Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0011847

Physical Location & Seq

Genomic Coordinates Reverse (-)

7669811 .. 7671225

Gene Structure 1415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00166090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAAGATCCAGTGTGACGTGTGCAACAAGGACGACGCGTCGGTGTTCTGCACCGCCGACGAGGCAGCTCTGTGCGACGGCTGCGACCACCGTGTCCACCACGCCAACAAGCTCGCGTCCAAACACCAACGCTTCTCGCTCATCCACCCTCCTCTTCTAAAGAGTCCCCTCTCTGCGACATCTGTCAGGTATTTTGACACACATCGATCTCATCTCAACCTACAAAAGATACTTAGTTTAGTTTGTGATTTGATTAATCTGCGTTGCTTTTCAATCTCTGATCTTGTGATGTGGGTTTTACAGGAGAGACGAGCTTTCTTGTTCTGTCAGCAGGACAGAGCAATTTTATGTAGAGAGTGTGACGGTTCGATTCACTCTGCAAACGAACATACTCAGAAGCATAATCGGTATCTTTTCACAGGGGTCAAGCTCTCTGCTACCTCAACAGTTTACCCATCTTCTGATTCTGCTGCGGTTACTGATCTCAAGCCTCAGCCTTTGATCAATAAGATGCCTATTTCAGTCTCCTCTGCTATTTCAAGTCCACCTTCAGTTCCTAAGATTTCAACTAGTACTGGTAACAGCACTAAAAATGGTGGAAATTTGCTACCAAATGATGGGGTTGGATCAATGAGTAGCATATCAGAGTACTTGACCGAGACTCTTCCGGGTTGGCACGTTGAAGAGCTTCTTGATTTTTCGTCTAACCATCCCCTTGGTTTCTGTAAGGCTGACAATGGAGCTTTACCCTTTTTCGATGATGATATCGAAAGCAATCTGAGCTCTTTCTCGTCAGAAAACATGGGGATTTGGGTCCCTCAAGCACCAAATCCTTCTCTGCAACATTCACAAATGGGGTTCAAAGAGACCACAAAGGAGGCTACAAATATGAACACGATCAAAGCCAACTGTAACAACAATTACAGATCACTGTGGAACGACGATGGCTTCACAGTTCCTCAGATTAGTCCTCCATCTGTTGGCTCCAAGAGGTCTAGGCCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000989 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009641 GO:0009791 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

335

Amino Acids

36.96

Weight (kDa)

6.49

Isoelectric Point (pI)

