RchiOBHm_Chr6g0302091

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011847
Physical Location & Seq
Forward (+)
62289300 .. 62290864
1565 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27136

Sequence Viewer

Length: 894 bp
ATGAAGATCCAGTGTGACGTGTGCAACAAGGACGACGCGTCGGTGTTCTGCACCGCCGACGAGGCAGCTCTCTGCGACGGCTGCGACCACCGTGTCCACCACGCCAACAAGCTCGCGTCCAAACACCAACGCTTCTCGCTCATCCACCCCTCCTCTTCTAAAGAGTCCCCTCTCTGCGACATCTGTCAGGAGAGACGAGCTTTCTTGTTCTGTCAGCAGGACAGAGCAATTTTATGTAGAGAGTGTGACGGTTCGATTCACTCTGCAAACGAACATACTCAGAAGCATAATCGGTATCTTTTCACAGGGGTCAAGCTCTCTGCTACGTCAACAGTTTACGCATCTTCTGATTCTGCTGCGGCGGTTACTGATCTCAAGCCTCAGCCTTTGATCAATAAGAAGCCTATTTCAGTCTCCTCTGCTATTTCAAGTCCACCTTCAGTTCCTAAGATTTCAACTAGTACTAGTAACAGCACTAAAAATGGTGGAAATTTGCTACCATACGATGGGGTTGGATCAATGAGTAGCATATCAGAGTACTTGACCGAGACTCTTCCGGGTTGGCACGTTGAAGACCTTCTTGATTTTTCGTCTAACCATCCCTTTGGTTTCTGTAAGGCTGACAATGGAGCTACCTTTTTCGATGATGATATCGAAAGCAATCTGAGCTCTTTCTCGTCAGAAAACATGGGGATTTGGGTCCCTCAAGCACCAAATCCTTCTCTGCAACATTCACAAATGGGGTTCAAAGAGACCACAAAGGAGGCTACAAATATGAACACGATCAAAGCCAACTATAACAACAATTACAGATCACTGTGGAACGACGATGGCTTCACAGTTCCTCAGATTAGTCCTCCATCTGTTGGCTCCAAGAGGTCTAGGCCTTTTTGA

Protein Analysis

297

Amino Acids

32.57

Weight (kDa)

6.11

Isoelectric Point (pI)

