Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002390

Physical Location & Seq

Genomic Coordinates Forward (+)

5478702 .. 5483327

Gene Structure 4626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010931

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1851 bp

ATGTTTATTGCTAAGAAGAAACGTTTTTGCCTCTTCCGAAAAGGAGAGCCCTTTCTCTCTCTAAAGTCCAAAGCCATCAACTTTTCGCTTCTGGGTATTCAGGCCACGAAGAACACAAGCAGAATTGTTAGAATTGAAGGACCCAGACCGCCCTTCATGGATGAGTATTCCGGTAAAAGAGCTAGTGATGGACTTGTCTCTAGAAAGGGGCCTAGTCTTGTTTTGAGGGAAACTCCAAACAGAGATCGTAATGCTCAGGTCTGCAGCCGACTGGGATGCAGTGGAAGACTGAATTCTGTGAAAGGTGCTCAAATTGAAAAGGCCAAATCTTCAAAGCCTGCATTCCGCTCTTCTTCAAATGGGAAAGAGATAGTTGGAAGTTCCTCTAGGTCTTGCATTTCTGTTGGCAACTCAAGAAAATCCGGTAGAGAACCTTGCAAAAAGCTATCTTCTAATTTGGAAACAGATTCATCTGAAACCAGCAGTGTTCAGGATGATCCAGAAGTGTCAGAAGTCACTCCTCCACCTGGAAAGATTCAGAGAGGGCTTCACCCTGAATCTAAAAATGGGGAGTCTAGTGAAGTCTCCTTGATGGAAATTGGAAGCTCCGATGTATCATCAAATACCAGATCCTGGAGGAATTTCAATCACAGAACTGGATTGCGCAACCAAGAAACGTTATTGGGTTCTTCTATTCCTTTCGGATCTAAAAACAACAACCAGACAACACGAGCTAGCACAACCAGGAATGGCTTAAGAAATCTAAGGTGCAATTCAGTATCTGATGTTGTTCCGTCCAGTTGTTCATCATCAGACTCGAGCGTCAACAGGAGGGAGACCCTAAAGAAAAGAATTTCTGAAGGAGAAAGTAGCTCAGCTGCTAAGGGGAAGAAGATGAATGGGTCATCTTCTGGGCAAAACTCCAATTTGAGCCATGGAATCTCAATTGCTGATTCAAGAAGAGGTAGAAATATACCTCCTACCAGGGATAATGGTGTTGCGTCGGTTAGGACTCGGAGAACTGTTACTGGTCACACAAGGGCTAGGATTTCTAATCAAGGAACTGGAAACAATATGTCAAGCAATGGATCTTCTGCAGTTGGCCCTCATATGTCTCAACCTGAGATGTCTATCGATATGAATGGTGCTAGTTCATCACAACACTTATCTTCTGAAGCTCCTTTAAATCGGCCAAATTCTTATAGTAGACCAGGTAGTAGCAGTAGACCAGGTAGTGGCAGTGGGAGTTTACATGGCATGATGCGATCTGGTACTGCAGATATTGGTTTTTCCCGGTCACTAATGAATCAGGATGGTCAGCGACGCTACAACATGGATGGAATTGCAGAGGTATTGCTAGCACTGGAGAGGATTGAACAAGATGAAGAGCTATCATTTGAGCAAATACTTGTTCTTGAGACCAATTTGTTCCTGAATGGCCTAAACTTCTATGATCAGCATAGAGACATGAGACTGGATATCGATAACATGTCATATGAGGAATTGTTAGCATTAGAAGAGCGAATGGGTTCTGTAAGCACAGCATTGCCAGAAGAAGCACTGACAGATTGCATTAAGAAAAGCATCTATCAGTCTGAACCTCCAGAGGATGCATCCATAGGCTGTGATAATAAGGATGAAGTCAAATGCAGTATCTGCCAGGAGGAGTATGTGGCTGGAGACGAAGTTGGGAGGTTGCGGTGTGAGCATAGTTATCATTTAGTCTGTGTAAATCAATGGCTGCGGGTTAAGAATTGGTGCCCTATATGCAAGGCGGCAGCGGCAACAGCTGCGGGTGAACCCTCATCACCATCACCATCACCATCACCCTCATCACCATATTCCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

