Rw6G039010

Ring finger domain

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
63073360 .. 63077496
4137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G039010.1

Sequence Viewer

Length: 1341 bp
ATGGATGAGTATTCCGGTAAAAGAGCTAGTGATGGACTTGTCTCTAGAAAGGGGCCTAGTCTTGTTTTGAGGGAAACTCCAAACAGAGATCGTAATGCTCAGGTCTGCAGCCGACTGGGATGCAGTGGAAGACTGAATTCTGTGAAAGGTGCTCAAATTGAAAAGGCCAAATCTTCAAAGCCTGCATTCCGCTCTTCTTCAAATGGGAAAGAGATAGTAGGAAGTTCCTCTAGGTCTTGTATTTCTGTTGGCAACTCAAGAAAATCCGGTAGAGAACCTTGCAAAAAGCTATCTTCTAATTTGGAAACAGATTCATCTGAAACCAGCAGTGTTCAGGATGATCCAGAAGTGTCAGAAGTCACTCCTCCACCTGGAAAGATTCAGAGAGGGCTTCACCCTGAATCTAAAAATGGGGAGTCTAGTGAAGTCTCCTTGATGGAAACTGGAAGCTCTGATGTATCATCAAATACCAGATCCCGGAGGAATTTCAATCAGAGAACTGGATTGCGCAACCAAGAAACGTTATTGGGTTCTTCTGTTCCTTTCGGATCTAAAAACAACAACCAGACAACACGAGCTAGCACAACCAGGAATGGCTTAAGAAATCTAAGGTGCAATTCAGTATCTGATGTTGTTCCGTCCAGTTGTTCATCATCAGATTCGAGCGTCAACAGGAGGGAGACCCTAAAGAAAAGAATTTCTGAAGGAGAAAGTAGCTCAGCTGCTAAGGGGAAGAAGATGAATGGGTCATCTTCTGGGCAAAACTCCAATTCGAGCCATGGAATCTCAATTGCTGATTCAAGAAGAGGTAGAAATATACCTCCTAACAGGGATAATGGTGTTGCGTCGGTTAGGACTCGGAGAACTGTTACTGGTCACACAAGGGCTAGGATTTCTAATCAAGGAAGTGGAAACAATATGTCAAGCAATGGATCTTCTGCAGTTGGCCCTCATATGTCTCAACCTGAGATGTCTATCGATATGAATGGTGCTAGTTCATCACAACACTTATCTTCTGAAGCTCCTTTAAATCGGCCAAATTCTTATAGTAGACCAGGTAGTAGCAGTAGACCAGGTAGTGGCAGTGGGAGTTTACATGGCATGATGCGATCTGGTACTGCAGATATTGGTTTTTCCCGGTCTCTAATGAATCAGGATGGTCAGCGACGCTACAACATGGATGGAATTGCAGAGGTATTGCTAGCACTGGAGAGGATTGAACAAGATGAAGAGCTATCATTTGAGGTAGTAAATTATAGGGTTTGGGTGTTTCTGTTCAGTTGGCTGAGTTTTGTTGTTAAAACTATTATTTGTCTTATTGCAGCAAATACTTGTTCTTGA

Protein Analysis

446

Amino Acids

47.84

Weight (kDa)

