Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0011847

Physical Location & Seq

Genomic Coordinates Forward (+)

60559697 .. 60561667

Gene Structure 1971 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG424500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGAAGATCCAGTGTGACGTGTGCAACAAGGACGACGCGTCGGTGTTCTGCACCGCCGACGAGGCAGCTCTCTGCGACGGCTGCGACCACCGTGTCCACCACGCCAACAAGCTCGCGTCCAAACACCAACGCTTCTCGCTCATCCACCCCTCCTCTTCTAAAGAGTCCCCTCTCTGCGACATCTGTCAGGAGAGACAAGCTTTCTTGTTCTGTCAGCAGGACAGAGCAATTTTATGTAGAGAGTGTGACGGTTCGATTCACTCTGCAAACGAACATACTCAGAAGCATAATCGGTATCTTTTCACAGGGGTCAAGCTCTCTGCTACCTCAACAGTTTACGCATCTTCTGATTCTGCTGCGGTTACTGATCTCAAGCCTCAGCCTTTGATCAATAAGAAGCCTATTTCAGTCTCCTCTGCTATTTCAAGTCCACCTTCAGTTCCTAAGATTTCAACTAGTACTAGTAACAGCACTAAAAATGGTGGAAATTTGCTACCATACGATGGGGTTGGATCAATGAGTAGCATATCAGAGTACTTGACCGAGACTCTTCCGGGTTGGCACGTTGAAGACCTTCTTGATTTTTCGTCTAACCATCCCTTTGGTTTCTGTAAGGCTGACAATGGAGCTTTGCCCTTTTTCGATGATGATATCGAAAGCAATCTGAGCTCTTTCTCGTCAGAAAACATGGGGATTTGGGTCCCTCAAGCACCAAATCCTTCTCTGCAACATTCACAAATGGGGTTCAAAGAGACCACAAAGGAGGCTACAAATATGAACACGATCAAAGCCAACTATAACAACAATTACAGATCAATGTGGAACGACGATTGCTTCACAGTTCCTCAGATTAGTCCTCCATCTGGTGGCTCCAAGAGGTCTAGGCCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000989 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009641 GO:0009791 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

297

Amino Acids

32.6

Weight (kDa)

5.98

Isoelectric Point (pI)

