Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011847

Physical Location & Seq

Genomic Coordinates Forward (+)

28109150 .. 28111588

Gene Structure 2439 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g38990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGAAGATCCAGTGTGACGTGTGCAACAAGGACGAAGCGTCGGTGTTCTGCACCGCCGACGAGGCTGCTCTCTGCGACGGCTGCGACCACCGTGTCCACCATGCCAATAAGCTCGCCTCCAAACACCAGCGCTTCTCCCTCATCCACCCCTCCTCTTCCAAACTCTCCCCTCTCTGCGATATCTGTCAGGAGAGACGAGCTTTCTTGTTCTGTCAGCAGGACAGAGCAATCTTATGTAGAGAGTGTGACGTTCCGATTCACTCTGCAAACGAACACACACAGAAGCATAATCGCTTTCTTTTCACAGGGGTCAAGCTCTCTGCTACCTCTACAGTTTACACATCTACTGAGTCTGCTGCGGTTACTGATCCCAAGCCTCAGCCTTTGATCAATAAGAAGCAGCCTGTTCCAGTTTCCTCATCTATTTCAAATCCCTTTTCAGTTCCCAAGATTTCAACTACTACTACTACTACTACTTCAGTTCCCAAGATCTCAACTAGTACTAAAAGTGGTGCAAGTTTGATACCAAATGATGGGGTTGGATCAGTGAGTAGCATATCAGAGTATTTGACTGAGACGCTTCCGGGTTGGCACGTTGAGGACCTTCTTGATATTTCGTCTAACCATCCCTTTGGTTTCTGTAAGGCTGACAATGAAGCTTTACCCTATTTCGATGATGATATCCAAAGCAATCTCAGCTCTTTCTCGTCACAGAACCCAGGGATTTGGGTCCCTCAAGCATCAAATCCTTCTCTGCAACATTCACAAATGGGGTTCAAAGAGACCACAAAGGAGGCTGCTACAAATATGAACATGATCAAAGCCAACTATAACAGCAATCACATCTCCAATTACAGATCAATGTGGAACGTCGACGATAGCTTCACAGTTCCTCAGATTAGTCCTCCATCTGTTGGCTCCAAGAGGTATAGACCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000989 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009641 GO:0009791 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

314

Amino Acids

34.46

Weight (kDa)