55.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 55 - 93 1.1e-06 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011847)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75540
fragaria_vesca FvH4_2g38990
malus_domestica MD08G1021000.v1.1 MD15G1018700.v1.1 MD15G1019000.v1.1
prunus_persica Prupe.1G371100_v2.0.a1 Prupe.1G371100_v2.0.a1
pyrus_communis pycom08g01660 pycom15g01580
rosa_chinensis RchiOBHm_Chr6g0302091
rosa_laevigata RLG00000011196
rosa_multiflora Rmu_ssc0000160.1_g000008
rosa_roxburghii Rroxscaffold_7G00166090
rosa_rugosa Rorug06G0312300
rosa_samantha Rh6AG424600 Rh6BG477800 Rh6CG437500 Rh6DG424500
rosa_wichuraiana Rw6G036770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
AccB7I CCANNNNNTGG 2 cut(s) 506, 866
AccII CGCG 2 cut(s) 38, 116
AciI CCGC 3 cut(s) 54, 359, 362
AclWI GGATC 1 cut(s) 523
AcsI RAATTY 1 cut(s) 490
AcuI CTGAAG 1 cut(s) 423
AfaI GTAC 2 cut(s) 463, 539
AfiI CCNNNNNNNGG 2 cut(s) 506, 866
AflIII ACRYGT 2 cut(s) 18, 36
AgsI TTSAA 4 cut(s) 429, 456, 572, 748
AhdI GACNNNNNGTC 1 cut(s) 37
AhlI ACTAGT 2 cut(s) 458, 464
AjiI CACGTC 1 cut(s) 19
AluBI AGCT 6 cut(s) 68, 112, 200, 316, 632, 669
AluI AGCT 6 cut(s) 68, 112, 200, 316, 632, 669
Alw21I GWGCWC 1 cut(s) 671
Alw26I GTCTC 4 cut(s) 187, 418, 542, 746
AlwI GGATC 1 cut(s) 523
AoxI GGCC 1 cut(s) 884
ApeKI GCWGC 3 cut(s) 65, 81, 356
ApoI RAATTY 1 cut(s) 490
Asp700I GAANNNNTTC 1 cut(s) 576
AspS9I GGNCC 1 cut(s) 700
AsuC2I CCSGG 1 cut(s) 558
AvaII GGWCC 1 cut(s) 700
BanII GRGCYC 1 cut(s) 671
BbsI GAAGAC 1 cut(s) 579
Bbv12I GWGCWC 1 cut(s) 671
BbvCI CCTCAGC 1 cut(s) 381
BbvI GCAGC 3 cut(s) 68, 77, 343
BccI CCATC 4 cut(s) 500, 606, 824, 868
BceAI ACGGC 1 cut(s) 94
BclI TGATCA 1 cut(s) 390
BcnI CCSGG 1 cut(s) 558
BcoDI GTCTC 4 cut(s) 187, 418, 542, 746
BcuI ACTAGT 2 cut(s) 458, 464
BfaI CTAG 3 cut(s) 459, 465, 882
BglI GCCNNNNNGGC 1 cut(s) 62
BisI GCNGC 4 cut(s) 66, 82, 357, 360
BlsI GCNGC 4 cut(s) 67, 83, 358, 361
BmcAI AGTACT 2 cut(s) 463, 539
Bme1390I CCNGG 1 cut(s) 558
Bme18I GGWCC 1 cut(s) 700
BmeRI GACNNNNNGTC 1 cut(s) 37
BmgBI CACGTC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 700
BmiI GGNNCC 3 cut(s) 701, 702, 871
BmrFI CCNGG 1 cut(s) 558
BmsI GCATC 1 cut(s) 350
BoxI GACNNNNGTC 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 579
Bpu10I CCTNAGC 1 cut(s) 381
BpuEI CTTGAG 2 cut(s) 359, 690
BpuMI CCSGG 1 cut(s) 558
BsaI GGTCTC 1 cut(s) 746
Bsc4I CCNNNNNNNGG 2 cut(s) 506, 866
Bse1I ACTGG 1 cut(s) 10
BseGI GGATG 2 cut(s) 141, 598
BseLI CCNNNNNNNGG 2 cut(s) 506, 866
BseMII CTCAG 4 cut(s) 293, 395, 656, 860
BseNI ACTGG 1 cut(s) 10
BseRI GAGGAG 2 cut(s) 142, 406
BseXI GCAGC 3 cut(s) 68, 77, 343
BsgI GTGCAG 1 cut(s) 34
Bsh1236I CGCG 2 cut(s) 38, 116
BshFI GGCC 1 cut(s) 886
BsiHKAI GWGCWC 1 cut(s) 671
BsiSI CCGG 1 cut(s) 557
BslFI GGGAC 2 cut(s) 151, 686
BslI CCNNNNNNNGG 2 cut(s) 506, 866
BsmAI GTCTC 4 cut(s) 187, 418, 542, 746
BsmBI CGTCTC 1 cut(s) 187
BsmFI GGGAC 2 cut(s) 151, 686
BsnI GGCC 1 cut(s) 886