617

Amino Acids

66.88

Weight (kDa)

9.16

Isoelectric Point (pI)

56.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	540 - 591	7.9e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	549 - 591	2.5e-11	Ring finger domain
zf-C3HC4_2	PF13923	549 - 590	2.1e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31450 AT4G31450 AT5G10650 AT5G10650 AT5G10650 AT5G24870 AT5G24870 AT5G24870
fragaria_vesca	FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760 FvH4_2g36760
malus_domestica	MD08G1128400.v1.1 MD15G1107900.v1.1
prunus_persica	Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1 Prupe.1G460200_v2.0.a1
pyrus_communis	pycom08g10730 pycom15g09860
rosa_chinensis	RchiOBHm_Chr6g0304981
rosa_laevigata	RLG00000010931
rosa_multiflora	Rmu_co8384967.1_g000001 Rmu_sc0026376.1_g000001 Rmu_sc0028342.1_g000002
rosa_roxburghii	Rroxscaffold_7G00163300
rosa_rugosa	Rorug06G0336500 Rorug06G0336600 Rorug06G0336600
rosa_samantha	Rh6AG447900 Rh6BG453000 Rh6CG461600 Rh6DG448600
rosa_wichuraiana	Rw6G039010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	821
Acc16I	TGCGCA	1 cut(s)	665
AccB1I	GGYRCC	1 cut(s)	1758
AccB7I	CCANNNNNTGG	2 cut(s)	633, 1235
AccBSI	CCGCTC	1 cut(s)	348
AccI	GTMKAC	2 cut(s)	1207, 1225
AciI	CCGC	7 cut(s)	149, 346, 1699, 1744, 1775, 1781, 1793
AclI	AACGTT	2 cut(s)	22, 677
AclWI	GGATC	4 cut(s)	491, 624, 712, 1096
AcoI	YGGCCR	1 cut(s)	1190
AcsI	RAATTY	4 cut(s)	292, 640, 852, 1195
AcuI	CTGAAG	2 cut(s)	879, 1194
AfaI	GTAC	1 cut(s)	1273
AfiI	CCNNNNNNNGG	3 cut(s)	527, 633, 1235
AflII	CTTAAG	1 cut(s)	754
AflIII	ACRYGT	1 cut(s)	1488
AgsI	TTSAA	7 cut(s)	137, 317, 333, 357, 646, 957, 1376
AjnI	CCWGG	7 cut(s)	526, 632, 743, 983, 1210, 1228, 1659
AluBI	AGCT	9 cut(s)	182, 445, 606, 734, 873, 878, 1178, 1390, 1790
AluI	AGCT	9 cut(s)	182, 445, 606, 734, 873, 878, 1178, 1390, 1790
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	8 cut(s)	202, 589, 830, 1119, 1412, 1458, 1465, 1674
AlwI	GGATC	4 cut(s)	491, 624, 712, 1096
AlwNI	CAGNNNCTG	3 cut(s)	633, 782, 1656
Ama87I	CYCGRG	1 cut(s)	817