54.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75540
fragaria_vesca	FvH4_2g38990
malus_domestica	MD08G1021000.v1.1 MD15G1018700.v1.1 MD15G1019000.v1.1
prunus_persica	Prupe.1G371100_v2.0.a1 Prupe.1G371100_v2.0.a1
pyrus_communis	pycom08g01660 pycom15g01580
rosa_chinensis	RchiOBHm_Chr6g0302091
rosa_laevigata	RLG00000011196
rosa_multiflora	Rmu_ssc0000160.1_g000008
rosa_roxburghii	Rroxscaffold_7G00166090
rosa_rugosa	Rorug06G0312300
rosa_samantha	Rh6AG424600 Rh6BG477800 Rh6CG437500 Rh6DG424500
rosa_wichuraiana	Rw6G036770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccB7I	CCANNNNNTGG	2 cut(s)	617, 980
AccII	CGCG	2 cut(s)	38, 116
AciI	CCGC	2 cut(s)	54, 473
AclWI	GGATC	1 cut(s)	634
AcsI	RAATTY	1 cut(s)	601
AcuI	CTGAAG	1 cut(s)	534
AfaI	GTAC	2 cut(s)	574, 650
AfiI	CCNNNNNNNGG	2 cut(s)	617, 980
AflIII	ACRYGT	2 cut(s)	18, 36
AgsI	TTSAA	5 cut(s)	273, 540, 567, 683, 862
AhdI	GACNNNNNGTC	1 cut(s)	37
AhlI	ACTAGT	1 cut(s)	569
AjiI	CACGTC	1 cut(s)	19
AluBI	AGCT	7 cut(s)	68, 112, 314, 430, 688, 743, 783
AluI	AGCT	7 cut(s)	68, 112, 314, 430, 688, 743, 783
Alw21I	GWGCWC	1 cut(s)	785
Alw26I	GTCTC	4 cut(s)	301, 529, 653, 860
AlwI	GGATC	1 cut(s)	634
AoxI	GGCC	1 cut(s)	998
ApeKI	GCWGC	3 cut(s)	65, 81, 470
ApoI	RAATTY	1 cut(s)	601
AseI	ATTAAT	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	687
AspS9I	GGNCC	1 cut(s)	814
AsuC2I	CCSGG	1 cut(s)	669
AvaII	GGWCC	1 cut(s)	814
BanII	GRGCYC	1 cut(s)	785
Bbv12I	GWGCWC	1 cut(s)	785
BbvCI	CCTCAGC	1 cut(s)	492
BbvI	GCAGC	3 cut(s)	68, 77, 457
BccI	CCATC	5 cut(s)	463, 611, 717, 938, 982
BceAI	ACGGC	1 cut(s)	94
BclI	TGATCA	1 cut(s)	501
BcnI	CCSGG	1 cut(s)	669
BcoDI	GTCTC	4 cut(s)	301, 529, 653, 860
BcuI	ACTAGT	1 cut(s)	569
BfaI	CTAG	2 cut(s)	570, 996
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	3 cut(s)	66, 82, 471
BlsI	GCNGC	3 cut(s)	67, 83, 472
BmcAI	AGTACT	2 cut(s)	574, 650
Bme1390I	CCNGG	1 cut(s)	669
Bme18I	GGWCC	1 cut(s)	814
BmeRI	GACNNNNNGTC	1 cut(s)	37
BmgBI	CACGTC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	814
BmiI	GGNNCC	3 cut(s)	815, 816, 985
BmrFI	CCNGG	1 cut(s)	669
BmsI	GCATC	1 cut(s)	501
BoxI	GACNNNNGTC	1 cut(s)	182
Bpu10I	CCTNAGC	1 cut(s)	492
BpuEI	CTTGAG	2 cut(s)	470, 804
BpuMI	CCSGG	1 cut(s)	669
Bsa29I	ATCGAT	1 cut(s)	205
BsaI	GGTCTC	1 cut(s)	860
BsaJI	CCNNGG	1 cut(s)	715
Bsc4I	CCNNNNNNNGG	2 cut(s)	617, 980
Bse1I	ACTGG	2 cut(s)	10, 580
BseCI	ATCGAT	1 cut(s)	205