6.62

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	57 - 93	1.2e-06	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75540
fragaria_vesca	FvH4_2g38990
malus_domestica	MD08G1021000.v1.1 MD15G1018700.v1.1 MD15G1019000.v1.1
prunus_persica	Prupe.1G371100_v2.0.a1 Prupe.1G371100_v2.0.a1
pyrus_communis	pycom08g01660 pycom15g01580
rosa_chinensis	RchiOBHm_Chr6g0302091
rosa_laevigata	RLG00000011196
rosa_multiflora	Rmu_ssc0000160.1_g000008
rosa_roxburghii	Rroxscaffold_7G00166090
rosa_rugosa	Rorug06G0312300
rosa_samantha	Rh6AG424600 Rh6BG477800 Rh6CG437500 Rh6DG424500
rosa_wichuraiana	Rw6G036770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccB7I	CCANNNNNTGG	2 cut(s)	533, 914
AccI	GTMKAC	1 cut(s)	873
AciI	CCGC	2 cut(s)	54, 359
AclWI	GGATC	2 cut(s)	362, 550
AcuI	CTGAAG	1 cut(s)	462
AfaI	GTAC	1 cut(s)	502
AfeI	AGCGCT	1 cut(s)	131
AfiI	CCNNNNNNNGG	2 cut(s)	533, 914
AflIII	ACRYGT	1 cut(s)	18
AgsI	TTSAA	3 cut(s)	429, 456, 778
AhdI	GACNNNNNGTC	1 cut(s)	37
AhlI	ACTAGT	1 cut(s)	497
AjiI	CACGTC	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	718
AluBI	AGCT	6 cut(s)	112, 200, 316, 659, 699, 882
AluI	AGCT	6 cut(s)	112, 200, 316, 659, 699, 882
Alw26I	GTCTC	3 cut(s)	187, 569, 776
AlwI	GGATC	2 cut(s)	362, 550
Aor51HI	AGCGCT	1 cut(s)	131
ApeKI	GCWGC	5 cut(s)	65, 81, 356, 400, 797
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	2 cut(s)	601, 730
AsuC2I	CCSGG	1 cut(s)	585
AvaII	GGWCC	2 cut(s)	601, 730
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	5 cut(s)	52, 68, 343, 412, 784
BccI	CCATC	3 cut(s)	527, 633, 916
BceAI	ACGGC	1 cut(s)	94
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BciT130I	CCWGG	1 cut(s)	720
BclI	TGATCA	2 cut(s)	387, 816
BcnI	CCSGG	1 cut(s)	585
BcoDI	GTCTC	3 cut(s)	187, 569, 776
BcuI	ACTAGT	1 cut(s)	497
BfaI	CTAG	1 cut(s)	498
BfmI	CTRYAG	1 cut(s)	330
BfoI	RGCGCY	1 cut(s)	133
BglI	GCCNNNNNGGC	1 cut(s)	62
BglII	AGATCT	1 cut(s)	489
BisI	GCNGC	5 cut(s)	66, 82, 357, 401, 798
BlsI	GCNGC	5 cut(s)	67, 83, 358, 402, 799
BmcAI	AGTACT	1 cut(s)	502
Bme1390I	CCNGG	2 cut(s)	585, 720
Bme18I	GGWCC	2 cut(s)	601, 730
BmeRI	GACNNNNNGTC	1 cut(s)	37
BmgBI	CACGTC	1 cut(s)	19
BmgT120I	GGNCC	2 cut(s)	601, 730
BmiI	GGNNCC	3 cut(s)	731, 732, 919
BmrFI	CCNGG	2 cut(s)	585, 720
BmsI	GCATC	1 cut(s)	749
Bpu10I	CCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	720
BpuMI	CCSGG	1 cut(s)	585
BsaI	GGTCTC	1 cut(s)	776
BsaJI	CCNNGG	2 cut(s)	718, 719
Bsc4I	CCNNNNNNNGG	2 cut(s)	533, 914
Bse1I	ACTGG	2 cut(s)	10, 410
BseBI	CCWGG	1 cut(s)	720
BseDI	CCNNGG	2 cut(s)	718, 719
BseGI	GGATG	2 cut(s)	141, 625
BseLI	CCNNNNNNNGG	2 cut(s)	533, 914
BseMII	CTCAG	5 cut(s)	339, 392, 564, 709, 908
BseNI	ACTGG	2 cut(s)	10, 410
BseRI	GAGGAG	1 cut(s)	142
BseXI	GCAGC	5 cut(s)	52, 68, 343, 412, 784
BsgI	GTGCAG	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	584
BslFI	GGGAC	1 cut(s)	716
BslI	CCNNNNNNNGG	2 cut(s)	533, 914
