Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0011847

Physical Location & Seq

Genomic Coordinates Reverse (-)

1077855 .. 1079222

Gene Structure 1368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1018700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAAGATCCAGTGTGATGTGTGTAACAAGGACGACGCTTCGGTGTTCTGCACTGCCGACGAGGCCGCCCTCTGCGACGCCTGCGACCACCGTGTCCACCACGCCAATAAGCTCGTTTCCAAGCACCACCGTTTCTCTCTCGTCCACCCCTCGTCTAAGGAGTTCCCCGTCTGCGATATCTGTCAGGAGAGAAGAGCCTTCTTGTTTTGCCAGCAGGACAGAGCGATTCTGTGCAGGGAGTGCGACCTTCCAATTCACAACGCCAACGAGCACACCCGGAAGCACAACCGATATCTTCTTACAGGTATTAAGCTCTCCGCCACCTCCGCCCTCTACAAATCTTCGCCGCCGCGGCCAACTGTAGCAACTGCTAGTTCTGAAACCGCCTCTACCGATCTCAAAAAGCATCAACCTTCAACCAAGAAATCTGTTTCCGCCGCCTCCCCTGCAATTTCAAATCCAAACCCACCTCCTATTTCTGTCAAGAATTCAACTTCAACCGCTGCAATCGACAAAGGCGGTGGAAATTTGGTGGGTGCGACTAGTACCATATCCGAGTACTTGATAGAGACGCTTCCGGGCTGGCATGTTGAGGATTTTCTTGATTTTTCTAATACCCCGTTTGGTTTCTCTAAGGTCGACAATGATATGATGCTGTCGTTTTCGGAAACCTATCCGGAAAGCAATCTGAACTCTTTCTCGTCGGAAAATATGGGGATGTGGGTCCCACAGGCATCACAAGCACCTCCGTATCAATATTCACAGATGGGCGGTGGGTTCGTTGGCTTCGAAGAGACAAAGGAGGGTACAAACATGAAGGCCAGCAACAGAAGAATGTGGATGGATGACGGCTTCACGGTTCCTCAGATTAGTCCTCCATCTGTTGGCTCCAAGAGGTTCAGACCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000989 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009641 GO:0009791 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

304

Amino Acids

33.41

Weight (kDa)

6.82

Isoelectric Point (pI)