BseDI	CCNNGG	1 cut(s)	715
BseGI	GGATG	2 cut(s)	141, 709
BseLI	CCNNNNNNNGG	2 cut(s)	617, 980
BseMII	CTCAG	4 cut(s)	407, 506, 770, 974
BseNI	ACTGG	2 cut(s)	10, 580
BseRI	GAGGAG	2 cut(s)	141, 517
BseXI	GCAGC	3 cut(s)	68, 77, 457
BsgI	GTGCAG	1 cut(s)	34
Bsh1236I	CGCG	2 cut(s)	38, 116
BshFI	GGCC	1 cut(s)	1000
BshVI	ATCGAT	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	785
BsiSI	CCGG	1 cut(s)	668
BslFI	GGGAC	2 cut(s)	150, 800
BslI	CCNNNNNNNGG	2 cut(s)	617, 980
BsmAI	GTCTC	4 cut(s)	301, 529, 653, 860
BsmBI	CGTCTC	1 cut(s)	301
BsmFI	GGGAC	2 cut(s)	150, 800
BsnI	GGCC	1 cut(s)	1000
Bso31I	GGTCTC	1 cut(s)	860
Bsp1286I	GDGCHC	1 cut(s)	785
Bsp143I	GATC	8 cut(s)	6, 206, 280, 481, 501, 626, 897, 926
BspACI	CCGC	2 cut(s)	54, 473
BspANI	GGCC	1 cut(s)	1000
BspCNI	CTCAG	4 cut(s)	406, 505, 771, 973
BspDI	ATCGAT	1 cut(s)	205
BspFNI	CGCG	2 cut(s)	38, 116
BspLI	GGNNCC	3 cut(s)	815, 816, 985
BspPI	GGATC	1 cut(s)	634
BspQI	GCTCTTC	1 cut(s)	678
BspTNI	GGTCTC	1 cut(s)	860
BsrI	ACTGG	2 cut(s)	10, 580
BssECI	CCNNGG	1 cut(s)	715
BssMI	GATC	8 cut(s)	6, 206, 280, 481, 501, 626, 897, 926
BssT1I	CCWWGG	1 cut(s)	715
Bst4CI	ACNGT	6 cut(s)	92, 365, 448, 911, 933, 955
Bst6I	CTCTTC	3 cut(s)	159, 669, 678
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	6 cut(s)	233, 393, 492, 558, 779, 960
BstF5I	GGATG	2 cut(s)	141, 709
BstFNI	CGCG	2 cut(s)	38, 116
BstKTI	GATC	8 cut(s)	9, 209, 283, 484, 504, 629, 900, 929
BstMAI	GTCTC	4 cut(s)	301, 529, 653, 860
BstMBI	GATC	8 cut(s)	6, 206, 280, 481, 501, 626, 897, 926
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 81, 780
BstPAI	GACNNNNGTC	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	667
BstUI	CGCG	2 cut(s)	38, 116
BstV1I	GCAGC	3 cut(s)	68, 77, 457
BstX2I	RGATCY	1 cut(s)	6
BstXI	CCANNNNNNTGG	1 cut(s)	716
BstYI	RGATCY	1 cut(s)	6
Bsu15I	ATCGAT	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	1000
BsuTUI	ATCGAT	1 cut(s)	205
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	2 cut(s)	141, 709
BtsIMutI	CAGTG	2 cut(s)	17, 929
Cac8I	GCNNGC	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	814
ClaI	ATCGAT	1 cut(s)	205
CseI	GACGC	3 cut(s)	27, 44, 105
Csp6I	GTAC	2 cut(s)	573, 649
CviAII	CATG	1 cut(s)	802
CviQI	GTAC	2 cut(s)	573, 649
DdeI	CTNAG	6 cut(s)	233, 393, 492, 558, 779, 960
DpnI	GATC	8 cut(s)	8, 208, 282, 483, 503, 628, 899, 928
DpnII	GATC	8 cut(s)	6, 206, 280, 481, 501, 626, 897, 926