BsmAI	GTCTC	3 cut(s)	187, 569, 776
BsmBI	CGTCTC	2 cut(s)	187, 569
BsmFI	GGGAC	1 cut(s)	716
Bso31I	GGTCTC	1 cut(s)	776
Bsp143I	GATC	7 cut(s)	6, 367, 387, 489, 542, 816, 857
BspACI	CCGC	2 cut(s)	54, 359
BspCNI	CTCAG	5 cut(s)	340, 391, 565, 708, 907
BspLI	GGNNCC	3 cut(s)	731, 732, 919
BspPI	GGATC	2 cut(s)	362, 550
BspTNI	GGTCTC	1 cut(s)	776
BsrI	ACTGG	2 cut(s)	10, 410
BssECI	CCNNGG	2 cut(s)	718, 719
BssMI	GATC	7 cut(s)	6, 367, 387, 489, 542, 816, 857
Bst2UI	CCWGG	1 cut(s)	720
Bst4CI	ACNGT	3 cut(s)	92, 334, 889
Bst6I	CTCTTC	1 cut(s)	160
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	5 cut(s)	348, 378, 573, 695, 894
BstF5I	GGATG	2 cut(s)	141, 625
BstH2I	RGCGCY	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	7 cut(s)	9, 370, 390, 492, 545, 819, 860
BstMAI	GTCTC	3 cut(s)	187, 569, 776
BstMBI	GATC	7 cut(s)	6, 367, 387, 489, 542, 816, 857
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 81, 696
BstNI	CCWGG	1 cut(s)	720
BstSCI	CCNGG	2 cut(s)	583, 718
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	5 cut(s)	52, 68, 343, 412, 784
BstX2I	RGATCY	2 cut(s)	6, 489
BstXI	CCANNNNNNTGG	2 cut(s)	632, 726
BstYI	RGATCY	2 cut(s)	6, 489
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	2 cut(s)	141, 625
BtsIMutI	CAGTG	2 cut(s)	17, 552
Cac8I	GCNNGC	1 cut(s)	114
CfoI	GCGC	1 cut(s)	132
Cfr13I	GGNCC	2 cut(s)	601, 730
CseI	GACGC	2 cut(s)	27, 586
Csp6I	GTAC	1 cut(s)	501
CviAII	CATG	2 cut(s)	101, 814
CviQI	GTAC	1 cut(s)	501
DdeI	CTNAG	5 cut(s)	348, 378, 573, 695, 894
DpnI	GATC	7 cut(s)	8, 369, 389, 491, 544, 818, 859
DpnII	GATC	7 cut(s)	6, 367, 387, 489, 542, 816, 857
DrdI	GACNNNNNNGTC	1 cut(s)	92
DriI	GACNNNNNGTC	1 cut(s)	37
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	160
Eam1105I	GACNNNNNGTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	160
Eco31I	GGTCTC	1 cut(s)	776
Eco32I	GATATC	2 cut(s)	181, 682
Eco47I	GGWCC	2 cut(s)	601, 730
Eco47III	AGCGCT	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	462
EcoO109I	RGGNCCY	2 cut(s)	601, 730
EcoRII	CCWGG	1 cut(s)	718
EcoRV	GATATC	2 cut(s)	181, 682
Esp3I	CGTCTC	2 cut(s)	187, 569
FaeI	CATG	2 cut(s)	104, 817
FaiI	YATR	8 cut(s)	102, 235, 288, 557, 809, 815, 831, 930
FaqI	GGGAC	1 cut(s)	716
FatI	CATG	2 cut(s)	100, 813
FbaI	TGATCA	2 cut(s)	387, 816
FblI	GTMKAC	1 cut(s)	873
Fnu4HI	GCNGC	5 cut(s)	66, 82, 357, 401, 798
FokI	GGATG	2 cut(s)	128, 612
Fsp4HI	GCNGC	5 cut(s)	66, 82, 357, 401, 798
FspBI	CTAG	1 cut(s)	498
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	5 cut(s)	66, 82, 357, 401, 798
HaeII	RGCGCY	1 cut(s)	133
HapII	CCGG	1 cut(s)	584
HgaI	GACGC	2 cut(s)	27, 586
HhaI	GCGC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	104, 817
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HindIII	AAGCTT	1 cut(s)	657
HinfI	GANTC	2 cut(s)	256, 350
HpaII	CCGG	1 cut(s)	584
Hpy166II	GTNNAC	3 cut(s)	97, 337, 874
Hpy188I	TCNGA	3 cut(s)	255, 562, 897
Hpy188III	TCNNGA	2 cut(s)	188, 608
