Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0011847

Physical Location & Seq

Genomic Coordinates Reverse (-)

1517627 .. 1518963

Gene Structure 1337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1021000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGAAGATCCAGTGTGATGTGTGTAACAAGGACGACGCCTCGGTGTTCTGCACCGCCGACGAGGCCGCCCTCTGCGACGCCTGTGACCACCGTGTCCACCATGCCAATAAGCTCGCCTCCAAGCACCACCGCTTCTCTCTCATCCACCCCTCCTCTAAGGAGTTCCCCGTCTGTGATATCTGTCAGGAGAGAAGAGCCTTCTTGTTTTGTCAGCAGGACAGAGCGATTCTCTGCAGGGAGTGCGACCTTTCAATTCACAACGCCAACGAGCACACCCTGAAGCACAACCGATTTCTTCTAACAGGTATTAAGCTCTCCGCCACCTCCGCCCTTTACGAATCTCCACCGCCGCCAACTGTAGCAACTGCTAGTTCTGAAACCGCCGCTACCGATCTCAAAAAGCATCAACCTTTGACCAAGGAATCTGTATCCTCCCCCTCCCCTCCAATTTCAAATCCCTACCCACCTCCAGTTGCTGCCAAGAATTCAACTTCAACCGCTGCAGTCAACAAAGGCGGTGGAAATTTGGTGGGTGCGACTAGTAGCATATCGGAGTACTTGATAGAGACGCTTCCGGGCTGGCACGTTGAGGACTTTCTTGATTTTTCTTCTGCCCCCTTTGGTTTCTCTAAGGCCGACAACGATATGATGCTGCCGTTTTCCGATGCCTATCCGGGAAGCAATCTGAACTCTTTCTCATCGGAAAATATGGGGATGTGGGTCCCGCAGGCACCGCAAGCTCCTCCGCATCAGTATTCACAGGTGGGCGGTGGGTTCGTCGGGTTCAAAGAGACAAAGGAGGGTACAAACATGAATGCCGGCAAAAGACTCTGGATGGACGATGGCTTCACAGTTCCTCAGATCAGTCCTCCGTCTCTTGGCTCCAAGAGGTTCAGACCTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000989 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009641 GO:0009791 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

302

Amino Acids

32.75

Weight (kDa)

6.3

Isoelectric Point (pI)