52.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	56 - 93	7.8e-07	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75540
fragaria_vesca	FvH4_2g38990
malus_domestica	MD08G1021000.v1.1 MD15G1018700.v1.1 MD15G1019000.v1.1
prunus_persica	Prupe.1G371100_v2.0.a1 Prupe.1G371100_v2.0.a1
pyrus_communis	pycom08g01660 pycom15g01580
rosa_chinensis	RchiOBHm_Chr6g0302091
rosa_laevigata	RLG00000011196
rosa_multiflora	Rmu_ssc0000160.1_g000008
rosa_roxburghii	Rroxscaffold_7G00166090
rosa_rugosa	Rorug06G0312300
rosa_samantha	Rh6AG424600 Rh6BG477800 Rh6CG437500 Rh6DG424500
rosa_wichuraiana	Rw6G036770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccB7I	CCANNNNNTGG	1 cut(s)	884
AccI	GTMKAC	1 cut(s)	639
AccII	CGCG	1 cut(s)	352
AccIII	TCCGGA	1 cut(s)	676
AcoI	YGGCCR	1 cut(s)	353
AcsI	RAATTY	2 cut(s)	487, 526
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	3 cut(s)	547, 560, 808
AfiI	CCNNNNNNNGG	1 cut(s)	884
AgsI	TTSAA	4 cut(s)	417, 456, 492, 498
AhlI	ACTAGT	1 cut(s)	542
AluBI	AGCT	2 cut(s)	112, 313
AluI	AGCT	2 cut(s)	112, 313
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	2 cut(s)	563, 788
Aor13HI	TCCGGA	1 cut(s)	676
AoxI	GGCC	3 cut(s)	63, 353, 819
ApeKI	GCWGC	1 cut(s)	503
ApoI	RAATTY	2 cut(s)	487, 526
Asp700I	GAANNNNTTC	1 cut(s)	695
AspS9I	GGNCC	1 cut(s)	724
AsuC2I	CCSGG	2 cut(s)	277, 579
AsuII	TTCGAA	1 cut(s)	789
AvaII	GGWCC	1 cut(s)	724
BaeI	ACNNNNGTAYC	2 cut(s)	734, 767
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	490
BccI	CCATC	3 cut(s)	760, 835, 886
BceAI	ACGGC	1 cut(s)	865
BcnI	CCSGG	2 cut(s)	277, 579
BcoDI	GTCTC	2 cut(s)	563, 788
BcuI	ACTAGT	1 cut(s)	542
BfaI	CTAG	2 cut(s)	372, 543
BfmI	CTRYAG	1 cut(s)	360
BglI	GCCNNNNNGGC	2 cut(s)	62, 352
BisI	GCNGC	6 cut(s)	66, 347, 350, 353, 438, 504
BlsI	GCNGC	6 cut(s)	67, 348, 351, 354, 439, 505
BmcAI	AGTACT	1 cut(s)	560
Bme1390I	CCNGG	2 cut(s)	277, 579
Bme18I	GGWCC	1 cut(s)	724
BmgT120I	GGNCC	1 cut(s)	724
BmiI	GGNNCC	4 cut(s)	725, 726, 861, 889
BmrFI	CCNGG	2 cut(s)	277, 579
BmsI	GCATC	3 cut(s)	415, 642, 743
Bpu14I	TTCGAA	1 cut(s)	789
BpuMI	CCSGG	2 cut(s)	277, 579
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	350
BsaWI	WCCGGW	1 cut(s)	676
Bsc4I	CCNNNNNNNGG	1 cut(s)	884
Bse1I	ACTGG	1 cut(s)	10
BseAI	TCCGGA	1 cut(s)	676
BseDI	CCNNGG	1 cut(s)	350
BseGI	GGATG	3 cut(s)	723, 846, 850
BseLI	CCNNNNNNNGG	1 cut(s)	884
BseMII	CTCAG	1 cut(s)	878
BseNI	ACTGG	1 cut(s)	10
BseXI	GCAGC	1 cut(s)	490
BsgI	GTGCAG	2 cut(s)	34, 253
Bsh1236I	CGCG	1 cut(s)	352
BshFI	GGCC	3 cut(s)	65, 355, 821
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	3 cut(s)	277, 578, 677
BslFI	GGGAC	1 cut(s)	710
BslI	CCNNNNNNNGG	1 cut(s)	884
BsmAI	GTCTC	2 cut(s)	563, 788
BsmBI	CGTCTC	1 cut(s)	563
BsmFI	GGGAC	1 cut(s)	710
BsnI	GGCC	3 cut(s)	65, 355, 821
Bsp119I	TTCGAA	1 cut(s)	789
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp13I	TCCGGA	1 cut(s)	676