DrdI	GACNNNNNNGTC	1 cut(s)	92
DriI	GACNNNNNGTC	1 cut(s)	37
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eam1104I	CTCTTC	3 cut(s)	159, 669, 678
Eam1105I	GACNNNNNGTC	1 cut(s)	37
EarI	CTCTTC	3 cut(s)	159, 669, 678
Ecl136II	GAGCTC	1 cut(s)	783
Eco130I	CCWWGG	1 cut(s)	715
Eco147I	AGGCCT	1 cut(s)	1000
Eco24I	GRGCYC	1 cut(s)	785
Eco31I	GGTCTC	1 cut(s)	860
Eco32I	GATATC	1 cut(s)	766
Eco47I	GGWCC	1 cut(s)	814
Eco53kI	GAGCTC	1 cut(s)	783
Eco57I	CTGAAG	1 cut(s)	534
EcoICRI	GAGCTC	1 cut(s)	783
EcoO109I	RGGNCCY	1 cut(s)	814
EcoRV	GATATC	1 cut(s)	766
EcoT14I	CCWWGG	1 cut(s)	715
EcoT38I	GRGCYC	1 cut(s)	785
ErhI	CCWWGG	1 cut(s)	715
Esp3I	CGTCTC	1 cut(s)	301
FaeI	CATG	1 cut(s)	805
FaiI	YATR	6 cut(s)	349, 390, 402, 641, 803, 890
FalI	AAGNNNNNCTT	4 cut(s)	532, 564, 675, 707
FaqI	GGGAC	2 cut(s)	150, 800
FatI	CATG	1 cut(s)	801
FbaI	TGATCA	1 cut(s)	501
Fnu4HI	GCNGC	3 cut(s)	66, 82, 471
FokI	GGATG	2 cut(s)	128, 696
FriOI	GRGCYC	1 cut(s)	785
Fsp4HI	GCNGC	3 cut(s)	66, 82, 471
FspBI	CTAG	2 cut(s)	570, 996
GluI	GCNGC	3 cut(s)	66, 82, 471
HaeIII	GGCC	1 cut(s)	1000
HapII	CCGG	1 cut(s)	668
HgaI	GACGC	3 cut(s)	27, 44, 105
Hin1II	CATG	1 cut(s)	805
HinfI	GANTC	4 cut(s)	163, 370, 464, 661
HpaII	CCGG	1 cut(s)	668
Hpy166II	GTNNAC	3 cut(s)	97, 451, 545
Hpy188I	TCNGA	7 cut(s)	280, 396, 463, 646, 780, 796, 963
Hpy188III	TCNNGA	1 cut(s)	692
Hpy8I	GTNNAC	3 cut(s)	97, 451, 545
Hpy99I	CGWCG	5 cut(s)	38, 43, 62, 80, 944
HpyAV	CCTTC	2 cut(s)	558, 843
HpyCH4III	ACNGT	6 cut(s)	92, 365, 448, 911, 933, 955
HpyCH4IV	ACGT	2 cut(s)	18, 678
HpyCH4V	TGCA	4 cut(s)	24, 51, 380, 841
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 81, 780
HpyF3I	CTNAG	6 cut(s)	233, 393, 492, 558, 779, 960
HpySE526I	ACGT	2 cut(s)	18, 678
Hsp92II	CATG	1 cut(s)	805
KflI	GGGWCCC	1 cut(s)	814
Ksp22I	TGATCA	1 cut(s)	501
Kzo9I	GATC	8 cut(s)	6, 206, 280, 481, 501, 626, 897, 926
LguI	GCTCTTC	1 cut(s)	678
LmnI	GCTCC	2 cut(s)	740, 989
LpnPI	CCDG	7 cut(s)	23, 172, 287, 317, 405, 561, 681
Lsp1109I	GCAGC	3 cut(s)	68, 77, 457
LweI	GCATC	1 cut(s)	501
MaeI	CTAG	2 cut(s)	570, 996
MaeII	ACGT	2 cut(s)	18, 678
MaeIII	GTNAC	5 cut(s)	14, 359, 475, 578, 911
MalI	GATC	8 cut(s)	8, 208, 282, 483, 503, 628, 899, 928
MboI	GATC	8 cut(s)	6, 206, 280, 481, 501, 626, 897, 926
MboII	GAAGA	5 cut(s)	16, 146, 450, 656, 695
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	785
