Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011847

Physical Location & Seq

Genomic Coordinates Reverse (-)

33832435 .. 33834269

Gene Structure 1835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G371100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGAAGATTCAGTGTGATGTATGTAACAAGGACGATGCCTCGGTGTTCTGCACCGCCGACGAGGCAGCTCTCTGCGACACCTGTGACCACCGAGTCCACCATGCCAATAAGCTCGCTTCCAAACACCAACGCTTCTCTCTTATTCACCCCTCATCAAAACAATTCCCTGTCTGCGATATCTGTCAGGAGAGAAGAGCTTTCTTGTTTTGTCAGCAGGACAGAGCGATTCTATGCAGAGAGTGCGACCTTCCGGTTCACGCGGCCAACGAGCACACCCAGAAGCACAGCAGATTTCTTCTCACAGGGGTCAAGATCTCTGCTACATCTACGCTTTACACATCTTCATCCCCGCCCACTCCAACAATTAGCCTTAAATCTGCTGACGCTACTGTTACTGATCCAAAGCCTCAACCTTTAATAAAAAAGTCTGTTTCTACTTCCGCCCCTGCAATTTCAAACCCACCTTCCATGTCCAAGAACTCAACTTTAACCACCAACACAGCCAATAGCAATAAAGGTGGTGGAATATTCGTAGCTCATGACGGGGTTGGTTGTGGTTCAACGAGTAGCATATCAGAGTACTTGATAGAGACGCTTCCGGGTTGGCATGTTGAGGACTTTCTTGATTTTTCTTCCGGTCCCCTTGGTTTCTGTAAGGCTGATAATGAGACGGTGTTGCCGTTTATGGATGCTGATCTTGAAAGCAATCTGAGTTCTTTCTCATCAGAACATATGGGAATTTGGGTTCCTCAAGCATCAAATCCTCTGCATCAATACTCACAGATGGGTGGTGAGCTCATTGGGTTAAATAAGGATGGTACAAACATGAAAGCCAACAACAGAACGTGGAGGGATGATAGCTTCACAGTTCCTCAGATCAGTACTCCATCTGTTGGCTCCAGGAGGTCCAGACCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000989 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009641 GO:0009791 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

307

Amino Acids

33.32

Weight (kDa)