AoxI	GGCC	6 cut(s)	102, 209, 321, 1102, 1190, 1438
ApeKI	GCWGC	5 cut(s)	264, 878, 1741, 1778, 1790
ApoI	RAATTY	4 cut(s)	292, 640, 852, 1195
Asp700I	GAANNNNTTC	1 cut(s)	1528
AspLEI	GCGC	1 cut(s)	666
AspS9I	GGNCC	3 cut(s)	140, 209, 1103
AsuC2I	CCSGG	1 cut(s)	1294
AsuHPI	GGTGA	7 cut(s)	542, 1800, 1806, 1808, 1812, 1818, 1827
AsuNHI	GCTAGC	2 cut(s)	734, 1357
AvaI	CYCGRG	1 cut(s)	817
AvaII	GGWCC	1 cut(s)	140
BaeGI	GKGCMC	1 cut(s)	1763
BanI	GGYRCC	1 cut(s)	1758
BanII	GRGCYC	1 cut(s)	51
BauI	CACGAG	1 cut(s)	729
BbsI	GAAGAC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	5 cut(s)	276, 865, 1728, 1777, 1790
BccI	CCATC	8 cut(s)	83, 182, 586, 1307, 1331, 1819, 1825, 1831
BcgI	CGANNNNNNTGC	2 cut(s)	258, 292
BciT130I	CCWGG	7 cut(s)	528, 634, 745, 985, 1212, 1230, 1661
BclI	TGATCA	1 cut(s)	1453
BcnI	CCSGG	1 cut(s)	1294
BcoDI	GTCTC	8 cut(s)	202, 589, 830, 1119, 1412, 1458, 1465, 1674
BfaI	CTAG	9 cut(s)	183, 201, 213, 387, 576, 735, 1044, 1149, 1358
BfmI	CTRYAG	3 cut(s)	262, 1095, 1275
BfrI	CTTAAG	1 cut(s)	754
BisI	GCNGC	7 cut(s)	265, 879, 1742, 1776, 1779, 1782, 1791
BlpI	GCTNAGC	1 cut(s)	874
BlsI	GCNGC	7 cut(s)	266, 880, 1743, 1777, 1780, 1783, 1792
Bme1390I	CCNGG	8 cut(s)	528, 634, 745, 985, 1212, 1230, 1294, 1661
Bme18I	GGWCC	1 cut(s)	140
BmeT110I	CYCGRG	1 cut(s)	817
BmgT120I	GGNCC	3 cut(s)	140, 209, 1103
BmiI	GGNNCC	3 cut(s)	142, 210, 1760
BmrFI	CCNGG	8 cut(s)	528, 634, 745, 985, 1212, 1230, 1294, 1661
BmrI	ACTGGG	1 cut(s)	281
BmsI	GCATC	5 cut(s)	266, 1251, 1593, 1600, 1622
BmtI	GCTAGC	2 cut(s)	738, 1361
BmuI	ACTGGG	1 cut(s)	281
BpiI	GAAGAC	1 cut(s)	292
BplI	GAGNNNNNCTC	2 cut(s)	217, 249
BpmI	CTGGAG	4 cut(s)	655, 1385, 1587, 1698
Bpu10I	CCTNAGC	2 cut(s)	255, 882
Bpu1102I	GCTNAGC	1 cut(s)	874
BpuEI	CTTGAG	2 cut(s)	397, 1436
BpuMI	CCSGG	1 cut(s)	1294
Bsa29I	ATCGAT	2 cut(s)	1134, 1482
BsaBI	GATNNNNATC	1 cut(s)	1130
BsaI	GGTCTC	2 cut(s)	830, 1412
BsaJI	CCNNGG	2 cut(s)	934, 984
BsaWI	WCCGGW	2 cut(s)	170, 422
BsaXI	ACNNNNNCTCC	2 cut(s)	1671, 1701
Bsc4I	CCNNNNNNNGG	3 cut(s)	527, 633, 1235
Bse1I	ACTGG	7 cut(s)	276, 661, 798, 1033, 1069, 1368, 1479
Bse3DI	GCAATG	2 cut(s)	1090, 1544
