Rorug06G0312300

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
46377567 .. 46377764
198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0312300.1

Sequence Viewer

Length: 198 bp
ATGGTCCTTATTTTGTTGTTGATTCAGATGAGTGCCAACCCAAAACCTGTCTTAGCTTATAGGGCCTTAATGGAGACGGAGAAGAGTGTTACAAATACAGCTCCGCTGCAAAGAGGACCAGTTCCGCCTTCCTCGTCCTCTTCATGCACTTACATCCCAGTAGATGGCCGTAGCGGCCACTGCGAGATTCATAAATAA

Protein Analysis

65

Amino Acids

7.04

Weight (kDa)

8.77

Isoelectric Point (pI)

72.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011847)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 164
AciI CCGC 3 cut(s) 104, 125, 174
AcoI YGGCCR 2 cut(s) 166, 175
AfiI CCNNNNNNNGG 1 cut(s) 164
AluBI AGCT 2 cut(s) 56, 101
AluI AGCT 2 cut(s) 56, 101
Alw26I GTCTC 1 cut(s) 68
AoxI GGCC 3 cut(s) 63, 166, 175
ApeKI GCWGC 1 cut(s) 106
AspS9I GGNCC 3 cut(s) 4, 63, 116
AvaII GGWCC 2 cut(s) 4, 116
BbvI GCAGC 1 cut(s) 93
BccI CCATC 1 cut(s) 158
BceAI ACGGC 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 68
BglI GCCNNNNNGGC 1 cut(s) 174
BisI GCNGC 2 cut(s) 107, 175
BlsI GCNGC 2 cut(s) 108, 176
Bme18I GGWCC 2 cut(s) 4, 116
BmgT120I GGNCC 3 cut(s) 4, 63, 116
BmrI ACTGGG 1 cut(s) 152
BmuI ACTGGG 1 cut(s) 152
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse1I ACTGG 2 cut(s) 119, 158
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 164
BseNI ACTGG 2 cut(s) 119, 158
BseXI GCAGC 1 cut(s) 93
BshFI GGCC 3 cut(s) 65, 168, 177
BslI CCNNNNNNNGG 1 cut(s) 164
BsmAI GTCTC 1 cut(s) 68
BsmBI CGTCTC 1 cut(s) 68
BsnI GGCC 3 cut(s) 65, 168, 177
BspACI CCGC 3 cut(s) 104, 125, 174
BspANI GGCC 3 cut(s) 65, 168, 177
BsrI ACTGG 2 cut(s) 119, 158
Bst6I CTCTTC 2 cut(s) 77, 145
BstDEI CTNAG 1 cut(s) 52
BstF5I GGATG 1 cut(s) 153
BstMAI GTCTC 1 cut(s) 68
BstMWI GCNNNNNNNGC 3 cut(s) 62, 174, 180
BstV1I GCAGC 1 cut(s) 93
BsuRI GGCC 3 cut(s) 65, 168, 177
BtsCI GGATG 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 178
Cfr13I GGNCC 3 cut(s) 4, 63, 116
CviAII CATG 1 cut(s) 144
CviJI RGCY 5 cut(s) 56, 65, 101, 168, 177
CviKI_1 RGCY 5 cut(s) 56, 65, 101, 168, 177
DdeI CTNAG 1 cut(s) 52
EaeI YGGCCR 2 cut(s) 166, 175
Eam1104I CTCTTC 2 cut(s) 77, 145
EarI CTCTTC 2 cut(s) 77, 145
EciI GGCGGA 1 cut(s) 114
Eco47I GGWCC 2 cut(s) 4, 116
EcoO109I RGGNCCY 1 cut(s) 63
Esp3I CGTCTC 1 cut(s) 68
FaeI CATG 1 cut(s) 147
FaiI YATR 3 cut(s) 60, 145, 192
FatI CATG 1 cut(s) 143
Fnu4HI GCNGC 2 cut(s) 107, 175
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 2 cut(s) 107, 175
GluI GCNGC 2 cut(s) 107, 175
HaeIII GGCC 3 cut(s) 65, 168, 177
Hin1II CATG 1 cut(s) 147
HinfI GANTC 2 cut(s) 22, 187
Hpy188I TCNGA 1 cut(s) 27
HpyAV CCTTC 1 cut(s) 138
HpyCH4V TGCA 2 cut(s) 109, 147
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 174, 180
HpyF3I CTNAG 1 cut(s) 52
Hsp92II CATG 1 cut(s) 147
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 3 cut(s) 60, 132, 171
Lsp1109I GCAGC 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 88
MboII GAAGA 2 cut(s) 94, 132
MnlI CCTC 3 cut(s) 107, 142, 148
MseI TTAA 1 cut(s) 68
MspA1I CMGCKG 1 cut(s) 106
MwoI GCNNNNNNNGC 3 cut(s) 62, 174, 180
NlaIII CATG 1 cut(s) 147
PfeI GAWTC 2 cut(s) 22, 187
PflMI CCANNNNNTGG 1 cut(s) 164
PkrI GCNGC 2 cut(s) 108, 176
PspPI GGNCC 3 cut(s) 4, 63, 116
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 2 cut(s) 107, 175
Sau96I GGNCC 3 cut(s) 4, 63, 116
SetI ASST 3 cut(s) 49, 58, 103
SfiI GGCCNNNNNGGCC 1 cut(s) 174
SgeI CNNG 5 cut(s) 59, 131, 145, 156, 170
SinI GGWCC 2 cut(s) 4, 116
SsiI CCGC 3 cut(s) 104, 125, 174
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 2 cut(s) 22, 187
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 1 cut(s) 185
TseI GCWGC 1 cut(s) 106
TspDTI ATGAA 2 cut(s) 132, 179
TspGWI ACGGA 1 cut(s) 92
TspRI CASTG 1 cut(s) 185
Van91I CCANNNNNTGG 1 cut(s) 164
VpaK11BI GGWCC 2 cut(s) 4, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.