54.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	55 - 93	1.3e-06	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75540
fragaria_vesca	FvH4_2g38990
malus_domestica	MD08G1021000.v1.1 MD15G1018700.v1.1 MD15G1019000.v1.1
prunus_persica	Prupe.1G371100_v2.0.a1 Prupe.1G371100_v2.0.a1
pyrus_communis	pycom08g01660 pycom15g01580
rosa_chinensis	RchiOBHm_Chr6g0302091
rosa_laevigata	RLG00000011196
rosa_multiflora	Rmu_ssc0000160.1_g000008
rosa_roxburghii	Rroxscaffold_7G00166090
rosa_rugosa	Rorug06G0312300
rosa_samantha	Rh6AG424600 Rh6BG477800 Rh6CG437500 Rh6DG424500
rosa_wichuraiana	Rw6G036770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccB7I	CCANNNNNTGG	2 cut(s)	503, 866
AccII	CGCG	2 cut(s)	38, 116
AciI	CCGC	2 cut(s)	54, 359
AclWI	GGATC	1 cut(s)	520
AcsI	RAATTY	1 cut(s)	487
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	2 cut(s)	460, 536
AfiI	CCNNNNNNNGG	3 cut(s)	503, 863, 866
AflIII	ACRYGT	2 cut(s)	18, 36
AgsI	TTSAA	4 cut(s)	426, 453, 569, 748
AhdI	GACNNNNNGTC	1 cut(s)	37
AhlI	ACTAGT	2 cut(s)	455, 461
AjiI	CACGTC	1 cut(s)	19
AluBI	AGCT	6 cut(s)	68, 112, 200, 316, 629, 669
AluI	AGCT	6 cut(s)	68, 112, 200, 316, 629, 669
Alw21I	GWGCWC	1 cut(s)	671
Alw26I	GTCTC	4 cut(s)	187, 415, 539, 746
AlwI	GGATC	1 cut(s)	520
AoxI	GGCC	1 cut(s)	884
ApeKI	GCWGC	3 cut(s)	65, 81, 356
ApoI	RAATTY	1 cut(s)	487
Asp700I	GAANNNNTTC	1 cut(s)	573
AspS9I	GGNCC	1 cut(s)	700
AsuC2I	CCSGG	1 cut(s)	555
AvaII	GGWCC	1 cut(s)	700
BanII	GRGCYC	1 cut(s)	671
BbsI	GAAGAC	1 cut(s)	576
Bbv12I	GWGCWC	1 cut(s)	671
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	3 cut(s)	68, 77, 343
BccI	CCATC	3 cut(s)	497, 603, 868
BceAI	ACGGC	1 cut(s)	94
BclI	TGATCA	1 cut(s)	387
BcnI	CCSGG	1 cut(s)	555
BcoDI	GTCTC	4 cut(s)	187, 415, 539, 746
BcuI	ACTAGT	2 cut(s)	455, 461
BfaI	CTAG	3 cut(s)	456, 462, 882
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	3 cut(s)	66, 82, 357
BlsI	GCNGC	3 cut(s)	67, 83, 358
BmcAI	AGTACT	2 cut(s)	460, 536
Bme1390I	CCNGG	1 cut(s)	555
Bme18I	GGWCC	1 cut(s)	700
BmeRI	GACNNNNNGTC	1 cut(s)	37
BmgBI	CACGTC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	700
BmiI	GGNNCC	3 cut(s)	701, 702, 871
BmrFI	CCNGG	1 cut(s)	555
BmsI	GCATC	1 cut(s)	350
BoxI	GACNNNNGTC	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	576
Bpu10I	CCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	2 cut(s)	356, 690
BpuMI	CCSGG	1 cut(s)	555
BsaI	GGTCTC	1 cut(s)	746
Bsc4I	CCNNNNNNNGG	3 cut(s)	503, 863, 866
Bse1I	ACTGG	1 cut(s)	10
BseGI	GGATG	2 cut(s)	141, 595
BseLI	CCNNNNNNNGG	3 cut(s)	503, 863, 866
BseMII	CTCAG	4 cut(s)	293, 392, 656, 860
BseNI	ACTGG	1 cut(s)	10
BseRI	GAGGAG	2 cut(s)	142, 403
BseXI	GCAGC	3 cut(s)	68, 77, 343
BsgI	GTGCAG	1 cut(s)	34
Bsh1236I	CGCG	2 cut(s)	38, 116
BshFI	GGCC	1 cut(s)	886
BsiHKAI	GWGCWC	1 cut(s)	671
BsiSI	CCGG	1 cut(s)	554
BslFI	GGGAC	2 cut(s)	151, 686
BslI	CCNNNNNNNGG	3 cut(s)	503, 863, 866
BsmAI	GTCTC	4 cut(s)	187, 415, 539, 746
BsmFI	GGGAC	2 cut(s)	151, 686