Bsp143I	GATC	2 cut(s)	6, 394
BspANI	GGCC	3 cut(s)	65, 355, 821
BspCNI	CTCAG	1 cut(s)	877
BspEI	TCCGGA	1 cut(s)	676
BspFNI	CGCG	1 cut(s)	352
BspLI	GGNNCC	4 cut(s)	725, 726, 861, 889
BspQI	GCTCTTC	1 cut(s)	187
BspT104I	TTCGAA	1 cut(s)	789
BsrI	ACTGG	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	350
BssMI	GATC	2 cut(s)	6, 394
BssNI	GRCGYC	1 cut(s)	78
Bst4CI	ACNGT	4 cut(s)	92, 131, 361, 859
Bst6I	CTCTTC	2 cut(s)	187, 786
BstACI	GRCGYC	1 cut(s)	78
BstAPI	GCANNNNNTGC	1 cut(s)	240
BstBI	TTCGAA	1 cut(s)	789
BstC8I	GCNNGC	4 cut(s)	82, 212, 584, 823
BstDEI	CTNAG	3 cut(s)	156, 633, 864
BstDSI	CCRYGG	1 cut(s)	350
BstF5I	GGATG	3 cut(s)	723, 846, 850
BstFNI	CGCG	1 cut(s)	352
BstKTI	GATC	2 cut(s)	9, 397
BstMAI	GTCTC	2 cut(s)	563, 788
BstMBI	GATC	2 cut(s)	6, 394
BstMWI	GCNNNNNNNGC	7 cut(s)	62, 81, 240, 326, 352, 446, 740
BstNSI	RCATGY	1 cut(s)	590
BstSCI	CCNGG	2 cut(s)	275, 577
BstSFI	CTRYAG	1 cut(s)	360
BstUI	CGCG	1 cut(s)	352
BstV1I	GCAGC	1 cut(s)	490
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BsuRI	GGCC	3 cut(s)	65, 355, 821
BtgI	CCRYGG	1 cut(s)	350
BtsCI	GGATG	3 cut(s)	723, 846, 850
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	2 cut(s)	17, 51
Cac8I	GCNNGC	4 cut(s)	82, 212, 584, 823
Cfr13I	GGNCC	1 cut(s)	724
Cfr42I	CCGCGG	1 cut(s)	353
CseI	GACGC	3 cut(s)	44, 86, 580
Csp6I	GTAC	3 cut(s)	546, 559, 807
CspCI	CAANNNNNGTGG	2 cut(s)	502, 537
CviAII	CATG	2 cut(s)	587, 814
CviQI	GTAC	3 cut(s)	546, 559, 807
DdeI	CTNAG	3 cut(s)	156, 633, 864
DpnI	GATC	2 cut(s)	8, 396
DpnII	GATC	2 cut(s)	6, 394
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	353
Eam1104I	CTCTTC	2 cut(s)	187, 786
EarI	CTCTTC	2 cut(s)	187, 786
EciI	GGCGGA	3 cut(s)	307, 316, 424
Eco32I	GATATC	2 cut(s)	178, 293
Eco47I	GGWCC	1 cut(s)	724
EcoO109I	RGGNCCY	1 cut(s)	724
EcoRI	GAATTC	1 cut(s)	487
EcoRV	GATATC	2 cut(s)	178, 293
Esp3I	CGTCTC	1 cut(s)	563
FaeI	CATG	2 cut(s)	590, 817
FaiI	YATR	5 cut(s)	551, 588, 650, 713, 815
FaqI	GGGAC	1 cut(s)	710
FatI	CATG	2 cut(s)	586, 813
FblI	GTMKAC	1 cut(s)	639
Fnu4HI	GCNGC	6 cut(s)	66, 347, 350, 353, 438, 504
FokI	GGATG	3 cut(s)	730, 853, 857
Fsp4HI	GCNGC	6 cut(s)	66, 347, 350, 353, 438, 504
FspBI	CTAG	2 cut(s)	372, 543
GluI	GCNGC	6 cut(s)	66, 347, 350, 353, 438, 504
HaeIII	GGCC	3 cut(s)	65, 355, 821
HapII	CCGG	3 cut(s)	277, 578, 677
HgaI	GACGC	3 cut(s)	44, 86, 580
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	2 cut(s)	590, 817
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HinfI	GANTC	1 cut(s)	226
HpaII	CCGG	3 cut(s)	277, 578, 677
Hpy166II	GTNNAC	3 cut(s)	97, 145, 640
Hpy188I	TCNGA	8 cut(s)	379, 556, 667, 690, 706, 867, 902, 911
Hpy188III	TCNNGA	4 cut(s)	185, 484, 602, 677
Hpy8I	GTNNAC	3 cut(s)	97, 145, 640
Hpy99I	CGWCG	4 cut(s)	38, 62, 80, 706
HpyAV	CCTTC	4 cut(s)	208, 257, 423, 811
HpyCH4III	ACNGT	4 cut(s)	92, 131, 361, 859