Bso31I GGTCTC 1 cut(s) 746
Bsp1286I GDGCHC 1 cut(s) 671
Bsp143I GATC 6 cut(s) 6, 370, 390, 515, 783, 812
BspACI CCGC 3 cut(s) 54, 359, 362
BspANI GGCC 1 cut(s) 886
BspCNI CTCAG 4 cut(s) 292, 394, 657, 859
BspFNI CGCG 2 cut(s) 38, 116
BspLI GGNNCC 3 cut(s) 701, 702, 871
BspPI GGATC 1 cut(s) 523
BspTNI GGTCTC 1 cut(s) 746
BsrI ACTGG 1 cut(s) 10
BssMI GATC 6 cut(s) 6, 370, 390, 515, 783, 812
Bst4CI ACNGT 5 cut(s) 92, 251, 334, 819, 841
Bst6I CTCTTC 2 cut(s) 160, 558
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 5 cut(s) 279, 381, 447, 665, 846
BstF5I GGATG 2 cut(s) 141, 598
BstFNI CGCG 2 cut(s) 38, 116
BstKTI GATC 6 cut(s) 9, 373, 393, 518, 786, 815
BstMAI GTCTC 4 cut(s) 187, 418, 542, 746
BstMBI GATC 6 cut(s) 6, 370, 390, 515, 783, 812
BstMWI GCNNNNNNNGC 3 cut(s) 62, 81, 666
BstPAI GACNNNNGTC 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 556
BstUI CGCG 2 cut(s) 38, 116
BstV1I GCAGC 3 cut(s) 68, 77, 343
BstV2I GAAGAC 1 cut(s) 579
BstX2I RGATCY 1 cut(s) 6
BstXI CCANNNNNNTGG 1 cut(s) 605
BstYI RGATCY 1 cut(s) 6
BsuRI GGCC 1 cut(s) 886
BtrI CACGTC 1 cut(s) 19
BtsCI GGATG 2 cut(s) 141, 598
BtsIMutI CAGTG 2 cut(s) 17, 815
Cac8I GCNNGC 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 700
CseI GACGC 3 cut(s) 27, 44, 105
Csp6I GTAC 2 cut(s) 462, 538
CviAII CATG 1 cut(s) 688
CviQI GTAC 2 cut(s) 462, 538
DdeI CTNAG 5 cut(s) 279, 381, 447, 665, 846
DpnI GATC 6 cut(s) 8, 372, 392, 517, 785, 814
DpnII GATC 6 cut(s) 6, 370, 390, 515, 783, 812
DrdI GACNNNNNNGTC 1 cut(s) 92
DriI GACNNNNNGTC 1 cut(s) 37
DseDI GACNNNNNNGTC 1 cut(s) 92
Eam1104I CTCTTC 2 cut(s) 160, 558
Eam1105I GACNNNNNGTC 1 cut(s) 37
EarI CTCTTC 2 cut(s) 160, 558
Ecl136II GAGCTC 1 cut(s) 669
Eco147I AGGCCT 1 cut(s) 886
Eco24I GRGCYC 1 cut(s) 671
Eco31I GGTCTC 1 cut(s) 746
Eco32I GATATC 1 cut(s) 652
Eco47I GGWCC 1 cut(s) 700
Eco53kI GAGCTC 1 cut(s) 669
Eco57I CTGAAG 1 cut(s) 423
EcoICRI GAGCTC 1 cut(s) 669
EcoO109I RGGNCCY 1 cut(s) 700
EcoRV GATATC 1 cut(s) 652
EcoT38I GRGCYC 1 cut(s) 671
Esp3I CGTCTC 1 cut(s) 187
FaeI CATG 1 cut(s) 691
FaiI YATR 8 cut(s) 235, 276, 288, 502, 530, 689, 776, 798
FalI AAGNNNNNCTT 4 cut(s) 421, 453, 564, 596
FaqI GGGAC 2 cut(s) 151, 686
FatI CATG 1 cut(s) 687
FbaI TGATCA 1 cut(s) 390
Fnu4HI GCNGC 4 cut(s) 66, 82, 357, 360
FokI GGATG 2 cut(s) 128, 585
FriOI GRGCYC 1 cut(s) 671
Fsp4HI GCNGC 4 cut(s) 66, 82, 357, 360
FspBI CTAG 3 cut(s) 459, 465, 882
GluI GCNGC 4 cut(s) 66, 82, 357, 360
HaeIII GGCC 1 cut(s) 886
HapII CCGG 1 cut(s) 557
HgaI GACGC 3 cut(s) 27, 44, 105
Hin1II CATG 1 cut(s) 691
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HinfI GANTC 4 cut(s) 164, 256, 350, 550
HpaII CCGG 1 cut(s) 557
Hpy166II GTNNAC 4 cut(s) 97, 330, 337, 434
Hpy188I TCNGA 6 cut(s) 282, 349, 535, 666, 682, 849
Hpy188III TCNNGA 2 cut(s) 188, 581
Hpy8I GTNNAC 4 cut(s) 97, 330, 337, 434
Hpy99I CGWCG 5 cut(s) 38, 43, 62, 80, 830
HpyAV CCTTC 3 cut(s) 447, 587, 729
HpyCH4III ACNGT 5 cut(s) 92, 251, 334, 819, 841