BsnI	GGCC	1 cut(s)	886
Bso31I	GGTCTC	1 cut(s)	746
Bsp1286I	GDGCHC	1 cut(s)	671
Bsp143I	GATC	6 cut(s)	6, 367, 387, 512, 783, 812
BspACI	CCGC	2 cut(s)	54, 359
BspANI	GGCC	1 cut(s)	886
BspCNI	CTCAG	4 cut(s)	292, 391, 657, 859
BspFNI	CGCG	2 cut(s)	38, 116
BspLI	GGNNCC	3 cut(s)	701, 702, 871
BspPI	GGATC	1 cut(s)	520
BspTNI	GGTCTC	1 cut(s)	746
BsrI	ACTGG	1 cut(s)	10
BssMI	GATC	6 cut(s)	6, 367, 387, 512, 783, 812
Bst4CI	ACNGT	4 cut(s)	92, 251, 334, 841
Bst6I	CTCTTC	2 cut(s)	160, 555
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	5 cut(s)	279, 378, 444, 665, 846
BstF5I	GGATG	2 cut(s)	141, 595
BstFNI	CGCG	2 cut(s)	38, 116
BstKTI	GATC	6 cut(s)	9, 370, 390, 515, 786, 815
BstMAI	GTCTC	4 cut(s)	187, 415, 539, 746
BstMBI	GATC	6 cut(s)	6, 367, 387, 512, 783, 812
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 81, 666
BstPAI	GACNNNNGTC	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	553
BstUI	CGCG	2 cut(s)	38, 116
BstV1I	GCAGC	3 cut(s)	68, 77, 343
BstV2I	GAAGAC	1 cut(s)	576
BstX2I	RGATCY	1 cut(s)	6
BstXI	CCANNNNNNTGG	1 cut(s)	602
BstYI	RGATCY	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	886
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	2 cut(s)	141, 595
BtsIMutI	CAGTG	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	700
CseI	GACGC	3 cut(s)	27, 44, 105
Csp6I	GTAC	2 cut(s)	459, 535
CviAII	CATG	1 cut(s)	688
CviQI	GTAC	2 cut(s)	459, 535
DdeI	CTNAG	5 cut(s)	279, 378, 444, 665, 846
DpnI	GATC	6 cut(s)	8, 369, 389, 514, 785, 814
DpnII	GATC	6 cut(s)	6, 367, 387, 512, 783, 812
DrdI	GACNNNNNNGTC	1 cut(s)	92
DriI	GACNNNNNGTC	1 cut(s)	37
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eam1104I	CTCTTC	2 cut(s)	160, 555
Eam1105I	GACNNNNNGTC	1 cut(s)	37
EarI	CTCTTC	2 cut(s)	160, 555
Ecl136II	GAGCTC	1 cut(s)	669
Eco147I	AGGCCT	1 cut(s)	886
Eco24I	GRGCYC	1 cut(s)	671
Eco31I	GGTCTC	1 cut(s)	746
Eco32I	GATATC	1 cut(s)	652
Eco47I	GGWCC	1 cut(s)	700
Eco53kI	GAGCTC	1 cut(s)	669
Eco57I	CTGAAG	1 cut(s)	420
EcoICRI	GAGCTC	1 cut(s)	669
EcoO109I	RGGNCCY	1 cut(s)	700
EcoRV	GATATC	1 cut(s)	652
EcoT38I	GRGCYC	1 cut(s)	671
FaeI	CATG	1 cut(s)	691
FaiI	YATR	8 cut(s)	235, 276, 288, 499, 527, 689, 776, 798
FalI	AAGNNNNNCTT	4 cut(s)	418, 450, 561, 593
FaqI	GGGAC	2 cut(s)	151, 686
FatI	CATG	1 cut(s)	687
FbaI	TGATCA	1 cut(s)	387
Fnu4HI	GCNGC	3 cut(s)	66, 82, 357
FokI	GGATG	2 cut(s)	128, 582
FriOI	GRGCYC	1 cut(s)	671
Fsp4HI	GCNGC	3 cut(s)	66, 82, 357
FspBI	CTAG	3 cut(s)	456, 462, 882
GluI	GCNGC	3 cut(s)	66, 82, 357
HaeIII	GGCC	1 cut(s)	886
HapII	CCGG	1 cut(s)	554
HgaI	GACGC	3 cut(s)	27, 44, 105
Hin1II	CATG	1 cut(s)	691
HindIII	AAGCTT	1 cut(s)	198
HinfI	GANTC	4 cut(s)	164, 256, 350, 547
HpaII	CCGG	1 cut(s)	554
Hpy166II	GTNNAC	3 cut(s)	97, 337, 431
Hpy188I	TCNGA	6 cut(s)	282, 349, 532, 666, 682, 849
Hpy188III	TCNNGA	2 cut(s)	188, 578
Hpy8I	GTNNAC	3 cut(s)	97, 337, 431
Hpy99I	CGWCG	5 cut(s)	38, 43, 62, 80, 830
HpyAV	CCTTC	3 cut(s)	444, 584, 729