9.99

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 509
AccB7I CCANNNNNTGG 1 cut(s) 1079
AccBSI CCGCTC 1 cut(s) 192
AccI GTMKAC 2 cut(s) 1051, 1069
AciI CCGC 1 cut(s) 190
AclI AACGTT 1 cut(s) 521
AclWI GGATC 4 cut(s) 335, 468, 556, 940
AcoI YGGCCR 1 cut(s) 1034
AcsI RAATTY 4 cut(s) 136, 484, 696, 1039
AcuI CTGAAG 2 cut(s) 723, 1038
AfaI GTAC 1 cut(s) 1117
AfiI CCNNNNNNNGG 3 cut(s) 371, 477, 1079
AflII CTTAAG 1 cut(s) 598
AgsI TTSAA 6 cut(s) 161, 177, 201, 490, 801, 1220
AjnI CCWGG 4 cut(s) 370, 587, 1054, 1072
AluBI AGCT 8 cut(s) 26, 289, 450, 578, 717, 722, 1022, 1234
AluI AGCT 8 cut(s) 26, 289, 450, 578, 717, 722, 1022, 1234
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 5 cut(s) 46, 433, 674, 963, 1146
AlwI GGATC 4 cut(s) 335, 468, 556, 940
AlwNI CAGNNNCTG 1 cut(s) 626
AoxI GGCC 4 cut(s) 53, 165, 946, 1034
ApeKI GCWGC 3 cut(s) 108, 722, 1322
ApoI RAATTY 4 cut(s) 136, 484, 696, 1039
AspLEI GCGC 1 cut(s) 510
AspS9I GGNCC 2 cut(s) 53, 947
AsuC2I CCSGG 2 cut(s) 478, 1138
AsuHPI GGTGA 1 cut(s) 386
AsuNHI GCTAGC 2 cut(s) 578, 1201
BauI CACGAG 1 cut(s) 573
BbsI GAAGAC 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 3 cut(s) 120, 709, 1334
BccI CCATC 4 cut(s) 26, 430, 1151, 1175
BcgI CGANNNNNNTGC 2 cut(s) 102, 136
BciT130I CCWGG 4 cut(s) 372, 589, 1056, 1074
BcnI CCSGG 2 cut(s) 478, 1138
BcoDI GTCTC 5 cut(s) 46, 433, 674, 963, 1146
BfaI CTAG 9 cut(s) 27, 45, 57, 231, 420, 579, 888, 993, 1202
BfmI CTRYAG 3 cut(s) 106, 939, 1119
BfrI CTTAAG 1 cut(s) 598
BisI GCNGC 3 cut(s) 109, 723, 1323
BlpI GCTNAGC 1 cut(s) 718
BlsI GCNGC 3 cut(s) 110, 724, 1324
Bme1390I CCNGG 6 cut(s) 372, 478, 589, 1056, 1074, 1138
BmgT120I GGNCC 2 cut(s) 53, 947
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 6 cut(s) 372, 478, 589, 1056, 1074, 1138
BmrI ACTGGG 1 cut(s) 125
BmsI GCATC 2 cut(s) 110, 1095
BmtI GCTAGC 2 cut(s) 582, 1205
BmuI ACTGGG 1 cut(s) 125
BpiI GAAGAC 1 cut(s) 136
BplI GAGNNNNNCTC 2 cut(s) 61, 93
BpmI CTGGAG 1 cut(s) 1229
Bpu10I CCTNAGC 2 cut(s) 99, 726
Bpu1102I GCTNAGC 1 cut(s) 718
BpuEI CTTGAG 1 cut(s) 241
BpuMI CCSGG 2 cut(s) 478, 1138
Bsa29I ATCGAT 1 cut(s) 978
BsaBI GATNNNNATC 1 cut(s) 974
BsaI GGTCTC 2 cut(s) 674, 1146
BsaJI CCNNGG 1 cut(s) 778
BsaWI WCCGGW 2 cut(s) 14, 266
Bsc4I CCNNNNNNNGG 3 cut(s) 371, 477, 1079
Bse1I ACTGG 6 cut(s) 120, 448, 505, 642, 877, 1212
Bse3DI GCAATG 1 cut(s) 934
Bse8I GATNNNNATC 1 cut(s) 974
BseBI CCWGG 4 cut(s) 372, 589, 1056, 1074
BseCI ATCGAT 1 cut(s) 978
BseDI CCNNGG 1 cut(s) 778
BseGI GGATG 5 cut(s) 10, 125, 343, 1162, 1186