6.44

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75540
fragaria_vesca	FvH4_2g38990
malus_domestica	MD08G1021000.v1.1 MD15G1018700.v1.1 MD15G1019000.v1.1
prunus_persica	Prupe.1G371100_v2.0.a1 Prupe.1G371100_v2.0.a1
pyrus_communis	pycom08g01660 pycom15g01580
rosa_chinensis	RchiOBHm_Chr6g0302091
rosa_laevigata	RLG00000011196
rosa_multiflora	Rmu_ssc0000160.1_g000008
rosa_roxburghii	Rroxscaffold_7G00166090
rosa_rugosa	Rorug06G0312300
rosa_samantha	Rh6AG424600 Rh6BG477800 Rh6CG437500 Rh6DG424500
rosa_wichuraiana	Rw6G036770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccB7I	CCANNNNNTGG	1 cut(s)	893
AccII	CGCG	1 cut(s)	260
AciI	CCGC	4 cut(s)	54, 260, 350, 441
AclWI	GGATC	1 cut(s)	392
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	738
AfaI	GTAC	3 cut(s)	581, 820, 883
AfiI	CCNNNNNNNGG	1 cut(s)	893
AgsI	TTSAA	3 cut(s)	456, 561, 701
AjnI	CCWGG	1 cut(s)	899
AloI	GAACNNNNNNTCC	2 cut(s)	729, 761
AluBI	AGCT	6 cut(s)	68, 112, 197, 536, 796, 861
AluI	AGCT	6 cut(s)	68, 112, 197, 536, 796, 861
Alw21I	GWGCWC	2 cut(s)	273, 798
Alw26I	GTCTC	2 cut(s)	584, 662
AlwI	GGATC	1 cut(s)	392
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	738
AspS9I	GGNCC	2 cut(s)	638, 906
AsuC2I	CCSGG	1 cut(s)	600
AsuHPI	GGTGA	2 cut(s)	137, 803
AvaII	GGWCC	2 cut(s)	638, 906
BanII	GRGCYC	1 cut(s)	798
Bbv12I	GWGCWC	2 cut(s)	273, 798
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	3 cut(s)	778, 809, 895
BceAI	ACGGC	1 cut(s)	664
BciT130I	CCWGG	1 cut(s)	901
BcnI	CCSGG	1 cut(s)	600
BcoDI	GTCTC	2 cut(s)	584, 662
BglI	GCCNNNNNGGC	1 cut(s)	62
BglII	AGATCT	1 cut(s)	312
BisI	GCNGC	2 cut(s)	66, 261
BlsI	GCNGC	2 cut(s)	67, 262
BmcAI	AGTACT	2 cut(s)	581, 883
Bme1390I	CCNGG	2 cut(s)	600, 901
Bme18I	GGWCC	2 cut(s)	638, 906
BmgT120I	GGNCC	2 cut(s)	638, 906
BmiI	GGNNCC	3 cut(s)	640, 747, 898
BmrFI	CCNGG	2 cut(s)	600, 901
BmsI	GCATC	4 cut(s)	25, 679, 764, 778
BpmI	CTGGAG	1 cut(s)	883
BpuEI	CTTGAG	1 cut(s)	735
BpuMI	CCSGG	1 cut(s)	600
BsaBI	GATNNNNATC	1 cut(s)	693
BsaJI	CCNNGG	2 cut(s)	39, 643
BsaWI	WCCGGW	2 cut(s)	250, 635
Bsc4I	CCNNNNNNNGG	1 cut(s)	893
Bse8I	GATNNNNATC	1 cut(s)	693
BseBI	CCWGG	1 cut(s)	901
BseDI	CCNNGG	2 cut(s)	39, 643
BseGI	GGATG	4 cut(s)	344, 694, 820, 859
BseJI	GATNNNNATC	1 cut(s)	693
BseLI	CCNNNNNNNGG	1 cut(s)	893
BseMII	CTCAG	2 cut(s)	701, 887
BseXI	GCAGC	1 cut(s)	77
BsgI	GTGCAG	1 cut(s)	34
Bsh1236I	CGCG	1 cut(s)	260
BshFI	GGCC	1 cut(s)	263
BsiHKAI	GWGCWC	2 cut(s)	273, 798
BsiSI	CCGG	3 cut(s)	251, 599, 636
BslFI	GGGAC	1 cut(s)	624
BslI	CCNNNNNNNGG	1 cut(s)	893
BsmAI	GTCTC	2 cut(s)	584, 662
BsmBI	CGTCTC	2 cut(s)	584, 662
BsmFI	GGGAC	1 cut(s)	624
BsnI	GGCC	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	273, 798
Bsp143I	GATC	4 cut(s)	312, 397, 694, 876
BspACI	CCGC	4 cut(s)	54, 260, 350, 441
