Rh6AG424600

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0011847
Physical Location & Seq
Forward (+)
61695317 .. 61696446
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG424600.1

Sequence Viewer

Length: 894 bp
ATGAAGATCCAGTGTGACGCGTGCAACAAGGACGACGCGTCGGTGTTCTGCACCGCCGACGAGGCAGCTCTCTGCGACGGCTGCGACCACCGTGTCCACCACGCCAACAAGCTCGCGTCCAAACACCAACGCTTCTCGCTCATCCACCCCTCCTCTTCTAAAGAGTCCCCTCTCTGCGACATCTGTCAGGAGAGACGAGCTTTCTTGTTCTGTCAGCAGGACAGAGCAATTTTATGTAGAGAGTGTGACGGTTCGATTCACTCTGCAAACGAACATACTCAGAAGCATAATCGGTATCTTTTCACAGGGGTCAAGCTCTCTGCTACGTCAACAGTTTACGCATCTTCTGATTCTGCTGCGGTTACTGATCTCAAGCCTCAGCCTTTGATCAATAAGAAGCCTATTTCAGTCTCCTCTGCTATTTCAAGTCCACCTTCAGTTCCTAAGATTTCAAATAGTACTAGTAACAGCACTAAAAATGGTGGAAATTTGCTACCATACGATGGGGTTGGATCAATGAGTAGCATATCAGAGTACTTGACCGAGACTCTTCCGGGTTGGCACGTTGAAGACCTTCTTGATTTTTCGTCTAACCATCCCTTTGGTTTCTGTAAGGCTGACAATGGAGGTACCTTTTTCGATGATGATATCGAAAGCAATCTGAGTTCTTTCTCGTCAGAAAACATGGGGATTTGGGTCCCTCAAGCACCAAATCCTTCTCTGCAACATTCACAAATGGGGTTCAAAGAGACCACAAAGGAGGCTACAAATATGAACACGATCAAAGCCAACTATAACAACAATTACAGATCACTGTGGAACGACGATGGCTTCACAGTTCCTCAGATTAGTCCTCCATCTGTTGTTGGCTCCAAGAGGTCTAGGCCTTTTTGA

Protein Analysis

297

Amino Acids

32.56

Weight (kDa)

6.11

Isoelectric Point (pI)