BseJI GATNNNNATC 1 cut(s) 974
BseLI CCNNNNNNNGG 3 cut(s) 371, 477, 1079
BseMI GCAATG 1 cut(s) 934
BseMII CTCAG 4 cut(s) 113, 732, 957, 1277
BseNI ACTGG 6 cut(s) 120, 448, 505, 642, 877, 1212
BseRI GAGGAG 1 cut(s) 354
BseXI GCAGC 3 cut(s) 120, 709, 1334
BshFI GGCC 4 cut(s) 55, 167, 948, 1036
BshVI ATCGAT 1 cut(s) 978
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 4 cut(s) 15, 267, 478, 1138
BslI CCNNNNNNNGG 3 cut(s) 371, 477, 1079
BsmAI GTCTC 5 cut(s) 46, 433, 674, 963, 1146
BsmI GAATGC 1 cut(s) 185
BsnI GGCC 4 cut(s) 55, 167, 948, 1036
Bso31I GGTCTC 2 cut(s) 674, 1146
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 6 cut(s) 88, 340, 473, 548, 932, 1109
Bsp1720I GCTNAGC 1 cut(s) 718
Bsp19I CCATGG 1 cut(s) 778
BspACI CCGC 1 cut(s) 190
BspANI GGCC 4 cut(s) 55, 167, 948, 1036
BspCNI CTCAG 4 cut(s) 112, 731, 958, 1278
BspDI ATCGAT 1 cut(s) 978
BspLI GGNNCC 1 cut(s) 54
BspMAI CTGCAG 3 cut(s) 110, 943, 1123
BspOI GCTAGC 2 cut(s) 582, 1205
BspPI GGATC 4 cut(s) 335, 468, 556, 940
BspQI GCTCTTC 2 cut(s) 199, 1224
BspTI CTTAAG 1 cut(s) 598
BspTNI GGTCTC 2 cut(s) 674, 1146
BsrBI CCGCTC 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 934
BsrI ACTGG 6 cut(s) 120, 448, 505, 642, 877, 1212
BssECI CCNNGG 1 cut(s) 778
BssMI GATC 6 cut(s) 88, 340, 473, 548, 932, 1109
BssSI CACGAG 1 cut(s) 573
BssT1I CCWWGG 1 cut(s) 778
Bst2BI CACGAG 1 cut(s) 573
Bst2UI CCWGG 4 cut(s) 372, 589, 1056, 1074
Bst4CI ACNGT 1 cut(s) 868
Bst6I CTCTTC 3 cut(s) 199, 799, 1224
BstAFI CTTAAG 1 cut(s) 598
BstC8I GCNNGC 3 cut(s) 183, 580, 1203
BstDEI CTNAG 6 cut(s) 99, 608, 718, 726, 966, 1286
BstDSI CCRYGG 1 cut(s) 778
BstF5I GGATG 5 cut(s) 10, 125, 343, 1162, 1186
BstHHI GCGC 1 cut(s) 510
BstKTI GATC 6 cut(s) 91, 343, 476, 551, 935, 1112
BstMAI GTCTC 5 cut(s) 46, 433, 674, 963, 1146
BstMBI GATC 6 cut(s) 88, 340, 473, 548, 932, 1109
BstNI CCWGG 4 cut(s) 372, 589, 1056, 1074
BstSCI CCNGG 6 cut(s) 370, 476, 587, 1054, 1072, 1136
BstSFI CTRYAG 3 cut(s) 106, 939, 1119
BstV1I GCAGC 3 cut(s) 120, 709, 1334
BstV2I GAAGAC 1 cut(s) 136
BstX2I RGATCY 3 cut(s) 473, 548, 932
BstYI RGATCY 3 cut(s) 473, 548, 932
Bsu15I ATCGAT 1 cut(s) 978
BsuRI GGCC 4 cut(s) 55, 167, 948, 1036
BsuTUI ATCGAT 1 cut(s) 978
BtgI CCRYGG 1 cut(s) 778
BtsCI GGATG 5 cut(s) 10, 125, 343, 1162, 1186
BtsI GCAGTG 3 cut(s) 130, 334, 1090
BtsIMutI CAGTG 4 cut(s) 130, 334, 1090, 1205
Cac8I GCNNGC 3 cut(s) 183, 580, 1203
CaiI CAGNNNCTG 1 cut(s) 626
CfoI GCGC 1 cut(s) 510
Cfr13I GGNCC 2 cut(s) 53, 947
ClaI ATCGAT 1 cut(s) 978
CseI GACGC 3 cut(s) 655, 834, 1176
CsiI ACCWGGT 2 cut(s) 1054, 1072