HpyCH4V	TGCA	4 cut(s)	51, 234, 449, 506
HpyF10VI	GCNNNNNNNGC	7 cut(s)	62, 81, 240, 326, 352, 446, 740
HpyF3I	CTNAG	3 cut(s)	156, 633, 864
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	2 cut(s)	590, 817
KflI	GGGWCCC	1 cut(s)	724
Kpn2I	TCCGGA	1 cut(s)	676
KspI	CCGCGG	1 cut(s)	353
Kzo9I	GATC	2 cut(s)	6, 394
LguI	GCTCTTC	1 cut(s)	187
LmnI	GCTCC	1 cut(s)	893
Lsp1109I	GCAGC	1 cut(s)	490
LweI	GCATC	3 cut(s)	415, 642, 743
MaeI	CTAG	2 cut(s)	372, 543
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	2 cut(s)	8, 396
MboI	GATC	2 cut(s)	6, 394
MboII	GAAGA	6 cut(s)	16, 204, 287, 333, 803, 843
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	4 cut(s)	252, 450, 487, 526
MmeI	TCCRAC	1 cut(s)	684
MroI	TCCGGA	1 cut(s)	676
MroXI	GAANNNNTTC	1 cut(s)	695
MseI	TTAA	1 cut(s)	309
MspA1I	CMGCKG	2 cut(s)	352, 503
MspI	CCGG	3 cut(s)	277, 578, 677
MspR9I	CCNGG	2 cut(s)	277, 579
MvnI	CGCG	1 cut(s)	352
MwoI	GCNNNNNNNGC	7 cut(s)	62, 81, 240, 326, 352, 446, 740
NciI	CCSGG	2 cut(s)	277, 579
NdeII	GATC	2 cut(s)	6, 394
NlaIII	CATG	2 cut(s)	590, 817
NlaIV	GGNNCC	4 cut(s)	725, 726, 861, 889
NspI	RCATGY	1 cut(s)	590
NspV	TTCGAA	1 cut(s)	789
PciSI	GCTCTTC	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	1 cut(s)	786
PdmI	GAANNNNTTC	1 cut(s)	695
PfeI	GAWTC	1 cut(s)	226
PflMI	CCANNNNNTGG	1 cut(s)	884
PkrI	GCNGC	6 cut(s)	67, 348, 351, 354, 439, 505
PpuMI	RGGWCCY	1 cut(s)	724
Psp5II	RGGWCCY	1 cut(s)	724
PspN4I	GGNNCC	4 cut(s)	725, 726, 861, 889
PspPI	GGNCC	1 cut(s)	724
PspPPI	RGGWCCY	1 cut(s)	724
PsuI	RGATCY	1 cut(s)	6
RsaI	GTAC	3 cut(s)	547, 560, 808
RsaNI	GTAC	3 cut(s)	546, 559, 807
SacII	CCGCGG	1 cut(s)	353
SalI	GTCGAC	1 cut(s)	638
SapI	GCTCTTC	1 cut(s)	187
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	6 cut(s)	66, 347, 350, 353, 438, 504
Sau3AI	GATC	2 cut(s)	6, 394
Sau96I	GGNCC	1 cut(s)	724
ScaI	AGTACT	1 cut(s)	560
ScrFI	CCNGG	2 cut(s)	277, 579
SduI	GDGCHC	1 cut(s)	273
SfaNI	GCATC	3 cut(s)	415, 642, 743
SfcI	CTRYAG	1 cut(s)	360
Sfr303I	CCGCGG	1 cut(s)	353
SfuI	TTCGAA	1 cut(s)	789
SgrBI	CCGCGG	1 cut(s)	353
SinI	GGWCC	1 cut(s)	724
SpeI	ACTAGT	1 cut(s)	542
Sse9I	AATT	4 cut(s)	252, 450, 487, 526
SspI	AATATT	1 cut(s)	758
SspMI	CTAG	2 cut(s)	372, 543
StyD4I	CCNGG	2 cut(s)	275, 577
TaaI	ACNGT	4 cut(s)	92, 131, 361, 859
TaqI	TCGA	3 cut(s)	510, 639, 789
TasI	AATT	4 cut(s)	252, 450, 487, 526
TatI	WGTACW	1 cut(s)	558
TauI	GCSGC	5 cut(s)	68, 349, 352, 355, 440
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	2 cut(s)	17, 58
TseI	GCWGC	1 cut(s)	503
TspDTI	ATGAA	2 cut(s)	17, 830
TspGWI	ACGGA	1 cut(s)	738
TspRI	CASTG	2 cut(s)	17, 58
Van91I	CCANNNNNTGG	1 cut(s)	884
VpaK11BI	GGWCC	1 cut(s)	724
XapI	RAATTY	2 cut(s)	487, 526
XceI	RCATGY	1 cut(s)	590
XmiI	GTMKAC	1 cut(s)	639
XmnI	GAANNNNTTC	1 cut(s)	695
XspI	CTAG	2 cut(s)	372, 543
ZrmI	AGTACT	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.