Bse8I	GATNNNNATC	1 cut(s)	1130
BseBI	CCWGG	7 cut(s)	528, 634, 745, 985, 1212, 1230, 1661
BseCI	ATCGAT	2 cut(s)	1134, 1482
BseDI	CCNNGG	2 cut(s)	934, 984
BseGI	GGATG	8 cut(s)	166, 281, 499, 1318, 1342, 1613, 1615, 1642
BseJI	GATNNNNATC	1 cut(s)	1130
BseLI	CCNNNNNNNGG	3 cut(s)	527, 633, 1235
BseMI	GCAATG	2 cut(s)	1090, 1544
BseMII	CTCAG	3 cut(s)	269, 888, 1113
BseNI	ACTGG	7 cut(s)	276, 661, 798, 1033, 1069, 1368, 1479
BseRI	GAGGAG	2 cut(s)	510, 1679
BseSI	GKGCMC	1 cut(s)	1763
BseXI	GCAGC	5 cut(s)	276, 865, 1728, 1777, 1790
BshFI	GGCC	6 cut(s)	104, 211, 323, 1104, 1192, 1440
BshNI	GGYRCC	1 cut(s)	1758
BshVI	ATCGAT	2 cut(s)	1134, 1482
BsiHKAI	GWGCWC	1 cut(s)	310
BsiHKCI	CYCGRG	1 cut(s)	817
BsiSI	CCGG	3 cut(s)	171, 423, 1294
BslI	CCNNNNNNNGG	3 cut(s)	527, 633, 1235
BsmAI	GTCTC	8 cut(s)	202, 589, 830, 1119, 1412, 1458, 1465, 1674
BsmBI	CGTCTC	1 cut(s)	1674
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	6 cut(s)	104, 211, 323, 1104, 1192, 1440
Bso31I	GGTCTC	2 cut(s)	830, 1412
BsoBI	CYCGRG	1 cut(s)	817
Bsp1286I	GDGCHC	3 cut(s)	51, 310, 1763
Bsp143I	GATC	7 cut(s)	244, 496, 629, 704, 1088, 1265, 1453
Bsp1720I	GCTNAGC	1 cut(s)	874
Bsp19I	CCATGG	1 cut(s)	934
BspACI	CCGC	7 cut(s)	149, 346, 1699, 1744, 1775, 1781, 1793
BspANI	GGCC	6 cut(s)	104, 211, 323, 1104, 1192, 1440
BspCNI	CTCAG	3 cut(s)	268, 887, 1114
BspDI	ATCGAT	2 cut(s)	1134, 1482
BspLI	GGNNCC	3 cut(s)	142, 210, 1760
BspMAI	CTGCAG	3 cut(s)	266, 1099, 1279
BspOI	GCTAGC	2 cut(s)	738, 1361
BspPI	GGATC	4 cut(s)	491, 624, 712, 1096
BspQI	GCTCTTC	3 cut(s)	355, 1380, 1512
BspT107I	GGYRCC	1 cut(s)	1758
BspTI	CTTAAG	1 cut(s)	754
BspTNI	GGTCTC	2 cut(s)	830, 1412
BsrBI	CCGCTC	1 cut(s)	348
BsrDI	GCAATG	2 cut(s)	1090, 1544
BsrI	ACTGG	7 cut(s)	276, 661, 798, 1033, 1069, 1368, 1479
BssECI	CCNNGG	2 cut(s)	934, 984
BssMI	GATC	7 cut(s)	244, 496, 629, 704, 1088, 1265, 1453
BssSI	CACGAG	1 cut(s)	729
BssT1I	CCWWGG	1 cut(s)	934
Bst2BI	CACGAG	1 cut(s)	729
Bst2UI	CCWGG	7 cut(s)	528, 634, 745, 985, 1212, 1230, 1661
Bst4CI	ACNGT	1 cut(s)	1024
Bst6I	CTCTTC	5 cut(s)	38, 355, 955, 1380, 1512
BstAFI	CTTAAG	1 cut(s)	754
