1113, 1690, 1767
BssNI	GRCGYC	2 cut(s)	417, 638
BssSI	CACGAG	2 cut(s)	1019, 1860
BssT1I	CCWWGG	3 cut(s)	181, 372, 1557
Bst2BI	CACGAG	2 cut(s)	1019, 1860
Bst2UI	CCWGG	2 cut(s)	340, 350
Bst4CI	ACNGT	3 cut(s)	85, 1260, 1668
Bst6I	CTCTTC	4 cut(s)	26, 744, 858, 968
BstACI	GRCGYC	2 cut(s)	417, 638
BstAUI	TGTACA	1 cut(s)	933
BstBI	TTCGAA	1 cut(s)	861
BstC8I	GCNNGC	4 cut(s)	71, 95, 469, 1039
BstDEI	CTNAG	3 cut(s)	882, 1184, 1356
BstDSI	CCRYGG	1 cut(s)	1557
BstEII	GGTNACC	1 cut(s)	1103
BstF5I	GGATG	5 cut(s)	11, 174, 1309, 1588, 1660
BstFNI	CGCG	1 cut(s)	569
BstH2I	RGCGCY	2 cut(s)	142, 1580
BstHHI	GCGC	5 cut(s)	141, 464, 625, 1213, 1579
BstKTI	GATC	7 cut(s)	111, 345, 598, 726, 1116, 1693, 1770
BstMAI	GTCTC	4 cut(s)	326, 535, 1151, 1869
BstMBI	GATC	7 cut(s)	108, 342, 595, 723, 1113, 1690, 1767
BstMCI	CGRYCG	1 cut(s)	594
BstNI	CCWGG	2 cut(s)	340, 350
BstNSI	RCATGY	1 cut(s)	1052
BstPI	GGTNACC	1 cut(s)	1103
BstSCI	CCNGG	5 cut(s)	126, 127, 338, 348, 1737
BstSFI	CTRYAG	1 cut(s)	113
BstSLI	GKGCMC	2 cut(s)	95, 944
BstUI	CGCG	1 cut(s)	569
BstV1I	GCAGC	6 cut(s)	127, 341, 524, 766, 982, 1803
BstX2I	RGATCY	2 cut(s)	342, 723
BstXI	CCANNNNNNTGG	1 cut(s)	1163
BstYI	RGATCY	2 cut(s)	342, 723
Bsu15I	ATCGAT	1 cut(s)	1770
Bsu36I	CCTNAGG	1 cut(s)	1356
BsuTUI	ATCGAT	1 cut(s)	1770
BtgI	CCRYGG	1 cut(s)	1557
BtsCI	GGATG	5 cut(s)	11, 174, 1309, 1588, 1660
BtsI	GCAGTG	1 cut(s)	1801
BtsIMutI	CAGTG	1 cut(s)	1801
BveI	ACCTGC	1 cut(s)	329
Cac8I	GCNNGC	4 cut(s)	71, 95, 469, 1039
CfoI	GCGC	5 cut(s)	141, 464, 625, 1213, 1579
Cfr10I	RCCGGY	2 cut(s)	221, 998
Cfr13I	GGNCC	6 cut(s)	264, 376, 388, 587, 1554, 1610
Cfr9I	CCCGGG	1 cut(s)	127
ClaI	ATCGAT	1 cut(s)	1770
CseI	GACGC	3 cut(s)	406, 646, 1099
Csp6I	GTAC	6 cut(s)	172, 745, 837, 934, 1080, 1818
CviAII	CATG	9 cut(s)	160, 358, 735, 1049, 1151, 1244, 1508, 1551, 1558
CviQI	GTAC	6 cut(s)	172, 745, 837, 934, 1080, 1818
DdeI	CTNAG	3 cut(s)	882, 1184, 1356
DpnI	GATC	7 cut(s)	110, 344, 597, 725, 1115, 1692, 1769
DpnII	GATC	7 cut(s)	108, 342, 595, 723, 1113, 1690, 1767
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
EaeI	YGGCCR	3 cut(s)	397, 1190, 1761
Eam1104I	CTCTTC	4 cut(s)	26, 744, 858, 968
EarI	CTCTTC	4 cut(s)	26, 744, 858, 968
EciI	GGCGGA	4 cut(s)	179, 256, 484, 1343
Eco130I	CCWWGG	3 cut(s)	181, 372, 1557