HpyCH4IV ACGT 3 cut(s) 18, 326, 567
HpyCH4V TGCA 4 cut(s) 24, 51, 266, 727
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 81, 666
HpyF3I CTNAG 5 cut(s) 279, 381, 447, 665, 846
HpySE526I ACGT 3 cut(s) 18, 326, 567
Hsp92II CATG 1 cut(s) 691
KflI GGGWCCC 1 cut(s) 700
Ksp22I TGATCA 1 cut(s) 390
Kzo9I GATC 6 cut(s) 6, 370, 390, 515, 783, 812
LmnI GCTCC 2 cut(s) 629, 875
LpnPI CCDG 5 cut(s) 23, 173, 203, 291, 570
Lsp1109I GCAGC 3 cut(s) 68, 77, 343
LweI GCATC 1 cut(s) 350
MaeI CTAG 3 cut(s) 459, 465, 882
MaeII ACGT 3 cut(s) 18, 326, 567
MaeIII GTNAC 4 cut(s) 14, 245, 364, 467
MalI GATC 6 cut(s) 8, 372, 392, 517, 785, 814
MboI GATC 6 cut(s) 6, 370, 390, 515, 783, 812
MboII GAAGA 5 cut(s) 16, 147, 336, 545, 584
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 671
MluCI AATT 3 cut(s) 228, 490, 805
MluI ACGCGT 1 cut(s) 36
MlyI GAGTC 2 cut(s) 173, 544
MmeI TCCRAC 1 cut(s) 493
MroXI GAANNNNTTC 1 cut(s) 576
MspI CCGG 1 cut(s) 557
MspR9I CCNGG 1 cut(s) 558
MvnI CGCG 2 cut(s) 38, 116
MwoI GCNNNNNNNGC 3 cut(s) 62, 81, 666
NciI CCSGG 1 cut(s) 558
NdeII GATC 6 cut(s) 6, 370, 390, 515, 783, 812
NlaIII CATG 1 cut(s) 691
NlaIV GGNNCC 3 cut(s) 701, 702, 871
NmuCI GTSAC 2 cut(s) 14, 245
PceI AGGCCT 1 cut(s) 886
PdmI GAANNNNTTC 1 cut(s) 576
PfeI GAWTC 2 cut(s) 256, 350
PflMI CCANNNNNTGG 2 cut(s) 506, 866
PkrI GCNGC 4 cut(s) 67, 83, 358, 361
PleI GAGTC 2 cut(s) 172, 544
PpsI GAGTC 2 cut(s) 172, 544
PpuMI RGGWCCY 1 cut(s) 700
PshAI GACNNNNGTC 1 cut(s) 183
Psp124BI GAGCTC 1 cut(s) 671
Psp5II RGGWCCY 1 cut(s) 700
PspN4I GGNNCC 3 cut(s) 701, 702, 871
PspPI GGNCC 1 cut(s) 700
PspPPI RGGWCCY 1 cut(s) 700
PsuI RGATCY 1 cut(s) 6
RsaI GTAC 2 cut(s) 463, 539
RsaNI GTAC 2 cut(s) 462, 538
SacI GAGCTC 1 cut(s) 671
SatI GCNGC 4 cut(s) 66, 82, 357, 360
Sau3AI GATC 6 cut(s) 6, 370, 390, 515, 783, 812
Sau96I GGNCC 1 cut(s) 700
ScaI AGTACT 2 cut(s) 463, 539
SchI GAGTC 2 cut(s) 173, 544
ScrFI CCNGG 1 cut(s) 558
SduI GDGCHC 1 cut(s) 671
SfaNI GCATC 1 cut(s) 350
SinI GGWCC 1 cut(s) 700
SmlI CTYRAG 2 cut(s) 374, 705
SmoI CTYRAG 2 cut(s) 374, 705
SpeI ACTAGT 2 cut(s) 458, 464
Sse9I AATT 3 cut(s) 228, 490, 805
SseBI AGGCCT 1 cut(s) 886
SsiI CCGC 3 cut(s) 54, 359, 362
SspMI CTAG 3 cut(s) 459, 465, 882
SstI GAGCTC 1 cut(s) 671
StuI AGGCCT 1 cut(s) 886
StyD4I CCNGG 1 cut(s) 556
TaaI ACNGT 5 cut(s) 92, 251, 334, 819, 841
TaiI ACGT 3 cut(s) 21, 329, 570
TaqI TCGA 3 cut(s) 254, 642, 654
TaqII GACCGA 1 cut(s) 560
TasI AATT 3 cut(s) 228, 490, 805
TatI WGTACW 2 cut(s) 461, 537
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 2 cut(s) 256, 350
TscAI CASTG 2 cut(s) 17, 822
TseFI GTSAC 2 cut(s) 14, 245
TseI GCWGC 3 cut(s) 65, 81, 356
Tsp45I GTSAC 2 cut(s) 14, 245
TspDTI ATGAA 2 cut(s) 17, 791
TspRI CASTG 2 cut(s) 17, 822
Van91I CCANNNNNTGG 2 cut(s) 506, 866
VpaK11BI GGWCC 1 cut(s) 700
XapI RAATTY 1 cut(s) 490
XmnI GAANNNNTTC 1 cut(s) 576
XspI CTAG 3 cut(s) 459, 465, 882
ZrmI AGTACT 2 cut(s) 463, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.