BstAPI	GCANNNNNTGC	2 cut(s)	1656, 1790
BstC8I	GCNNGC	3 cut(s)	339, 736, 1359
BstDEI	CTNAG	6 cut(s)	12, 255, 764, 874, 882, 1122
BstDSI	CCRYGG	1 cut(s)	934
BstF5I	GGATG	8 cut(s)	166, 281, 499, 1318, 1342, 1613, 1615, 1642
BstHHI	GCGC	1 cut(s)	666
BstKTI	GATC	7 cut(s)	247, 499, 632, 707, 1091, 1268, 1456
BstMAI	GTCTC	8 cut(s)	202, 589, 830, 1119, 1412, 1458, 1465, 1674
BstMBI	GATC	7 cut(s)	244, 496, 629, 704, 1088, 1265, 1453
BstMWI	GCNNNNNNNGC	6 cut(s)	1656, 1705, 1767, 1781, 1787, 1790
BstNI	CCWGG	7 cut(s)	528, 634, 745, 985, 1212, 1230, 1661
BstNSI	RCATGY	1 cut(s)	1492
BstSCI	CCNGG	8 cut(s)	526, 632, 743, 983, 1210, 1228, 1292, 1659
BstSFI	CTRYAG	3 cut(s)	262, 1095, 1275
BstSLI	GKGCMC	1 cut(s)	1763
BstV1I	GCAGC	5 cut(s)	276, 865, 1728, 1777, 1790
BstV2I	GAAGAC	1 cut(s)	292
BstX2I	RGATCY	3 cut(s)	629, 704, 1088
BstYI	RGATCY	3 cut(s)	629, 704, 1088
Bsu15I	ATCGAT	2 cut(s)	1134, 1482
BsuRI	GGCC	6 cut(s)	104, 211, 323, 1104, 1192, 1440
BsuTUI	ATCGAT	2 cut(s)	1134, 1482
BtgI	CCRYGG	1 cut(s)	934
BtsCI	GGATG	8 cut(s)	166, 281, 499, 1318, 1342, 1613, 1615, 1642
BtsI	GCAGTG	3 cut(s)	286, 490, 1246
BtsIMutI	CAGTG	5 cut(s)	286, 490, 1246, 1361, 1559
Cac8I	GCNNGC	3 cut(s)	339, 736, 1359
CaiI	CAGNNNCTG	3 cut(s)	633, 782, 1656
CfoI	GCGC	1 cut(s)	666
Cfr13I	GGNCC	3 cut(s)	140, 209, 1103
ClaI	ATCGAT	2 cut(s)	1134, 1482
CseI	GACGC	3 cut(s)	811, 990, 1332
CsiI	ACCWGGT	2 cut(s)	1210, 1228
Csp6I	GTAC	1 cut(s)	1272
CviAII	CATG	7 cut(s)	157, 935, 1253, 1258, 1333, 1468, 1489
CviQI	GTAC	1 cut(s)	1272
DdeI	CTNAG	6 cut(s)	12, 255, 764, 874, 882, 1122
DpnI	GATC	7 cut(s)	246, 498, 631, 706, 1090, 1267, 1455
DpnII	GATC	7 cut(s)	244, 496, 629, 704, 1088, 1265, 1453
DraI	TTTAAA	1 cut(s)	1185
DrdI	GACNNNNNNGTC	1 cut(s)	821
DseDI	GACNNNNNNGTC	1 cut(s)	821
EaeI	YGGCCR	1 cut(s)	1190
Eam1104I	CTCTTC	5 cut(s)	38, 355, 955, 1380, 1512
EarI	CTCTTC	5 cut(s)	38, 355, 955, 1380, 1512
Eco130I	CCWWGG	1 cut(s)	934
Eco24I	GRGCYC	1 cut(s)	51
Eco31I	GGTCTC	2 cut(s)	830, 1412
Eco32I	GATATC	1 cut(s)	1480
Eco47I	GGWCC	1 cut(s)	140
Eco57I	CTGAAG	2 cut(s)	879, 1194
Eco88I	CYCGRG	1 cut(s)	817
EcoO109I	RGGNCCY	2 cut(s)	140, 209