Eco147I	AGGCCT	1 cut(s)	186
Eco24I	GRGCYC	2 cut(s)	134, 1255
Eco31I	GGTCTC	1 cut(s)	326
Eco47I	GGWCC	4 cut(s)	264, 388, 1554, 1610
Eco47III	AGCGCT	1 cut(s)	1578
Eco57I	CTGAAG	2 cut(s)	981, 1638
Eco81I	CCTNAGG	1 cut(s)	1356
Eco88I	CYCGRG	2 cut(s)	127, 443
Eco91I	GGTNACC	1 cut(s)	1103
EcoO109I	RGGNCCY	1 cut(s)	388
EcoO65I	GGTNACC	1 cut(s)	1103
EcoRII	CCWGG	2 cut(s)	338, 348
EcoT14I	CCWWGG	3 cut(s)	181, 372, 1557
EcoT22I	ATGCAT	2 cut(s)	817, 1423
EcoT38I	GRGCYC	2 cut(s)	134, 1255
ErhI	CCWWGG	3 cut(s)	181, 372, 1557
Esp3I	CGTCTC	2 cut(s)	535, 1869
FaeI	CATG	9 cut(s)	163, 361, 738, 1052, 1154, 1247, 1511, 1554, 1561
FalI	AAGNNNNNCTT	2 cut(s)	602, 634
FaqI	GGGAC	2 cut(s)	1180, 1231
FatI	CATG	9 cut(s)	159, 357, 734, 1048, 1150, 1243, 1507, 1550, 1557
FauI	CCCGC	3 cut(s)	24, 102, 246
FokI	GGATG	4 cut(s)	161, 1316, 1595, 1647
FriOI	GRGCYC	2 cut(s)	134, 1255
FspBI	CTAG	6 cut(s)	410, 894, 1214, 1380, 1677, 1815
GlaI	GCGC	5 cut(s)	140, 463, 624, 1212, 1578
GsaI	CCCAGC	1 cut(s)	645
GsuI	CTGGAG	4 cut(s)	42, 197, 469, 1395
HaeII	RGCGCY	2 cut(s)	142, 1580
HapII	CCGG	7 cut(s)	128, 222, 510, 534, 648, 999, 1739
HgaI	GACGC	3 cut(s)	406, 646, 1099
HhaI	GCGC	5 cut(s)	141, 464, 625, 1213, 1579
Hin1I	GRCGYC	2 cut(s)	417, 638
Hin1II	CATG	9 cut(s)	163, 361, 738, 1052, 1154, 1247, 1511, 1554, 1561
Hin6I	GCGC	5 cut(s)	139, 462, 623, 1211, 1577
HinP1I	GCGC	5 cut(s)	139, 462, 623, 1211, 1577
HincII	GTYRAC	2 cut(s)	54, 1437
HindII	GTYRAC	2 cut(s)	54, 1437
HinfI	GANTC	7 cut(s)	200, 254, 515, 664, 797, 821, 1144
HpaII	CCGG	7 cut(s)	128, 222, 510, 534, 648, 999, 1739
HphI	GGTGA	6 cut(s)	73, 211, 358, 1013, 1042, 1097
Hpy166II	GTNNAC	7 cut(s)	54, 855, 934, 1350, 1437, 1513, 1613
Hpy188I	TCNGA	3 cut(s)	253, 669, 961
Hpy8I	GTNNAC	7 cut(s)	54, 855, 934, 1350, 1437, 1513, 1613
Hpy99I	CGWCG	8 cut(s)	200, 299, 398, 422, 556, 640, 1090, 1093
HpyAV	CCTTC	4 cut(s)	1562, 1600, 1865, 1898
HpyCH4III	ACNGT	3 cut(s)	85, 1260, 1668
HpyCH4IV	ACGT	2 cut(s)	78, 528
HpyF3I	CTNAG	3 cut(s)	882, 1184, 1356
HpySE526I	ACGT	2 cut(s)	78, 528
Hsp92I	GRCGYC	2 cut(s)	417, 638
Hsp92II	CATG	9 cut(s)	163, 361, 738, 1052, 1154, 1247, 1511, 1554, 1561
HspAI	GCGC	5 cut(s)	139, 462, 623, 1211, 1577
Kzo9I	GATC	7 cut(s)	108, 342, 595, 723, 1113, 1690, 1767