MluCI	AATT	3 cut(s)	342, 601, 919
MluI	ACGCGT	1 cut(s)	36
MlyI	GAGTC	2 cut(s)	172, 655
MmeI	TCCRAC	1 cut(s)	604
MroXI	GAANNNNTTC	1 cut(s)	687
MseI	TTAA	1 cut(s)	255
MspI	CCGG	1 cut(s)	668
MspR9I	CCNGG	1 cut(s)	669
MvnI	CGCG	2 cut(s)	38, 116
MwoI	GCNNNNNNNGC	3 cut(s)	62, 81, 780
NciI	CCSGG	1 cut(s)	669
NdeII	GATC	8 cut(s)	6, 206, 280, 481, 501, 626, 897, 926
NlaIII	CATG	1 cut(s)	805
NlaIV	GGNNCC	3 cut(s)	815, 816, 985
NmuCI	GTSAC	2 cut(s)	14, 359
PceI	AGGCCT	1 cut(s)	1000
PciSI	GCTCTTC	1 cut(s)	678
PdmI	GAANNNNTTC	1 cut(s)	687
PfeI	GAWTC	2 cut(s)	370, 464
PflMI	CCANNNNNTGG	2 cut(s)	617, 980
PkrI	GCNGC	3 cut(s)	67, 83, 472
PleI	GAGTC	2 cut(s)	171, 655
PpsI	GAGTC	2 cut(s)	171, 655
PpuMI	RGGWCCY	1 cut(s)	814
PshAI	GACNNNNGTC	1 cut(s)	182
PshBI	ATTAAT	1 cut(s)	255
Psp124BI	GAGCTC	1 cut(s)	785
Psp5II	RGGWCCY	1 cut(s)	814
PspN4I	GGNNCC	3 cut(s)	815, 816, 985
PspPI	GGNCC	1 cut(s)	814
PspPPI	RGGWCCY	1 cut(s)	814
PsuI	RGATCY	1 cut(s)	6
RsaI	GTAC	2 cut(s)	574, 650
RsaNI	GTAC	2 cut(s)	573, 649
SacI	GAGCTC	1 cut(s)	785
SapI	GCTCTTC	1 cut(s)	678
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	3 cut(s)	66, 82, 471
Sau3AI	GATC	8 cut(s)	6, 206, 280, 481, 501, 626, 897, 926
Sau96I	GGNCC	1 cut(s)	814
ScaI	AGTACT	2 cut(s)	574, 650
SchI	GAGTC	2 cut(s)	172, 655
ScrFI	CCNGG	1 cut(s)	669
SduI	GDGCHC	1 cut(s)	785
SfaNI	GCATC	1 cut(s)	501
SinI	GGWCC	1 cut(s)	814
SmlI	CTYRAG	2 cut(s)	485, 819
SmoI	CTYRAG	2 cut(s)	485, 819
SpeI	ACTAGT	1 cut(s)	569
Sse9I	AATT	3 cut(s)	342, 601, 919
SseBI	AGGCCT	1 cut(s)	1000
SsiI	CCGC	2 cut(s)	54, 473
SspMI	CTAG	2 cut(s)	570, 996
SstI	GAGCTC	1 cut(s)	785
StuI	AGGCCT	1 cut(s)	1000
StyD4I	CCNGG	1 cut(s)	667
StyI	CCWWGG	1 cut(s)	715
TaaI	ACNGT	6 cut(s)	92, 365, 448, 911, 933, 955
TaiI	ACGT	2 cut(s)	21, 681
TaqI	TCGA	4 cut(s)	205, 368, 756, 768
TaqII	GACCGA	1 cut(s)	671
TasI	AATT	3 cut(s)	342, 601, 919
TatI	WGTACW	2 cut(s)	572, 648
TfiI	GAWTC	2 cut(s)	370, 464
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	2 cut(s)	17, 936
TseFI	GTSAC	2 cut(s)	14, 359
TseI	GCWGC	3 cut(s)	65, 81, 470
Tsp45I	GTSAC	2 cut(s)	14, 359
TspDTI	ATGAA	2 cut(s)	17, 905
TspRI	CASTG	2 cut(s)	17, 936
Van91I	CCANNNNNTGG	2 cut(s)	617, 980
VpaK11BI	GGWCC	1 cut(s)	814
VspI	ATTAAT	1 cut(s)	255
XapI	RAATTY	1 cut(s)	601
XmnI	GAANNNNTTC	1 cut(s)	687
XspI	CTAG	2 cut(s)	570, 996
ZrmI	AGTACT	2 cut(s)	574, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.