Hpy8I	GTNNAC	3 cut(s)	97, 337, 874
Hpy99I	CGWCG	5 cut(s)	43, 62, 80, 875, 878
HpyAV	CCTTC	2 cut(s)	614, 759
HpyCH4III	ACNGT	3 cut(s)	92, 334, 889
HpyCH4IV	ACGT	4 cut(s)	18, 249, 594, 870
HpyCH4V	TGCA	5 cut(s)	24, 51, 266, 515, 757
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 81, 696
HpyF3I	CTNAG	5 cut(s)	348, 378, 573, 695, 894
HpySE526I	ACGT	4 cut(s)	18, 249, 594, 870
Hsp92II	CATG	2 cut(s)	104, 817
HspAI	GCGC	1 cut(s)	130
KflI	GGGWCCC	1 cut(s)	730
Ksp22I	TGATCA	2 cut(s)	387, 816
Kzo9I	GATC	7 cut(s)	6, 367, 387, 489, 542, 816, 857
LmnI	GCTCC	1 cut(s)	923
Lsp1109I	GCAGC	5 cut(s)	52, 68, 343, 412, 784
LweI	GCATC	1 cut(s)	749
MaeI	CTAG	1 cut(s)	498
MaeII	ACGT	4 cut(s)	18, 249, 594, 870
MaeIII	GTNAC	4 cut(s)	14, 245, 361, 708
MalI	GATC	7 cut(s)	8, 369, 389, 491, 544, 818, 859
MboI	GATC	7 cut(s)	6, 367, 387, 489, 542, 816, 857
MboII	GAAGA	2 cut(s)	16, 147
MflI	RGATCY	2 cut(s)	6, 489
MluCI	AATT	1 cut(s)	850
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	1 cut(s)	520
MspI	CCGG	1 cut(s)	584
MspR9I	CCNGG	2 cut(s)	585, 720
MvaI	CCWGG	1 cut(s)	720
MwoI	GCNNNNNNNGC	3 cut(s)	62, 81, 696
NciI	CCSGG	1 cut(s)	585
NdeII	GATC	7 cut(s)	6, 367, 387, 489, 542, 816, 857
NlaIII	CATG	2 cut(s)	104, 817
NlaIV	GGNNCC	3 cut(s)	731, 732, 919
NmuCI	GTSAC	3 cut(s)	14, 245, 708
PasI	CCCWGGG	1 cut(s)	719
PfeI	GAWTC	1 cut(s)	256
PflMI	CCANNNNNTGG	2 cut(s)	533, 914
PkrI	GCNGC	5 cut(s)	67, 83, 358, 402, 799
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PpuMI	RGGWCCY	2 cut(s)	601, 730
Psp5II	RGGWCCY	2 cut(s)	601, 730
Psp6I	CCWGG	1 cut(s)	718
PspGI	CCWGG	1 cut(s)	718
PspN4I	GGNNCC	3 cut(s)	731, 732, 919
PspPI	GGNCC	2 cut(s)	601, 730
PspPPI	RGGWCCY	2 cut(s)	601, 730
PsuI	RGATCY	2 cut(s)	6, 489
RsaI	GTAC	1 cut(s)	502
RsaNI	GTAC	1 cut(s)	501
SalI	GTCGAC	1 cut(s)	872
SatI	GCNGC	5 cut(s)	66, 82, 357, 401, 798
Sau3AI	GATC	7 cut(s)	6, 367, 387, 489, 542, 816, 857
Sau96I	GGNCC	2 cut(s)	601, 730
ScaI	AGTACT	1 cut(s)	502
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	2 cut(s)	585, 720
SfaNI	GCATC	1 cut(s)	749
SfcI	CTRYAG	1 cut(s)	330
SgrDI	CGTCGACG	1 cut(s)	872
SinI	GGWCC	2 cut(s)	601, 730
SmlI	CTYRAG	1 cut(s)	735
SmoI	CTYRAG	1 cut(s)	735
SpeI	ACTAGT	1 cut(s)	497
Sse9I	AATT	1 cut(s)	850
SsiI	CCGC	2 cut(s)	54, 359
SspMI	CTAG	1 cut(s)	498
StyD4I	CCNGG	2 cut(s)	583, 718
TaaI	ACNGT	3 cut(s)	92, 334, 889
TaiI	ACGT	4 cut(s)	21, 252, 597, 873
TaqI	TCGA	2 cut(s)	672, 873
TasI	AATT	1 cut(s)	850
TatI	WGTACW	1 cut(s)	500
TfiI	GAWTC	1 cut(s)	256
TscAI	CASTG	2 cut(s)	17, 552
TseFI	GTSAC	3 cut(s)	14, 245, 708
TseI	GCWGC	5 cut(s)	65, 81, 356, 400, 797
Tsp45I	GTSAC	3 cut(s)	14, 245, 708
TspDTI	ATGAA	3 cut(s)	17, 669, 824
TspRI	CASTG	2 cut(s)	17, 552
Van91I	CCANNNNNTGG	2 cut(s)	533, 914
VpaK11BI	GGWCC	2 cut(s)	601, 730
XmiI	GTMKAC	1 cut(s)	873
XspI	CTAG	1 cut(s)	498
ZrmI	AGTACT	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.