Rw6G036770

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0011847
Physical Location & Seq
Forward (+)
61193970 .. 61195637
1668 bp
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UTR
Exon/CDS
Intron
Rw6G036770.1

Sequence Viewer

Length: 630 bp
ATGAAGATCCAGTGTGACGCGTGCAACAAGGACGACGCGTCGGTGTTCTGCACCGCCGACGAGGCAGCTCTCTGCGACGGCTGCGACCACCGTGTCCACCACGCCAACAAGCTCGCGTCCAAACACCAACGCTTCTCGCTCATCCACCCCTCCTCTTCTAAAGAGTCCCCTCTCTGCGACATCTGTCAGGAGAGACGAGCTTTCTTGTTCTGTCAGCAGGACAGAGCAATTTTATGTAGAGAGTGTGACGGTTCGATTCACTCTGCAAACGAACATACTCAGAAGCATAATCGGTATCTTTTCACAGGGGTCAAGCTCTCTGCTACGTCAACAGTTTACGCATCTTCTGATTCTGCTGCGGTTACTGATCTCAAGCCTCAGCCTTTGATCAATAAGAAGCCTATTTCAGTCTCCTCTGCTATTTCAAGTCCACCTTCAGTTCCTAAGATTTCAAATAGTACTAGTAACAGCACTAAAAATGGTGGAAATTTGCTACCATACGATGGGGTTGGATCAATGAGTAGCATATCAGAGTACTTGACCGAGACTCTTCCGGGTTGGCACGTTGAAGACCTTCTTGATTTTTCGTCTAACCATCCCTTTGGTTTCTGTAAGGTTTGCATTGATTGA

Protein Analysis

209

Amino Acids

22.78

Weight (kDa)

6.34

Isoelectric Point (pI)