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	4 cut(s)	137, 320, 650, 1414
Lsp1109I	GCAGC	6 cut(s)	127, 341, 524, 766, 982, 1803
LweI	GCATC	2 cut(s)	994, 1464
MaeI	CTAG	6 cut(s)	410, 894, 1214, 1380, 1677, 1815
MaeII	ACGT	2 cut(s)	78, 528
MaeIII	GTNAC	5 cut(s)	79, 1103, 1530, 1537, 1862
MalI	GATC	7 cut(s)	110, 344, 597, 725, 1115, 1692, 1769
MbiI	CCGCTC	2 cut(s)	19, 97
MboI	GATC	7 cut(s)	108, 342, 595, 723, 1113, 1690, 1767
MboII	GAAGA	7 cut(s)	13, 667, 761, 875, 985, 1147, 1604
MflI	RGATCY	2 cut(s)	342, 723
MhlI	GDGCHC	5 cut(s)	95, 134, 944, 1255, 1379
MlsI	TGGCCA	1 cut(s)	1192
MluCI	AATT	8 cut(s)	290, 380, 792, 886, 985, 1009, 1749, 1803
MluNI	TGGCCA	1 cut(s)	1192
MlyI	GAGTC	5 cut(s)	248, 658, 806, 830, 1153
MmeI	TCCRAC	3 cut(s)	276, 450, 1689
Mox20I	TGGCCA	1 cut(s)	1192
Mph1103I	ATGCAT	2 cut(s)	817, 1423
MroXI	GAANNNNTTC	1 cut(s)	977
MscI	TGGCCA	1 cut(s)	1192
MseI	TTAA	3 cut(s)	713, 849, 1281
MslI	CAYNNNNRTG	1 cut(s)	1382
Msp20I	TGGCCA	1 cut(s)	1192
MspI	CCGG	7 cut(s)	128, 222, 510, 534, 648, 999, 1739
MspR9I	CCNGG	5 cut(s)	128, 129, 340, 350, 1739
MvaI	CCWGG	2 cut(s)	340, 350
MvnI	CGCG	1 cut(s)	569
NciI	CCSGG	3 cut(s)	128, 129, 1739
NcoI	CCATGG	1 cut(s)	1557
NdeII	GATC	7 cut(s)	108, 342, 595, 723, 1113, 1690, 1767
NlaIII	CATG	9 cut(s)	163, 361, 738, 1052, 1154, 1247, 1511, 1554, 1561
NlaIV	GGNNCC	2 cut(s)	133, 1611
NmeAIII	GCCGAG	1 cut(s)	1789
NmuCI	GTSAC	5 cut(s)	79, 1103, 1530, 1537, 1862
NsiI	ATGCAT	2 cut(s)	817, 1423
NspI	RCATGY	1 cut(s)	1052
NspV	TTCGAA	1 cut(s)	861
OliI	CACNNNNGTG	1 cut(s)	1382
PaeR7I	CTCGAG	1 cut(s)	443
PaqCI	CACCTGC	1 cut(s)	329
PasI	CCCWGGG	1 cut(s)	349
PceI	AGGCCT	1 cut(s)	186
PciSI	GCTCTTC	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	3 cut(s)	303, 390, 591
PdmI	GAANNNNTTC	1 cut(s)	977
PfeI	GAWTC	2 cut(s)	200, 515
PflFI	GACNNNGTC	2 cut(s)	392, 416
PflMI	CCANNNNNTGG	1 cut(s)	160
PfoI	TCCNGGA	2 cut(s)	338, 1737
PleI	GAGTC	5 cut(s)	248, 658, 805, 829, 1152
PpsI	GAGTC	5 cut(s)	248, 658, 805, 829, 1152
PpuMI	RGGWCCY	1 cut(s)	388
Psp5II	RGGWCCY	1 cut(s)	388
Psp6I	CCWGG	2 cut(s)	338, 348
PspEI	GGTNACC	1 cut(s)	1103
PspFI	CCCAGC	1 cut(s)	641
PspGI	CCWGG	2 cut(s)	338, 348
PspN4I	GGNNCC	2 cut(s)	133, 1611
PspPI	GGNCC	6 cut(s)	264, 376, 388, 587, 1554, 1610