Csp6I GTAC 1 cut(s) 1116
CviAII CATG 4 cut(s) 779, 1097, 1102, 1177
CviQI GTAC 1 cut(s) 1116
DdeI CTNAG 6 cut(s) 99, 608, 718, 726, 966, 1286
DpnI GATC 6 cut(s) 90, 342, 475, 550, 934, 1111
DpnII GATC 6 cut(s) 88, 340, 473, 548, 932, 1109
DraI TTTAAA 1 cut(s) 1029
EaeI YGGCCR 1 cut(s) 1034
Eam1104I CTCTTC 3 cut(s) 199, 799, 1224
EarI CTCTTC 3 cut(s) 199, 799, 1224
Eco130I CCWWGG 1 cut(s) 778
Eco31I GGTCTC 2 cut(s) 674, 1146
Eco57I CTGAAG 2 cut(s) 723, 1038
EcoO109I RGGNCCY 1 cut(s) 53
EcoRI GAATTC 1 cut(s) 136
EcoRII CCWGG 4 cut(s) 370, 587, 1054, 1072
EcoT14I CCWWGG 1 cut(s) 778
ErhI CCWWGG 1 cut(s) 778
FaeI CATG 4 cut(s) 782, 1100, 1105, 1180
FatI CATG 4 cut(s) 778, 1096, 1101, 1176
FauNDI CATATG 1 cut(s) 954
FblI GTMKAC 2 cut(s) 1051, 1069
Fnu4HI GCNGC 3 cut(s) 109, 723, 1323
FokI GGATG 5 cut(s) 17, 132, 350, 1169, 1193
Fsp4HI GCNGC 3 cut(s) 109, 723, 1323
FspBI CTAG 9 cut(s) 27, 45, 57, 231, 420, 579, 888, 993, 1202
FspI TGCGCA 1 cut(s) 509
GlaI GCGC 1 cut(s) 509
GluI GCNGC 3 cut(s) 109, 723, 1323
GsuI CTGGAG 1 cut(s) 1229
HaeIII GGCC 4 cut(s) 55, 167, 948, 1036
HapII CCGG 4 cut(s) 15, 267, 478, 1138
HgaI GACGC 3 cut(s) 655, 834, 1176
HhaI GCGC 1 cut(s) 510
Hin1II CATG 4 cut(s) 782, 1100, 1105, 1180
Hin6I GCGC 1 cut(s) 508
HinP1I GCGC 1 cut(s) 508
HincII GTYRAC 1 cut(s) 670
HindII GTYRAC 1 cut(s) 670
HinfI GANTC 9 cut(s) 311, 379, 401, 416, 659, 783, 797, 856, 1150
HpaII CCGG 4 cut(s) 15, 267, 478, 1138
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 4 cut(s) 670, 1052, 1070, 1094
Hpy188III TCNNGA 7 cut(s) 45, 258, 335, 344, 801, 1154, 1338
Hpy8I GTNNAC 4 cut(s) 670, 1052, 1070, 1094
Hpy99I CGWCG 2 cut(s) 850, 1170
HpyAV CCTTC 1 cut(s) 698
HpyCH4III ACNGT 1 cut(s) 868
HpyCH4IV ACGT 1 cut(s) 521
HpyCH4V TGCA 9 cut(s) 108, 123, 185, 282, 615, 941, 1121, 1190, 1322
HpyF3I CTNAG 6 cut(s) 99, 608, 718, 726, 966, 1286
HpySE526I ACGT 1 cut(s) 521
Hsp92II CATG 4 cut(s) 782, 1100, 1105, 1180
HspAI GCGC 1 cut(s) 508
Kzo9I GATC 6 cut(s) 88, 340, 473, 548, 932, 1109
LguI GCTCTTC 2 cut(s) 199, 1224
LmnI GCTCC 1 cut(s) 1027
Lsp1109I GCAGC 3 cut(s) 120, 709, 1334
LweI GCATC 2 cut(s) 110, 1095
MabI ACCWGGT 2 cut(s) 1054, 1072
MaeI CTAG 9 cut(s) 27, 45, 57, 231, 420, 579, 888, 993, 1202
MaeII ACGT 1 cut(s) 521
MaeIII GTNAC 3 cut(s) 358, 868, 875
MalI GATC 6 cut(s) 90, 342, 475, 550, 934, 1111
MbiI CCGCTC 1 cut(s) 192
MboI GATC 6 cut(s) 88, 340, 473, 548, 932, 1109
MfeI CAATTG 1 cut(s) 789
MflI RGATCY 3 cut(s) 473, 548, 932
MhlI GDGCHC 1 cut(s) 154
MlyI GAGTC 2 cut(s) 425, 850