57.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	56 - 93	1.8e-07	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75540
fragaria_vesca	FvH4_2g38990
malus_domestica	MD08G1021000.v1.1 MD15G1018700.v1.1 MD15G1019000.v1.1
prunus_persica	Prupe.1G371100_v2.0.a1 Prupe.1G371100_v2.0.a1
pyrus_communis	pycom08g01660 pycom15g01580
rosa_chinensis	RchiOBHm_Chr6g0302091
rosa_laevigata	RLG00000011196
rosa_multiflora	Rmu_ssc0000160.1_g000008
rosa_roxburghii	Rroxscaffold_7G00166090
rosa_rugosa	Rorug06G0312300
rosa_samantha	Rh6AG424600 Rh6BG477800 Rh6CG437500 Rh6DG424500
rosa_wichuraiana	Rw6G036770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccB1I	GGYRCC	1 cut(s)	730
AcsI	RAATTY	2 cut(s)	484, 523
AcuI	CTGAAG	1 cut(s)	299
AcyI	GRCGYC	2 cut(s)	36, 78
AfaI	GTAC	2 cut(s)	557, 805
AfiI	CCNNNNNNNGG	1 cut(s)	878
AgsI	TTSAA	5 cut(s)	252, 453, 489, 495, 787
AhlI	ACTAGT	1 cut(s)	539
AluBI	AGCT	3 cut(s)	112, 313, 740
AluI	AGCT	3 cut(s)	112, 313, 740
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	3 cut(s)	560, 785, 879
AlwNI	CAGNNNCTG	1 cut(s)	476
AoxI	GGCC	2 cut(s)	63, 633
ApeKI	GCWGC	3 cut(s)	476, 500, 652
ApoI	RAATTY	2 cut(s)	484, 523
Asp700I	GAANNNNTTC	1 cut(s)	692
AspS9I	GGNCC	1 cut(s)	721
AsuC2I	CCSGG	2 cut(s)	576, 675
AvaII	GGWCC	1 cut(s)	721
BanI	GGYRCC	1 cut(s)	730
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	3 cut(s)	463, 487, 639
BccI	CCATC	2 cut(s)	829, 836
BceAI	ACGGC	1 cut(s)	640
BciVI	GTATCC	1 cut(s)	439
BcnI	CCSGG	2 cut(s)	576, 675
BcoDI	GTCTC	3 cut(s)	560, 785, 879
BcuI	ACTAGT	1 cut(s)	539
BfaI	CTAG	2 cut(s)	369, 540
BfmI	CTRYAG	3 cut(s)	232, 357, 501
BfuI	GTATCC	1 cut(s)	439
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	6 cut(s)	66, 350, 384, 477, 501, 653
BlsI	GCNGC	6 cut(s)	67, 351, 385, 478, 502, 654
BmcAI	AGTACT	1 cut(s)	557
Bme1390I	CCNGG	2 cut(s)	576, 675
Bme18I	GGWCC	1 cut(s)	721
BmgT120I	GGNCC	1 cut(s)	721
BmiI	GGNNCC	4 cut(s)	722, 723, 732, 883
BmrFI	CCNGG	2 cut(s)	576, 675
BmsI	GCATC	4 cut(s)	412, 639, 655, 757
BplI	GAGNNNNNCTC	2 cut(s)	213, 245
BpmI	CTGGAG	1 cut(s)	453
BpuMI	CCSGG	2 cut(s)	576, 675
BsaBI	GATNNNNATC	1 cut(s)	669
BsaHI	GRCGYC	2 cut(s)	36, 78
BsaJI	CCNNGG	2 cut(s)	39, 417
Bsc4I	CCNNNNNNNGG	1 cut(s)	878
Bse118I	RCCGGY	1 cut(s)	818
Bse1I	ACTGG	2 cut(s)	10, 470
Bse8I	GATNNNNATC	1 cut(s)	669
BseDI	CCNNGG	2 cut(s)	39, 417
BseGI	GGATG	3 cut(s)	141, 720, 840
BseJI	GATNNNNATC	1 cut(s)	669
BseLI	CCNNNNNNNGG	1 cut(s)	878
BseMII	CTCAG	1 cut(s)	872
BseNI	ACTGG	2 cut(s)	10, 470
BseRI	GAGGAG	2 cut(s)	142, 732
BseXI	GCAGC	3 cut(s)	463, 487, 639
BsgI	GTGCAG	1 cut(s)	34
BshFI	GGCC	2 cut(s)	65, 635
BshNI	GGYRCC	1 cut(s)	730
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	3 cut(s)	575, 674, 819
BslFI	GGGAC	1 cut(s)	707
BslI	CCNNNNNNNGG	1 cut(s)	878
BsmAI	GTCTC	3 cut(s)	560, 785, 879
BsmBI	CGTCTC	2 cut(s)	560, 879
BsmFI	GGGAC	1 cut(s)	707
BsmI	GAATGC	1 cut(s)	820
BsnI	GGCC	2 cut(s)	65, 635
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	3 cut(s)	6, 391, 861
BspANI	GGCC	2 cut(s)	65, 635
BspCNI	CTCAG	1 cut(s)	871
BspLI	GGNNCC	4 cut(s)	722, 723, 732, 883
BspMAI	CTGCAG	2 cut(s)	236, 505
BspQI	GCTCTTC	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	730
BsrFI	RCCGGY	1 cut(s)	818
BsrI	ACTGG	2 cut(s)	10, 470
BssAI	RCCGGY	1 cut(s)	818
BssECI	CCNNGG	2 cut(s)	39, 417
BssMI	GATC	3 cut(s)	6, 391, 861
BssNI	GRCGYC	2 cut(s)	36, 78
BssT1I	CCWWGG	1 cut(s)	417
Bst4CI	ACNGT	3 cut(s)	92, 358, 853
Bst6I	CTCTTC	1 cut(s)	187
BstACI	GRCGYC	2 cut(s)	36, 78