57.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 55 - 93 1.1e-06 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011847)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75540
fragaria_vesca FvH4_2g38990
malus_domestica MD08G1021000.v1.1 MD15G1018700.v1.1 MD15G1019000.v1.1
prunus_persica Prupe.1G371100_v2.0.a1 Prupe.1G371100_v2.0.a1
pyrus_communis pycom08g01660 pycom15g01580
rosa_chinensis RchiOBHm_Chr6g0302091
rosa_laevigata RLG00000011196
rosa_multiflora Rmu_ssc0000160.1_g000008
rosa_roxburghii Rroxscaffold_7G00166090
rosa_rugosa Rorug06G0312300
rosa_samantha Rh6AG424600 Rh6BG477800 Rh6CG437500 Rh6DG424500
rosa_wichuraiana Rw6G036770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
Acc65I GGTACC 1 cut(s) 629
AccB1I GGYRCC 1 cut(s) 629
AccB7I CCANNNNNTGG 1 cut(s) 503
AccII CGCG 3 cut(s) 20, 38, 116
AciI CCGC 2 cut(s) 54, 359
AclWI GGATC 1 cut(s) 520
AcsI RAATTY 1 cut(s) 487
AcuI CTGAAG 1 cut(s) 420
AfaI GTAC 3 cut(s) 460, 536, 631
AfiI CCNNNNNNNGG 1 cut(s) 503
AflIII ACRYGT 2 cut(s) 18, 36
AgsI TTSAA 4 cut(s) 426, 453, 569, 745
AhdI GACNNNNNGTC 1 cut(s) 37
AhlI ACTAGT 1 cut(s) 461
AluBI AGCT 4 cut(s) 68, 112, 200, 316
AluI AGCT 4 cut(s) 68, 112, 200, 316
Alw26I GTCTC 4 cut(s) 187, 415, 539, 743
AlwI GGATC 1 cut(s) 520
AoxI GGCC 1 cut(s) 884
ApeKI GCWGC 3 cut(s) 65, 81, 356
ApoI RAATTY 1 cut(s) 487
Asp700I GAANNNNTTC 1 cut(s) 573
Asp718I GGTACC 1 cut(s) 629
AspS9I GGNCC 1 cut(s) 697
AsuC2I CCSGG 1 cut(s) 555
AvaII GGWCC 1 cut(s) 697
BanI GGYRCC 1 cut(s) 629
BbsI GAAGAC 1 cut(s) 576
BbvCI CCTCAGC 1 cut(s) 378
BbvI GCAGC 3 cut(s) 68, 77, 343
BccI CCATC 4 cut(s) 497, 603, 821, 865
BceAI ACGGC 1 cut(s) 94
BclI TGATCA 1 cut(s) 387
BcnI CCSGG 1 cut(s) 555
BcoDI GTCTC 4 cut(s) 187, 415, 539, 743
BcuI ACTAGT 1 cut(s) 461
BfaI CTAG 2 cut(s) 462, 882
BglI GCCNNNNNGGC 1 cut(s) 62
BisI GCNGC 3 cut(s) 66, 82, 357
BlsI GCNGC 3 cut(s) 67, 83, 358
BmcAI AGTACT 2 cut(s) 460, 536
Bme1390I CCNGG 1 cut(s) 555
Bme18I GGWCC 1 cut(s) 697
BmeRI GACNNNNNGTC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 697
BmiI GGNNCC 4 cut(s) 631, 698, 699, 871
BmrFI CCNGG 1 cut(s) 555
BmsI GCATC 1 cut(s) 350
BoxI GACNNNNGTC 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 576
Bpu10I CCTNAGC 1 cut(s) 378
BpuEI CTTGAG 2 cut(s) 356, 687
BpuMI CCSGG 1 cut(s) 555
BsaI GGTCTC 1 cut(s) 743
Bsc4I CCNNNNNNNGG 1 cut(s) 503
Bse1I ACTGG 1 cut(s) 10
BseGI GGATG 2 cut(s) 141, 595
BseLI CCNNNNNNNGG 1 cut(s) 503
BseMII CTCAG 4 cut(s) 293, 392, 653, 857
BseNI ACTGG 1 cut(s) 10
BseRI GAGGAG 2 cut(s) 142, 403
BseXI GCAGC 3 cut(s) 68, 77, 343
BsgI GTGCAG 1 cut(s) 34
Bsh1236I CGCG 3 cut(s) 20, 38, 116
BshFI GGCC 1 cut(s) 886
BshNI GGYRCC 1 cut(s) 629
BsiSI CCGG 1 cut(s) 554
BslFI GGGAC 2 cut(s) 151, 683
BslI CCNNNNNNNGG 1 cut(s) 503
BsmAI GTCTC 4 cut(s) 187, 415, 539, 743