MseI TTAA 3 cut(s) 599, 1028, 1299
MspA1I CMGCKG 1 cut(s) 722
MspCI CTTAAG 1 cut(s) 598
MspI CCGG 4 cut(s) 15, 267, 478, 1138
MspR9I CCNGG 6 cut(s) 372, 478, 589, 1056, 1074, 1138
MunI CAATTG 1 cut(s) 789
Mva1269I GAATGC 1 cut(s) 185
MvaI CCWGG 4 cut(s) 372, 589, 1056, 1074
NciI CCSGG 2 cut(s) 478, 1138
NcoI CCATGG 1 cut(s) 778
NdeI CATATG 1 cut(s) 954
NdeII GATC 6 cut(s) 88, 340, 473, 548, 932, 1109
NheI GCTAGC 2 cut(s) 578, 1201
NlaIII CATG 4 cut(s) 782, 1100, 1105, 1180
NlaIV GGNNCC 1 cut(s) 54
NmuCI GTSAC 2 cut(s) 358, 875
NsbI TGCGCA 1 cut(s) 509
PciSI GCTCTTC 2 cut(s) 199, 1224
PctI GAATGC 1 cut(s) 185
PfeI GAWTC 7 cut(s) 311, 379, 401, 659, 783, 797, 1150
PflMI CCANNNNNTGG 1 cut(s) 1079
PfoI TCCNGGA 1 cut(s) 476
PkrI GCNGC 3 cut(s) 110, 724, 1324
PleI GAGTC 2 cut(s) 424, 850
PpsI GAGTC 2 cut(s) 424, 850
Psp1406I AACGTT 1 cut(s) 521
Psp6I CCWGG 4 cut(s) 370, 587, 1054, 1072
PspGI CCWGG 4 cut(s) 370, 587, 1054, 1072
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 2 cut(s) 53, 947
PstI CTGCAG 3 cut(s) 110, 943, 1123
PstNI CAGNNNCTG 1 cut(s) 626
PsuI RGATCY 3 cut(s) 473, 548, 932
PvuII CAGCTG 1 cut(s) 722
RsaI GTAC 1 cut(s) 1117
RsaNI GTAC 1 cut(s) 1116
SapI GCTCTTC 2 cut(s) 199, 1224
SaqAI TTAA 3 cut(s) 599, 1028, 1299
SatI GCNGC 3 cut(s) 109, 723, 1323
Sau3AI GATC 6 cut(s) 88, 340, 473, 548, 932, 1109
Sau96I GGNCC 2 cut(s) 53, 947
SchI GAGTC 2 cut(s) 425, 850
ScrFI CCNGG 6 cut(s) 372, 478, 589, 1056, 1074, 1138
SduI GDGCHC 1 cut(s) 154
SexAI ACCWGGT 2 cut(s) 1054, 1072
SfaNI GCATC 2 cut(s) 110, 1095
SfcI CTRYAG 3 cut(s) 106, 939, 1119
SmlI CTYRAG 2 cut(s) 256, 598
SmoI CTYRAG 2 cut(s) 256, 598
SsiI CCGC 1 cut(s) 190
SspMI CTAG 9 cut(s) 27, 45, 57, 231, 420, 579, 888, 993, 1202
StyD4I CCNGG 6 cut(s) 370, 476, 587, 1054, 1072, 1136
StyI CCWWGG 1 cut(s) 778
TaaI ACNGT 1 cut(s) 868
TaiI ACGT 1 cut(s) 524
TaqI TCGA 3 cut(s) 662, 773, 978
TfiI GAWTC 7 cut(s) 311, 379, 401, 659, 783, 797, 1150
Tru1I TTAA 3 cut(s) 599, 1028, 1299
Tru9I TTAA 3 cut(s) 599, 1028, 1299
TscAI CASTG 4 cut(s) 130, 334, 1090, 1212
TseFI GTSAC 2 cut(s) 358, 875
TseI GCWGC 3 cut(s) 108, 722, 1322
Tsp45I GTSAC 2 cut(s) 358, 875
TspDTI ATGAA 7 cut(s) 303, 639, 755, 987, 998, 1163, 1242
TspGWI ACGGA 1 cut(s) 627
TspRI CASTG 4 cut(s) 130, 334, 1090, 1212
Van91I CCANNNNNTGG 1 cut(s) 1079
Vha464I CTTAAG 1 cut(s) 598
XapI RAATTY 4 cut(s) 136, 484, 696, 1039
XbaI TCTAGA 1 cut(s) 44
XmiI GTMKAC 2 cut(s) 1051, 1069
XspI CTAG 9 cut(s) 27, 45, 57, 231, 420, 579, 888, 993, 1202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.