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	2 cut(s)	702, 886
BspFNI	CGCG	1 cut(s)	260
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	3 cut(s)	640, 747, 898
BspPI	GGATC	1 cut(s)	392
BspQI	GCTCTTC	1 cut(s)	187
BssECI	CCNNGG	2 cut(s)	39, 643
BssMI	GATC	4 cut(s)	312, 397, 694, 876
BssT1I	CCWWGG	1 cut(s)	643
Bst2UI	CCWGG	1 cut(s)	901
Bst4CI	ACNGT	3 cut(s)	391, 673, 868
Bst6I	CTCTTC	1 cut(s)	187
BstAPI	GCANNNNNTGC	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	710, 873
BstF5I	GGATG	4 cut(s)	344, 694, 820, 859
BstFNI	CGCG	1 cut(s)	260
BstKTI	GATC	4 cut(s)	315, 400, 697, 879
BstMAI	GTCTC	2 cut(s)	584, 662
BstMBI	GATC	4 cut(s)	312, 397, 694, 876
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 240
BstNI	CCWGG	1 cut(s)	901
BstNSI	RCATGY	1 cut(s)	611
BstSCI	CCNGG	2 cut(s)	598, 899
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	77
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	263
BtsCI	GGATG	4 cut(s)	344, 694, 820, 859
BtsIMutI	CAGTG	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	114
CciI	TCATGA	1 cut(s)	538
Cfr13I	GGNCC	2 cut(s)	638, 906
CseI	GACGC	2 cut(s)	392, 601
Csp6I	GTAC	3 cut(s)	580, 819, 882
CspCI	CAANNNNNGTGG	2 cut(s)	499, 534
CviAII	CATG	5 cut(s)	101, 469, 539, 608, 826
CviQI	GTAC	3 cut(s)	580, 819, 882
DdeI	CTNAG	2 cut(s)	710, 873
DpnI	GATC	4 cut(s)	314, 399, 696, 878
DpnII	GATC	4 cut(s)	312, 397, 694, 876
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
EciI	GGCGGA	1 cut(s)	430
Ecl136II	GAGCTC	1 cut(s)	796
Eco130I	CCWWGG	1 cut(s)	643
Eco24I	GRGCYC	1 cut(s)	798
Eco32I	GATATC	1 cut(s)	178
Eco47I	GGWCC	2 cut(s)	638, 906
Eco53kI	GAGCTC	1 cut(s)	796
EcoICRI	GAGCTC	1 cut(s)	796
EcoRII	CCWGG	1 cut(s)	899
EcoRV	GATATC	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	643
EcoT38I	GRGCYC	1 cut(s)	798
ErhI	CCWWGG	1 cut(s)	643
Esp3I	CGTCTC	2 cut(s)	584, 662
FaeI	CATG	5 cut(s)	104, 472, 542, 611, 829
FaqI	GGGAC	1 cut(s)	624
FatI	CATG	5 cut(s)	100, 468, 538, 607, 825
FauI	CCCGC	1 cut(s)	357
FauNDI	CATATG	1 cut(s)	732
Fnu4HI	GCNGC	2 cut(s)	66, 261
FokI	GGATG	4 cut(s)	331, 701, 827, 866
FriOI	GRGCYC	1 cut(s)	798
Fsp4HI	GCNGC	2 cut(s)	66, 261
GluI	GCNGC	2 cut(s)	66, 261
GsuI	CTGGAG	1 cut(s)	883
HaeIII	GGCC	1 cut(s)	263
HapII	CCGG	3 cut(s)	251, 599, 636
HgaI	GACGC	2 cut(s)	392, 601
Hin1II	CATG	5 cut(s)	104, 472, 542, 611, 829
HinfI	GANTC	3 cut(s)	7, 93, 226
HpaII	CCGG	3 cut(s)	251, 599, 636
HphI	GGTGA	2 cut(s)	137, 803
Hpy166II	GTNNAC	2 cut(s)	97, 256
Hpy188I	TCNGA	4 cut(s)	577, 711, 727, 876
Hpy188III	TCNNGA	6 cut(s)	185, 310, 539, 623, 698, 909
Hpy8I	GTNNAC	2 cut(s)	97, 256
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	257, 474
HpyCH4III	ACNGT	3 cut(s)	391, 673, 868
HpyCH4IV	ACGT	1 cut(s)	845
HpyCH4V	TGCA	4 cut(s)	51, 234, 449, 769
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 240