EcoRI	GAATTC	1 cut(s)	292
EcoRII	CCWGG	7 cut(s)	526, 632, 743, 983, 1210, 1228, 1659
EcoRV	GATATC	1 cut(s)	1480
EcoT14I	CCWWGG	1 cut(s)	934
EcoT22I	ATGCAT	1 cut(s)	1615
EcoT38I	GRGCYC	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	934
Esp3I	CGTCTC	1 cut(s)	1674
FaeI	CATG	7 cut(s)	160, 938, 1256, 1261, 1336, 1471, 1492
FatI	CATG	7 cut(s)	156, 934, 1252, 1257, 1332, 1467, 1488
FauI	CCCGC	2 cut(s)	1737, 1786
FauNDI	CATATG	2 cut(s)	1110, 1495
FbaI	TGATCA	1 cut(s)	1453
FblI	GTMKAC	2 cut(s)	1207, 1225
Fnu4HI	GCNGC	7 cut(s)	265, 879, 1742, 1776, 1779, 1782, 1791
FokI	GGATG	8 cut(s)	173, 288, 506, 1325, 1349, 1600, 1622, 1649
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	7 cut(s)	265, 879, 1742, 1776, 1779, 1782, 1791
FspBI	CTAG	9 cut(s)	183, 201, 213, 387, 576, 735, 1044, 1149, 1358
FspI	TGCGCA	1 cut(s)	665
GlaI	GCGC	1 cut(s)	665
GluI	GCNGC	7 cut(s)	265, 879, 1742, 1776, 1779, 1782, 1791
GsuI	CTGGAG	4 cut(s)	655, 1385, 1587, 1698
HaeIII	GGCC	6 cut(s)	104, 211, 323, 1104, 1192, 1440
HapII	CCGG	3 cut(s)	171, 423, 1294
HgaI	GACGC	3 cut(s)	811, 990, 1332
HhaI	GCGC	1 cut(s)	666
Hin1II	CATG	7 cut(s)	160, 938, 1256, 1261, 1336, 1471, 1492
Hin6I	GCGC	1 cut(s)	664
HinP1I	GCGC	1 cut(s)	664
HincII	GTYRAC	1 cut(s)	826
HindII	GTYRAC	1 cut(s)	826
HinfI	GANTC	9 cut(s)	467, 535, 557, 572, 815, 939, 953, 1012, 1306
HpaII	CCGG	3 cut(s)	171, 423, 1294
HphI	GGTGA	7 cut(s)	542, 1800, 1806, 1808, 1812, 1818, 1827
Hpy166II	GTNNAC	5 cut(s)	826, 1208, 1226, 1250, 1799
Hpy188III	TCNNGA	9 cut(s)	201, 414, 491, 500, 957, 1310, 1415, 1432, 1604
Hpy8I	GTNNAC	5 cut(s)	826, 1208, 1226, 1250, 1799
Hpy99I	CGWCG	2 cut(s)	1006, 1326
HpyAV	CCTTC	3 cut(s)	131, 163, 854
HpyCH4III	ACNGT	1 cut(s)	1024
HpyCH4IV	ACGT	2 cut(s)	22, 677
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1656, 1705, 1767, 1781, 1787, 1790
HpyF3I	CTNAG	6 cut(s)	12, 255, 764, 874, 882, 1122
HpySE526I	ACGT	2 cut(s)	22, 677
Hsp92II	CATG	7 cut(s)	160, 938, 1256, 1261, 1336, 1471, 1492
HspAI	GCGC	1 cut(s)	664
Ksp22I	TGATCA	1 cut(s)	1453
Kzo9I	GATC	7 cut(s)	244, 496, 629, 704, 1088, 1265, 1453
LguI	GCTCTTC	3 cut(s)	355, 1380, 1512