52.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 55 - 93 6.2e-07 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011847)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75540
fragaria_vesca FvH4_2g38990
malus_domestica MD08G1021000.v1.1 MD15G1018700.v1.1 MD15G1019000.v1.1
prunus_persica Prupe.1G371100_v2.0.a1 Prupe.1G371100_v2.0.a1
pyrus_communis pycom08g01660 pycom15g01580
rosa_chinensis RchiOBHm_Chr6g0302091
rosa_laevigata RLG00000011196
rosa_multiflora Rmu_ssc0000160.1_g000008
rosa_roxburghii Rroxscaffold_7G00166090
rosa_rugosa Rorug06G0312300
rosa_samantha Rh6AG424600 Rh6BG477800 Rh6CG437500 Rh6DG424500
rosa_wichuraiana Rw6G036770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
AccB7I CCANNNNNTGG 1 cut(s) 503
AccII CGCG 3 cut(s) 20, 38, 116
AciI CCGC 2 cut(s) 54, 359
AclWI GGATC 1 cut(s) 520
AcsI RAATTY 1 cut(s) 487
AcuI CTGAAG 1 cut(s) 420
AfaI GTAC 2 cut(s) 460, 536
AfiI CCNNNNNNNGG 1 cut(s) 503
AflIII ACRYGT 2 cut(s) 18, 36
AgsI TTSAA 3 cut(s) 426, 453, 569
AhdI GACNNNNNGTC 1 cut(s) 37
AhlI ACTAGT 1 cut(s) 461
AluBI AGCT 4 cut(s) 68, 112, 200, 316
AluI AGCT 4 cut(s) 68, 112, 200, 316
Alw26I GTCTC 3 cut(s) 187, 415, 539
AlwI GGATC 1 cut(s) 520
ApeKI GCWGC 3 cut(s) 65, 81, 356
ApoI RAATTY 1 cut(s) 487
Asp700I GAANNNNTTC 1 cut(s) 573
AsuC2I CCSGG 1 cut(s) 555
BbsI GAAGAC 1 cut(s) 576
BbvCI CCTCAGC 1 cut(s) 378
BbvI GCAGC 3 cut(s) 68, 77, 343
BccI CCATC 2 cut(s) 497, 603
BceAI ACGGC 1 cut(s) 94
BclI TGATCA 1 cut(s) 387
BcnI CCSGG 1 cut(s) 555
BcoDI GTCTC 3 cut(s) 187, 415, 539
BcuI ACTAGT 1 cut(s) 461
BfaI CTAG 1 cut(s) 462
BglI GCCNNNNNGGC 1 cut(s) 62
BisI GCNGC 3 cut(s) 66, 82, 357
BlsI GCNGC 3 cut(s) 67, 83, 358
BmcAI AGTACT 2 cut(s) 460, 536
Bme1390I CCNGG 1 cut(s) 555
BmeRI GACNNNNNGTC 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 555
BmsI GCATC 1 cut(s) 350
BoxI GACNNNNGTC 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 576
Bpu10I CCTNAGC 1 cut(s) 378
BpuEI CTTGAG 1 cut(s) 356
BpuMI CCSGG 1 cut(s) 555
Bsc4I CCNNNNNNNGG 1 cut(s) 503
Bse1I ACTGG 1 cut(s) 10
BseGI GGATG 2 cut(s) 141, 595
BseLI CCNNNNNNNGG 1 cut(s) 503
BseMII CTCAG 2 cut(s) 293, 392
BseNI ACTGG 1 cut(s) 10
BseRI GAGGAG 2 cut(s) 142, 403
BseXI GCAGC 3 cut(s) 68, 77, 343
BsgI GTGCAG 1 cut(s) 34
Bsh1236I CGCG 3 cut(s) 20, 38, 116
BsiSI CCGG 1 cut(s) 554
BslFI GGGAC 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 503
BsmAI GTCTC 3 cut(s) 187, 415, 539
BsmBI CGTCTC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 151
Bsp143I GATC 4 cut(s) 6, 367, 387, 512
BspACI CCGC 2 cut(s) 54, 359
BspCNI CTCAG 2 cut(s) 292, 391
BspFNI CGCG 3 cut(s) 20, 38, 116
BspPI GGATC 1 cut(s) 520
BsrI ACTGG 1 cut(s) 10
BssMI GATC 4 cut(s) 6, 367, 387, 512
Bst4CI ACNGT 3 cut(s) 92, 251, 334
Bst6I CTCTTC 2 cut(s) 160, 555
BstC8I GCNNGC 2 cut(s) 22, 114
BstDEI CTNAG 3 cut(s) 279, 378, 444
BstF5I GGATG 2 cut(s) 141, 595
BstFNI CGCG 3 cut(s) 20, 38, 116
BstKTI GATC 4 cut(s) 9, 370, 390, 515
BstMAI GTCTC 3 cut(s) 187, 415, 539
BstMBI GATC 4 cut(s) 6, 367, 387, 512
BstMWI GCNNNNNNNGC 2 cut(s) 62, 81
BstPAI GACNNNNGTC 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 553
BstUI CGCG 3 cut(s) 20, 38, 116
BstV1I GCAGC 3 cut(s) 68, 77, 343
BstV2I GAAGAC 1 cut(s) 576
BstX2I RGATCY 1 cut(s) 6
BstXI CCANNNNNNTGG 1 cut(s) 602
BstYI RGATCY 1 cut(s) 6
BtsCI GGATG 2 cut(s) 141, 595
BtsIMutI CAGTG 1 cut(s) 17
Cac8I GCNNGC 2 cut(s) 22, 114
CseI GACGC 4 cut(s) 26, 27, 44, 105
Csp6I GTAC 2 cut(s) 459, 535