HpyF3I	CTNAG	2 cut(s)	710, 873
HpySE526I	ACGT	1 cut(s)	845
Hsp92II	CATG	5 cut(s)	104, 472, 542, 611, 829
Kzo9I	GATC	4 cut(s)	312, 397, 694, 876
LguI	GCTCTTC	1 cut(s)	187
LmnI	GCTCC	1 cut(s)	902
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	4 cut(s)	25, 679, 764, 778
MaeII	ACGT	1 cut(s)	845
MaeIII	GTNAC	3 cut(s)	23, 83, 391
MalI	GATC	4 cut(s)	314, 399, 696, 878
MboI	GATC	4 cut(s)	312, 397, 694, 876
MboII	GAAGA	5 cut(s)	16, 204, 287, 333, 624
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	2 cut(s)	273, 798
MluCI	AATT	4 cut(s)	161, 363, 450, 738
MlyI	GAGTC	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	383
MseI	TTAA	4 cut(s)	372, 416, 488, 806
MspI	CCGG	3 cut(s)	251, 599, 636
MspR9I	CCNGG	2 cut(s)	600, 901
MvaI	CCWGG	1 cut(s)	901
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	2 cut(s)	62, 240
NciI	CCSGG	1 cut(s)	600
NdeI	CATATG	1 cut(s)	732
NdeII	GATC	4 cut(s)	312, 397, 694, 876
NlaIII	CATG	5 cut(s)	104, 472, 542, 611, 829
NlaIV	GGNNCC	3 cut(s)	640, 747, 898
NmuCI	GTSAC	1 cut(s)	83
NspI	RCATGY	1 cut(s)	611
PagI	TCATGA	1 cut(s)	538
PciSI	GCTCTTC	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	2 cut(s)	264, 677
PfeI	GAWTC	2 cut(s)	7, 226
PflMI	CCANNNNNTGG	1 cut(s)	893
PfoI	TCCNGGA	1 cut(s)	899
PkrI	GCNGC	2 cut(s)	67, 262
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Psp124BI	GAGCTC	1 cut(s)	798
Psp6I	CCWGG	1 cut(s)	899
PspGI	CCWGG	1 cut(s)	899
PspN4I	GGNNCC	3 cut(s)	640, 747, 898
PspPI	GGNCC	2 cut(s)	638, 906
PsuI	RGATCY	1 cut(s)	312
RsaI	GTAC	3 cut(s)	581, 820, 883
RsaNI	GTAC	3 cut(s)	580, 819, 882
SacI	GAGCTC	1 cut(s)	798
SapI	GCTCTTC	1 cut(s)	187
SaqAI	TTAA	4 cut(s)	372, 416, 488, 806
SatI	GCNGC	2 cut(s)	66, 261
Sau3AI	GATC	4 cut(s)	312, 397, 694, 876
Sau96I	GGNCC	2 cut(s)	638, 906
ScaI	AGTACT	2 cut(s)	581, 883
SchI	GAGTC	1 cut(s)	102
ScrFI	CCNGG	2 cut(s)	600, 901
SduI	GDGCHC	2 cut(s)	273, 798
SfaNI	GCATC	4 cut(s)	25, 679, 764, 778
SinI	GGWCC	2 cut(s)	638, 906
SmlI	CTYRAG	1 cut(s)	750
SmoI	CTYRAG	1 cut(s)	750
Sse9I	AATT	4 cut(s)	161, 363, 450, 738
SsiI	CCGC	4 cut(s)	54, 260, 350, 441
SspI	AATATT	1 cut(s)	528
SstI	GAGCTC	1 cut(s)	798
StyD4I	CCNGG	2 cut(s)	598, 899
StyI	CCWWGG	1 cut(s)	643
TaaI	ACNGT	3 cut(s)	391, 673, 868
TaiI	ACGT	1 cut(s)	848
TasI	AATT	4 cut(s)	161, 363, 450, 738
TatI	WGTACW	2 cut(s)	579, 881
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	2 cut(s)	7, 226
Tru1I	TTAA	4 cut(s)	372, 416, 488, 806
Tru9I	TTAA	4 cut(s)	372, 416, 488, 806
TscAI	CASTG	1 cut(s)	17
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	3 cut(s)	17, 333, 842
TspRI	CASTG	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	893
VpaK11BI	GGWCC	2 cut(s)	638, 906
XapI	RAATTY	1 cut(s)	738
XceI	RCATGY	1 cut(s)	611
ZrmI	AGTACT	2 cut(s)	581, 883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.