BsmBI CGTCTC 1 cut(s) 187
BsmFI GGGAC 2 cut(s) 151, 683
BsnI GGCC 1 cut(s) 886
Bso31I GGTCTC 1 cut(s) 743
Bsp143I GATC 6 cut(s) 6, 367, 387, 512, 780, 809
BspACI CCGC 2 cut(s) 54, 359
BspANI GGCC 1 cut(s) 886
BspCNI CTCAG 4 cut(s) 292, 391, 654, 856
BspFNI CGCG 3 cut(s) 20, 38, 116
BspLI GGNNCC 4 cut(s) 631, 698, 699, 871
BspPI GGATC 1 cut(s) 520
BspT107I GGYRCC 1 cut(s) 629
BspTNI GGTCTC 1 cut(s) 743
BsrI ACTGG 1 cut(s) 10
BssMI GATC 6 cut(s) 6, 367, 387, 512, 780, 809
Bst4CI ACNGT 5 cut(s) 92, 251, 334, 816, 838
Bst6I CTCTTC 2 cut(s) 160, 555
BstC8I GCNNGC 2 cut(s) 22, 114
BstDEI CTNAG 5 cut(s) 279, 378, 444, 662, 843
BstF5I GGATG 2 cut(s) 141, 595
BstFNI CGCG 3 cut(s) 20, 38, 116
BstKTI GATC 6 cut(s) 9, 370, 390, 515, 783, 812
BstMAI GTCTC 4 cut(s) 187, 415, 539, 743
BstMBI GATC 6 cut(s) 6, 367, 387, 512, 780, 809
BstMWI GCNNNNNNNGC 2 cut(s) 62, 81
BstPAI GACNNNNGTC 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 553
BstUI CGCG 3 cut(s) 20, 38, 116
BstV1I GCAGC 3 cut(s) 68, 77, 343
BstV2I GAAGAC 1 cut(s) 576
BstX2I RGATCY 1 cut(s) 6
BstXI CCANNNNNNTGG 1 cut(s) 602
BstYI RGATCY 1 cut(s) 6
BsuRI GGCC 1 cut(s) 886
BtsCI GGATG 2 cut(s) 141, 595
BtsIMutI CAGTG 2 cut(s) 17, 812
Cac8I GCNNGC 2 cut(s) 22, 114
Cfr13I GGNCC 1 cut(s) 697
CseI GACGC 4 cut(s) 26, 27, 44, 105
Csp6I GTAC 3 cut(s) 459, 535, 630
CviAII CATG 1 cut(s) 685
CviQI GTAC 3 cut(s) 459, 535, 630
DdeI CTNAG 5 cut(s) 279, 378, 444, 662, 843
DpnI GATC 6 cut(s) 8, 369, 389, 514, 782, 811
DpnII GATC 6 cut(s) 6, 367, 387, 512, 780, 809
DrdI GACNNNNNNGTC 1 cut(s) 92
DriI GACNNNNNGTC 1 cut(s) 37
DseDI GACNNNNNNGTC 1 cut(s) 92
Eam1104I CTCTTC 2 cut(s) 160, 555
Eam1105I GACNNNNNGTC 1 cut(s) 37
EarI CTCTTC 2 cut(s) 160, 555
Eco147I AGGCCT 1 cut(s) 886
Eco31I GGTCTC 1 cut(s) 743
Eco32I GATATC 1 cut(s) 649
Eco47I GGWCC 1 cut(s) 697
Eco57I CTGAAG 1 cut(s) 420
EcoO109I RGGNCCY 1 cut(s) 697
EcoRV GATATC 1 cut(s) 649
Esp3I CGTCTC 1 cut(s) 187
FaeI CATG 1 cut(s) 688
FaiI YATR 8 cut(s) 235, 276, 288, 499, 527, 686, 773, 795
FalI AAGNNNNNCTT 4 cut(s) 418, 450, 561, 593
FaqI GGGAC 2 cut(s) 151, 683
FatI CATG 1 cut(s) 684
FbaI TGATCA 1 cut(s) 387
Fnu4HI GCNGC 3 cut(s) 66, 82, 357
FokI GGATG 2 cut(s) 128, 582
Fsp4HI GCNGC 3 cut(s) 66, 82, 357
FspBI CTAG 2 cut(s) 462, 882
GluI GCNGC 3 cut(s) 66, 82, 357
HaeIII GGCC 1 cut(s) 886
HapII CCGG 1 cut(s) 554
HgaI GACGC 4 cut(s) 26, 27, 44, 105
Hin1II CATG 1 cut(s) 688
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HinfI GANTC 4 cut(s) 164, 256, 350, 547
HpaII CCGG 1 cut(s) 554
Hpy166II GTNNAC 4 cut(s) 97, 330, 337, 431
Hpy188I TCNGA 6 cut(s) 282, 349, 532, 663, 679, 846
Hpy188III TCNNGA 2 cut(s) 188, 578
Hpy8I GTNNAC 4 cut(s) 97, 330, 337, 431
Hpy99I CGWCG 5 cut(s) 38, 43, 62, 80, 827
HpyAV CCTTC 3 cut(s) 444, 584, 726
HpyCH4III ACNGT 5 cut(s) 92, 251, 334, 816, 838