HpyCH4III	ACNGT	4 cut(s)	92, 251, 334, 841
HpyCH4IV	ACGT	2 cut(s)	18, 564
HpyCH4V	TGCA	4 cut(s)	24, 51, 266, 727
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 81, 666
HpyF3I	CTNAG	5 cut(s)	279, 378, 444, 665, 846
HpySE526I	ACGT	2 cut(s)	18, 564
Hsp92II	CATG	1 cut(s)	691
KflI	GGGWCCC	1 cut(s)	700
Ksp22I	TGATCA	1 cut(s)	387
Kzo9I	GATC	6 cut(s)	6, 367, 387, 512, 783, 812
LmnI	GCTCC	2 cut(s)	626, 875
LpnPI	CCDG	6 cut(s)	23, 173, 203, 291, 567, 849
Lsp1109I	GCAGC	3 cut(s)	68, 77, 343
LweI	GCATC	1 cut(s)	350
MaeI	CTAG	3 cut(s)	456, 462, 882
MaeII	ACGT	2 cut(s)	18, 564
MaeIII	GTNAC	4 cut(s)	14, 245, 361, 464
MalI	GATC	6 cut(s)	8, 369, 389, 514, 785, 814
MboI	GATC	6 cut(s)	6, 367, 387, 512, 783, 812
MboII	GAAGA	5 cut(s)	16, 147, 336, 542, 581
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	671
MluCI	AATT	3 cut(s)	228, 487, 805
MluI	ACGCGT	1 cut(s)	36
MlyI	GAGTC	2 cut(s)	173, 541
MmeI	TCCRAC	1 cut(s)	490
MroXI	GAANNNNTTC	1 cut(s)	573
MspI	CCGG	1 cut(s)	554
MspR9I	CCNGG	1 cut(s)	555
MvnI	CGCG	2 cut(s)	38, 116
MwoI	GCNNNNNNNGC	3 cut(s)	62, 81, 666
NciI	CCSGG	1 cut(s)	555
NdeII	GATC	6 cut(s)	6, 367, 387, 512, 783, 812
NlaIII	CATG	1 cut(s)	691
NlaIV	GGNNCC	3 cut(s)	701, 702, 871
NmuCI	GTSAC	2 cut(s)	14, 245
PceI	AGGCCT	1 cut(s)	886
PdmI	GAANNNNTTC	1 cut(s)	573
PfeI	GAWTC	2 cut(s)	256, 350
PflMI	CCANNNNNTGG	2 cut(s)	503, 866
PkrI	GCNGC	3 cut(s)	67, 83, 358
PleI	GAGTC	2 cut(s)	172, 541
PpsI	GAGTC	2 cut(s)	172, 541
PpuMI	RGGWCCY	1 cut(s)	700
PshAI	GACNNNNGTC	1 cut(s)	183
Psp124BI	GAGCTC	1 cut(s)	671
Psp5II	RGGWCCY	1 cut(s)	700
PspN4I	GGNNCC	3 cut(s)	701, 702, 871
PspPI	GGNCC	1 cut(s)	700
PspPPI	RGGWCCY	1 cut(s)	700
PsuI	RGATCY	1 cut(s)	6
RsaI	GTAC	2 cut(s)	460, 536
RsaNI	GTAC	2 cut(s)	459, 535
SacI	GAGCTC	1 cut(s)	671
SatI	GCNGC	3 cut(s)	66, 82, 357
Sau3AI	GATC	6 cut(s)	6, 367, 387, 512, 783, 812
Sau96I	GGNCC	1 cut(s)	700
ScaI	AGTACT	2 cut(s)	460, 536
SchI	GAGTC	2 cut(s)	173, 541
ScrFI	CCNGG	1 cut(s)	555
SduI	GDGCHC	1 cut(s)	671
SfaNI	GCATC	1 cut(s)	350
SinI	GGWCC	1 cut(s)	700
SmlI	CTYRAG	2 cut(s)	371, 705
SmoI	CTYRAG	2 cut(s)	371, 705
SpeI	ACTAGT	2 cut(s)	455, 461
Sse9I	AATT	3 cut(s)	228, 487, 805
SseBI	AGGCCT	1 cut(s)	886
SsiI	CCGC	2 cut(s)	54, 359
SspMI	CTAG	3 cut(s)	456, 462, 882
SstI	GAGCTC	1 cut(s)	671
StuI	AGGCCT	1 cut(s)	886
StyD4I	CCNGG	1 cut(s)	553
TaaI	ACNGT	4 cut(s)	92, 251, 334, 841
TaiI	ACGT	2 cut(s)	21, 567
TaqI	TCGA	3 cut(s)	254, 642, 654
TaqII	GACCGA	1 cut(s)	557
TasI	AATT	3 cut(s)	228, 487, 805
TatI	WGTACW	2 cut(s)	458, 534
TfiI	GAWTC	2 cut(s)	256, 350
TscAI	CASTG	1 cut(s)	17
TseFI	GTSAC	2 cut(s)	14, 245
TseI	GCWGC	3 cut(s)	65, 81, 356
Tsp45I	GTSAC	2 cut(s)	14, 245
TspDTI	ATGAA	2 cut(s)	17, 791
TspRI	CASTG	1 cut(s)	17
Van91I	CCANNNNNTGG	2 cut(s)	503, 866
VpaK11BI	GGWCC	1 cut(s)	700
XapI	RAATTY	1 cut(s)	487
XmnI	GAANNNNTTC	1 cut(s)	573
XspI	CTAG	3 cut(s)	456, 462, 882
ZrmI	AGTACT	2 cut(s)	460, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.