LmnI	GCTCC	2 cut(s)	611, 1183
Lsp1109I	GCAGC	5 cut(s)	276, 865, 1728, 1777, 1790
LweI	GCATC	5 cut(s)	266, 1251, 1593, 1600, 1622
MabI	ACCWGGT	2 cut(s)	1210, 1228
MaeI	CTAG	9 cut(s)	183, 201, 213, 387, 576, 735, 1044, 1149, 1358
MaeII	ACGT	2 cut(s)	22, 677
MaeIII	GTNAC	4 cut(s)	514, 1024, 1031, 1296
MalI	GATC	7 cut(s)	246, 498, 631, 706, 1090, 1267, 1455
MbiI	CCGCTC	1 cut(s)	348
MboI	GATC	7 cut(s)	244, 496, 629, 704, 1088, 1265, 1453
MfeI	CAATTG	1 cut(s)	945
MflI	RGATCY	3 cut(s)	629, 704, 1088
MhlI	GDGCHC	3 cut(s)	51, 310, 1763
MlyI	GAGTC	3 cut(s)	581, 809, 1006
MmeI	TCCRAC	1 cut(s)	355
Mph1103I	ATGCAT	1 cut(s)	1615
MroXI	GAANNNNTTC	1 cut(s)	1528
MseI	TTAA	4 cut(s)	755, 1184, 1575, 1749
MspA1I	CMGCKG	3 cut(s)	878, 1781, 1790
MspCI	CTTAAG	1 cut(s)	754
MspI	CCGG	3 cut(s)	171, 423, 1294
MspR9I	CCNGG	8 cut(s)	528, 634, 745, 985, 1212, 1230, 1294, 1661
MunI	CAATTG	1 cut(s)	945
Mva1269I	GAATGC	1 cut(s)	341
MvaI	CCWGG	7 cut(s)	528, 634, 745, 985, 1212, 1230, 1661
MwoI	GCNNNNNNNGC	6 cut(s)	1656, 1705, 1767, 1781, 1787, 1790
NciI	CCSGG	1 cut(s)	1294
NcoI	CCATGG	1 cut(s)	934
NdeI	CATATG	2 cut(s)	1110, 1495
NdeII	GATC	7 cut(s)	244, 496, 629, 704, 1088, 1265, 1453
NheI	GCTAGC	2 cut(s)	734, 1357
NlaIII	CATG	7 cut(s)	160, 938, 1256, 1261, 1336, 1471, 1492
NlaIV	GGNNCC	3 cut(s)	142, 210, 1760
NmuCI	GTSAC	3 cut(s)	514, 1031, 1296
NsbI	TGCGCA	1 cut(s)	665
NsiI	ATGCAT	1 cut(s)	1615
NspI	RCATGY	1 cut(s)	1492
PaeR7I	CTCGAG	1 cut(s)	817
PciI	ACATGT	1 cut(s)	1488
PciSI	GCTCTTC	3 cut(s)	355, 1380, 1512
PctI	GAATGC	1 cut(s)	341
PdmI	GAANNNNTTC	1 cut(s)	1528
PfeI	GAWTC	6 cut(s)	467, 535, 557, 939, 953, 1306
PflMI	CCANNNNNTGG	2 cut(s)	633, 1235
PfoI	TCCNGGA	1 cut(s)	632
PkrI	GCNGC	7 cut(s)	266, 880, 1743, 1777, 1780, 1783, 1792
PleI	GAGTC	3 cut(s)	580, 809, 1006
PpsI	GAGTC	3 cut(s)	580, 809, 1006
PpuMI	RGGWCCY	1 cut(s)	140
PscI	ACATGT	1 cut(s)	1488
Psp1406I	AACGTT	2 cut(s)	22, 677
Psp5II	RGGWCCY	1 cut(s)	140
Psp6I	CCWGG	7 cut(s)	526, 632, 743, 983, 1210, 1228, 1659
PspGI	CCWGG	7 cut(s)	526, 632, 743, 983, 1210, 1228, 1659
PspN4I	GGNNCC	3 cut(s)	142, 210, 1760
PspPI	GGNCC	3 cut(s)	140, 209, 1103