PspPPI	RGGWCCY	1 cut(s)	388
PstI	CTGCAG	1 cut(s)	117
PsuI	RGATCY	2 cut(s)	342, 723
PsyI	GACNNNGTC	2 cut(s)	392, 416
RsaI	GTAC	6 cut(s)	173, 746, 838, 935, 1081, 1819
RsaNI	GTAC	6 cut(s)	172, 745, 837, 934, 1080, 1818
RseI	CAYNNNNRTG	1 cut(s)	1382
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	3 cut(s)	713, 849, 1281
Sau3AI	GATC	7 cut(s)	108, 342, 595, 723, 1113, 1690, 1767
Sau96I	GGNCC	6 cut(s)	264, 376, 388, 587, 1554, 1610
ScaI	AGTACT	1 cut(s)	838
SchI	GAGTC	5 cut(s)	248, 658, 806, 830, 1153
ScrFI	CCNGG	5 cut(s)	128, 129, 340, 350, 1739
SduI	GDGCHC	5 cut(s)	95, 134, 944, 1255, 1379
SfaNI	GCATC	2 cut(s)	994, 1464
SfcI	CTRYAG	1 cut(s)	113
Sfr274I	CTCGAG	1 cut(s)	443
SfuI	TTCGAA	1 cut(s)	861
SinI	GGWCC	4 cut(s)	264, 388, 1554, 1610
SlaI	CTCGAG	1 cut(s)	443
SmaI	CCCGGG	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	1382
SmlI	CTYRAG	2 cut(s)	443, 1478
SmoI	CTYRAG	2 cut(s)	443, 1478
Sse9I	AATT	8 cut(s)	290, 380, 792, 886, 985, 1009, 1749, 1803
SseBI	AGGCCT	1 cut(s)	186
SspMI	CTAG	6 cut(s)	410, 894, 1214, 1380, 1677, 1815
StuI	AGGCCT	1 cut(s)	186
StyD4I	CCNGG	5 cut(s)	126, 127, 338, 348, 1737
StyI	CCWWGG	3 cut(s)	181, 372, 1557
TaaI	ACNGT	3 cut(s)	85, 1260, 1668
TaiI	ACGT	2 cut(s)	81, 531
TaqII	GACCGA	1 cut(s)	608
TasI	AATT	8 cut(s)	290, 380, 792, 886, 985, 1009, 1749, 1803
TatI	WGTACW	5 cut(s)	171, 836, 933, 1079, 1817
TauI	GCSGC	4 cut(s)	327, 467, 566, 569
TfiI	GAWTC	2 cut(s)	200, 515
Tru1I	TTAA	3 cut(s)	713, 849, 1281
Tru9I	TTAA	3 cut(s)	713, 849, 1281
TscAI	CASTG	1 cut(s)	1801
TseFI	GTSAC	5 cut(s)	79, 1103, 1530, 1537, 1862
TseI	GCWGC	6 cut(s)	115, 354, 537, 779, 995, 1791
Tsp45I	GTSAC	5 cut(s)	79, 1103, 1530, 1537, 1862
TspDTI	ATGAA	4 cut(s)	164, 374, 1148, 1259
TspGWI	ACGGA	4 cut(s)	78, 1454, 1556, 1893
TspMI	CCCGGG	1 cut(s)	127
TspRI	CASTG	1 cut(s)	1801
Tth111I	GACNNNGTC	2 cut(s)	392, 416
Van91I	CCANNNNNTGG	1 cut(s)	160
VpaK11BI	GGWCC	4 cut(s)	264, 388, 1554, 1610
XapI	RAATTY	3 cut(s)	290, 886, 1009
XbaI	TCTAGA	1 cut(s)	893
XceI	RCATGY	1 cut(s)	1052
XhoI	CTCGAG	1 cut(s)	443
XmaI	CCCGGG	1 cut(s)	127
XmnI	GAANNNNTTC	1 cut(s)	977
XspI	CTAG	6 cut(s)	410, 894, 1214, 1380, 1677, 1815
ZrmI	AGTACT	1 cut(s)	838
Zsp2I	ATGCAT	2 cut(s)	817, 1423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.