CviJI RGCY 8 cut(s) 68, 81, 112, 200, 316, 376, 382, 400
CviKI_1 RGCY 8 cut(s) 68, 81, 112, 200, 316, 376, 382, 400
CviQI GTAC 2 cut(s) 459, 535
DdeI CTNAG 3 cut(s) 279, 378, 444
DpnI GATC 4 cut(s) 8, 369, 389, 514
DpnII GATC 4 cut(s) 6, 367, 387, 512
DrdI GACNNNNNNGTC 1 cut(s) 92
DriI GACNNNNNGTC 1 cut(s) 37
DseDI GACNNNNNNGTC 1 cut(s) 92
Eam1104I CTCTTC 2 cut(s) 160, 555
Eam1105I GACNNNNNGTC 1 cut(s) 37
EarI CTCTTC 2 cut(s) 160, 555
Eco57I CTGAAG 1 cut(s) 420
Esp3I CGTCTC 1 cut(s) 187
FaiI YATR 5 cut(s) 235, 276, 288, 499, 527
FalI AAGNNNNNCTT 4 cut(s) 418, 450, 561, 593
FaqI GGGAC 1 cut(s) 151
FbaI TGATCA 1 cut(s) 387
Fnu4HI GCNGC 3 cut(s) 66, 82, 357
FokI GGATG 2 cut(s) 128, 582
Fsp4HI GCNGC 3 cut(s) 66, 82, 357
FspBI CTAG 1 cut(s) 462
GluI GCNGC 3 cut(s) 66, 82, 357
HapII CCGG 1 cut(s) 554
HgaI GACGC 4 cut(s) 26, 27, 44, 105
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HinfI GANTC 4 cut(s) 164, 256, 350, 547
HpaII CCGG 1 cut(s) 554
Hpy166II GTNNAC 4 cut(s) 97, 330, 337, 431
Hpy188I TCNGA 3 cut(s) 282, 349, 532
Hpy188III TCNNGA 2 cut(s) 188, 578
Hpy8I GTNNAC 4 cut(s) 97, 330, 337, 431
Hpy99I CGWCG 4 cut(s) 38, 43, 62, 80
HpyAV CCTTC 2 cut(s) 444, 584
HpyCH4III ACNGT 3 cut(s) 92, 251, 334
HpyCH4IV ACGT 2 cut(s) 326, 564
HpyCH4V TGCA 4 cut(s) 24, 51, 266, 621
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 81
HpyF3I CTNAG 3 cut(s) 279, 378, 444
HpySE526I ACGT 2 cut(s) 326, 564
Ksp22I TGATCA 1 cut(s) 387
Kzo9I GATC 4 cut(s) 6, 367, 387, 512
LpnPI CCDG 5 cut(s) 23, 173, 203, 291, 567
Lsp1109I GCAGC 3 cut(s) 68, 77, 343
LweI GCATC 1 cut(s) 350
MaeI CTAG 1 cut(s) 462
MaeII ACGT 2 cut(s) 326, 564
MaeIII GTNAC 4 cut(s) 14, 245, 361, 464
MalI GATC 4 cut(s) 8, 369, 389, 514
MboI GATC 4 cut(s) 6, 367, 387, 512
MboII GAAGA 5 cut(s) 16, 147, 336, 542, 581
MflI RGATCY 1 cut(s) 6
MluCI AATT 2 cut(s) 228, 487
MluI ACGCGT 2 cut(s) 18, 36
MlyI GAGTC 2 cut(s) 173, 541
MmeI TCCRAC 1 cut(s) 490
MnlI CCTC 6 cut(s) 55, 160, 163, 180, 387, 424
MroXI GAANNNNTTC 1 cut(s) 573
MspI CCGG 1 cut(s) 554
MspR9I CCNGG 1 cut(s) 555
MvnI CGCG 3 cut(s) 20, 38, 116
MwoI GCNNNNNNNGC 2 cut(s) 62, 81
NciI CCSGG 1 cut(s) 555
NdeII GATC 4 cut(s) 6, 367, 387, 512
NmuCI GTSAC 2 cut(s) 14, 245
PdmI GAANNNNTTC 1 cut(s) 573
PfeI GAWTC 2 cut(s) 256, 350
PflMI CCANNNNNTGG 1 cut(s) 503
PkrI GCNGC 3 cut(s) 67, 83, 358
PleI GAGTC 2 cut(s) 172, 541
PpsI GAGTC 2 cut(s) 172, 541
PshAI GACNNNNGTC 1 cut(s) 183
PsuI RGATCY 1 cut(s) 6
RsaI GTAC 2 cut(s) 460, 536
RsaNI GTAC 2 cut(s) 459, 535
SatI GCNGC 3 cut(s) 66, 82, 357
Sau3AI GATC 4 cut(s) 6, 367, 387, 512
ScaI AGTACT 2 cut(s) 460, 536
SchI GAGTC 2 cut(s) 173, 541
ScrFI CCNGG 1 cut(s) 555
SetI ASST 9 cut(s) 70, 114, 202, 318, 329, 436, 567, 576, 618
SfaNI GCATC 1 cut(s) 350
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
SpeI ACTAGT 1 cut(s) 461
Sse9I AATT 2 cut(s) 228, 487
SsiI CCGC 2 cut(s) 54, 359
SspMI CTAG 1 cut(s) 462
StyD4I CCNGG 1 cut(s) 553
TaaI ACNGT 3 cut(s) 92, 251, 334
TaiI ACGT 2 cut(s) 329, 567
TaqI TCGA 1 cut(s) 254
TaqII GACCGA 1 cut(s) 557
TasI AATT 2 cut(s) 228, 487
TatI WGTACW 2 cut(s) 458, 534
TfiI GAWTC 2 cut(s) 256, 350
TscAI CASTG 1 cut(s) 17
TseFI GTSAC 2 cut(s) 14, 245
TseI GCWGC 3 cut(s) 65, 81, 356
Tsp45I GTSAC 2 cut(s) 14, 245
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 503
XapI RAATTY 1 cut(s) 487
XmnI GAANNNNTTC 1 cut(s) 573
XspI CTAG 1 cut(s) 462
ZrmI AGTACT 2 cut(s) 460, 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.