HpyCH4IV ACGT 2 cut(s) 326, 564
HpyCH4V TGCA 4 cut(s) 24, 51, 266, 724
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 81
HpyF3I CTNAG 5 cut(s) 279, 378, 444, 662, 843
HpySE526I ACGT 2 cut(s) 326, 564
Hsp92II CATG 1 cut(s) 688
KflI GGGWCCC 1 cut(s) 697
KpnI GGTACC 1 cut(s) 633
Ksp22I TGATCA 1 cut(s) 387
Kzo9I GATC 6 cut(s) 6, 367, 387, 512, 780, 809
LmnI GCTCC 1 cut(s) 875
LpnPI CCDG 5 cut(s) 23, 173, 203, 291, 567
Lsp1109I GCAGC 3 cut(s) 68, 77, 343
LweI GCATC 1 cut(s) 350
MaeI CTAG 2 cut(s) 462, 882
MaeII ACGT 2 cut(s) 326, 564
MaeIII GTNAC 4 cut(s) 14, 245, 361, 464
MalI GATC 6 cut(s) 8, 369, 389, 514, 782, 811
MboI GATC 6 cut(s) 6, 367, 387, 512, 780, 809
MboII GAAGA 5 cut(s) 16, 147, 336, 542, 581
MflI RGATCY 1 cut(s) 6
MluCI AATT 3 cut(s) 228, 487, 802
MluI ACGCGT 2 cut(s) 18, 36
MlyI GAGTC 2 cut(s) 173, 541
MmeI TCCRAC 1 cut(s) 490
MroXI GAANNNNTTC 1 cut(s) 573
MspI CCGG 1 cut(s) 554
MspR9I CCNGG 1 cut(s) 555
MvnI CGCG 3 cut(s) 20, 38, 116
MwoI GCNNNNNNNGC 2 cut(s) 62, 81
NciI CCSGG 1 cut(s) 555
NdeII GATC 6 cut(s) 6, 367, 387, 512, 780, 809
NlaIII CATG 1 cut(s) 688
NlaIV GGNNCC 4 cut(s) 631, 698, 699, 871
NmuCI GTSAC 2 cut(s) 14, 245
PceI AGGCCT 1 cut(s) 886
PdmI GAANNNNTTC 1 cut(s) 573
PfeI GAWTC 2 cut(s) 256, 350
PflMI CCANNNNNTGG 1 cut(s) 503
PkrI GCNGC 3 cut(s) 67, 83, 358
PleI GAGTC 2 cut(s) 172, 541
PpsI GAGTC 2 cut(s) 172, 541
PpuMI RGGWCCY 1 cut(s) 697
PshAI GACNNNNGTC 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 697
PspN4I GGNNCC 4 cut(s) 631, 698, 699, 871
PspPI GGNCC 1 cut(s) 697
PspPPI RGGWCCY 1 cut(s) 697
PsuI RGATCY 1 cut(s) 6
RsaI GTAC 3 cut(s) 460, 536, 631
RsaNI GTAC 3 cut(s) 459, 535, 630
SatI GCNGC 3 cut(s) 66, 82, 357
Sau3AI GATC 6 cut(s) 6, 367, 387, 512, 780, 809
Sau96I GGNCC 1 cut(s) 697
ScaI AGTACT 2 cut(s) 460, 536
SchI GAGTC 2 cut(s) 173, 541
ScrFI CCNGG 1 cut(s) 555
SfaNI GCATC 1 cut(s) 350
SinI GGWCC 1 cut(s) 697
SmlI CTYRAG 2 cut(s) 371, 702
SmoI CTYRAG 2 cut(s) 371, 702
SpeI ACTAGT 1 cut(s) 461
Sse9I AATT 3 cut(s) 228, 487, 802
SseBI AGGCCT 1 cut(s) 886
SsiI CCGC 2 cut(s) 54, 359
SspMI CTAG 2 cut(s) 462, 882
StuI AGGCCT 1 cut(s) 886
StyD4I CCNGG 1 cut(s) 553
TaaI ACNGT 5 cut(s) 92, 251, 334, 816, 838
TaiI ACGT 2 cut(s) 329, 567
TaqI TCGA 3 cut(s) 254, 639, 651
TaqII GACCGA 1 cut(s) 557
TasI AATT 3 cut(s) 228, 487, 802
TatI WGTACW 2 cut(s) 458, 534
TfiI GAWTC 2 cut(s) 256, 350
TscAI CASTG 2 cut(s) 17, 819
TseFI GTSAC 2 cut(s) 14, 245
TseI GCWGC 3 cut(s) 65, 81, 356
Tsp45I GTSAC 2 cut(s) 14, 245
TspDTI ATGAA 2 cut(s) 17, 788
TspRI CASTG 2 cut(s) 17, 819
Van91I CCANNNNNTGG 1 cut(s) 503
VpaK11BI GGWCC 1 cut(s) 697
XapI RAATTY 1 cut(s) 487
XmnI GAANNNNTTC 1 cut(s) 573
XspI CTAG 2 cut(s) 462, 882
ZrmI AGTACT 2 cut(s) 460, 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.