PspPPI	RGGWCCY	1 cut(s)	140
PspXI	VCTCGAGB	1 cut(s)	817
PstI	CTGCAG	3 cut(s)	266, 1099, 1279
PstNI	CAGNNNCTG	3 cut(s)	633, 782, 1656
PsuI	RGATCY	3 cut(s)	629, 704, 1088
PvuII	CAGCTG	2 cut(s)	878, 1790
RsaI	GTAC	1 cut(s)	1273
RsaNI	GTAC	1 cut(s)	1272
SapI	GCTCTTC	3 cut(s)	355, 1380, 1512
SaqAI	TTAA	4 cut(s)	755, 1184, 1575, 1749
SatI	GCNGC	7 cut(s)	265, 879, 1742, 1776, 1779, 1782, 1791
Sau3AI	GATC	7 cut(s)	244, 496, 629, 704, 1088, 1265, 1453
Sau96I	GGNCC	3 cut(s)	140, 209, 1103
SchI	GAGTC	3 cut(s)	581, 809, 1006
ScrFI	CCNGG	8 cut(s)	528, 634, 745, 985, 1212, 1230, 1294, 1661
SduI	GDGCHC	3 cut(s)	51, 310, 1763
SexAI	ACCWGGT	2 cut(s)	1210, 1228
SfaNI	GCATC	5 cut(s)	266, 1251, 1593, 1600, 1622
SfcI	CTRYAG	3 cut(s)	262, 1095, 1275
Sfr274I	CTCGAG	1 cut(s)	817
SinI	GGWCC	1 cut(s)	140
SlaI	CTCGAG	1 cut(s)	817
SmlI	CTYRAG	4 cut(s)	412, 754, 817, 1415
SmoI	CTYRAG	4 cut(s)	412, 754, 817, 1415
SsiI	CCGC	7 cut(s)	149, 346, 1699, 1744, 1775, 1781, 1793
SspMI	CTAG	9 cut(s)	183, 201, 213, 387, 576, 735, 1044, 1149, 1358
StyD4I	CCNGG	8 cut(s)	526, 632, 743, 983, 1210, 1228, 1292, 1659
StyI	CCWWGG	1 cut(s)	934
TaaI	ACNGT	1 cut(s)	1024
TaiI	ACGT	2 cut(s)	25, 680
TaqI	TCGA	3 cut(s)	818, 1134, 1482
TauI	GCSGC	2 cut(s)	1778, 1784
TfiI	GAWTC	6 cut(s)	467, 535, 557, 939, 953, 1306
Tru1I	TTAA	4 cut(s)	755, 1184, 1575, 1749
Tru9I	TTAA	4 cut(s)	755, 1184, 1575, 1749
TscAI	CASTG	5 cut(s)	286, 490, 1246, 1368, 1566
TseFI	GTSAC	3 cut(s)	514, 1031, 1296
TseI	GCWGC	5 cut(s)	264, 878, 1741, 1778, 1790
Tsp45I	GTSAC	3 cut(s)	514, 1031, 1296
TspDTI	ATGAA	9 cut(s)	145, 459, 795, 911, 1143, 1154, 1319, 1398, 1653
TspGWI	ACGGA	1 cut(s)	783
TspRI	CASTG	5 cut(s)	286, 490, 1246, 1368, 1566
Van91I	CCANNNNNTGG	2 cut(s)	633, 1235
Vha464I	CTTAAG	1 cut(s)	754
VpaK11BI	GGWCC	1 cut(s)	140
XapI	RAATTY	4 cut(s)	292, 640, 852, 1195
XbaI	TCTAGA	1 cut(s)	200
XceI	RCATGY	1 cut(s)	1492
XhoI	CTCGAG	1 cut(s)	817
XmiI	GTMKAC	2 cut(s)	1207, 1225
XmnI	GAANNNNTTC	1 cut(s)	1528
XspI	CTAG	9 cut(s)	183, 201, 213, 387, 576, 735, 1044, 1149, 1358
Zsp2I	ATGCAT	1 cut(s)	1615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.