BstAPI	GCANNNNNTGC	1 cut(s)	240
BstC8I	GCNNGC	5 cut(s)	114, 581, 729, 738, 820
BstDEI	CTNAG	3 cut(s)	156, 630, 858
BstF5I	GGATG	3 cut(s)	141, 720, 840
BstKTI	GATC	3 cut(s)	9, 394, 864
BstMAI	GTCTC	3 cut(s)	560, 785, 879
BstMBI	GATC	3 cut(s)	6, 391, 861
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 240, 326, 733, 737
BstSCI	CCNGG	2 cut(s)	574, 673
BstSFI	CTRYAG	3 cut(s)	232, 357, 501
BstV1I	GCAGC	3 cut(s)	463, 487, 639
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BsuI	GTATCC	1 cut(s)	439
BsuRI	GGCC	2 cut(s)	65, 635
BtsCI	GGATG	3 cut(s)	141, 720, 840
BtsIMutI	CAGTG	1 cut(s)	17
Cac8I	GCNNGC	5 cut(s)	114, 581, 729, 738, 820
CaiI	CAGNNNCTG	1 cut(s)	476
Cfr10I	RCCGGY	1 cut(s)	818
Cfr13I	GGNCC	1 cut(s)	721
CseI	GACGC	3 cut(s)	44, 86, 577
Csp6I	GTAC	2 cut(s)	556, 804
CspCI	CAANNNNNGTGG	2 cut(s)	499, 534
CviAII	CATG	2 cut(s)	101, 811
CviJI	RGCY	9 cut(s)	65, 112, 197, 313, 579, 635, 740, 846, 882
CviKI_1	RGCY	9 cut(s)	65, 112, 197, 313, 579, 635, 740, 846, 882
CviQI	GTAC	2 cut(s)	556, 804
DdeI	CTNAG	3 cut(s)	156, 630, 858
DpnI	GATC	3 cut(s)	8, 393, 863
DpnII	GATC	3 cut(s)	6, 391, 861
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
EciI	GGCGGA	2 cut(s)	307, 316
Eco130I	CCWWGG	1 cut(s)	417
Eco32I	GATATC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	721
Eco57I	CTGAAG	1 cut(s)	299
EcoO109I	RGGNCCY	1 cut(s)	721
EcoRI	GAATTC	1 cut(s)	484
EcoRV	GATATC	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	417
Esp3I	CGTCTC	2 cut(s)	560, 879
FaeI	CATG	2 cut(s)	104, 814
FaiI	YATR	6 cut(s)	102, 548, 647, 710, 812, 904
FaqI	GGGAC	1 cut(s)	707
FatI	CATG	2 cut(s)	100, 810
FauI	CCCGC	1 cut(s)	732
Fnu4HI	GCNGC	6 cut(s)	66, 350, 384, 477, 501, 653
FokI	GGATG	3 cut(s)	128, 727, 847
Fsp4HI	GCNGC	6 cut(s)	66, 350, 384, 477, 501, 653
FspBI	CTAG	2 cut(s)	369, 540
GluI	GCNGC	6 cut(s)	66, 350, 384, 477, 501, 653
GsuI	CTGGAG	1 cut(s)	453
HaeIII	GGCC	2 cut(s)	65, 635
HapII	CCGG	3 cut(s)	575, 674, 819
HgaI	GACGC	3 cut(s)	44, 86, 577
Hin1I	GRCGYC	2 cut(s)	36, 78
Hin1II	CATG	2 cut(s)	104, 814
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HinfI	GANTC	4 cut(s)	226, 338, 422, 828
HpaII	CCGG	3 cut(s)	575, 674, 819
Hpy166II	GTNNAC	2 cut(s)	97, 508
Hpy188I	TCNGA	7 cut(s)	376, 553, 664, 687, 703, 861, 896
Hpy188III	TCNNGA	3 cut(s)	185, 599, 832
Hpy8I	GTNNAC	2 cut(s)	97, 508
Hpy99I	CGWCG	4 cut(s)	38, 62, 80, 782
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	3 cut(s)	92, 358, 853
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	3 cut(s)	51, 234, 503
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 240, 326, 733, 737
HpyF3I	CTNAG	3 cut(s)	156, 630, 858
HpySE526I	ACGT	1 cut(s)	585
Hsp92I	GRCGYC	2 cut(s)	36, 78
Hsp92II	CATG	2 cut(s)	104, 814
KflI	GGGWCCC	1 cut(s)	721
KroI	GCCGGC	1 cut(s)	818
KroNI	GCCGGC	1 cut(s)	820
Kzo9I	GATC	3 cut(s)	6, 391, 861
LguI	GCTCTTC	1 cut(s)	187
LmnI	GCTCC	2 cut(s)	745, 887
Lsp1109I	GCAGC	3 cut(s)	463, 487, 639
LweI	GCATC	4 cut(s)	412, 639, 655, 757
MaeI	CTAG	2 cut(s)	369, 540
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	2 cut(s)	23, 83
MalI	GATC	3 cut(s)	8, 393, 863
MboI	GATC	3 cut(s)	6, 391, 861
MboII	GAAGA	4 cut(s)	16, 204, 287, 600
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	4 cut(s)	252, 447, 484, 523
MlyI	GAGTC	1 cut(s)	822
MroNI	GCCGGC	1 cut(s)	818
MroXI	GAANNNNTTC	1 cut(s)	692
MseI	TTAA	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	3 cut(s)	575, 674, 819
MspR9I	CCNGG	2 cut(s)	576, 675
Mva1269I	GAATGC	1 cut(s)	820
MwoI	GCNNNNNNNGC	5 cut(s)	62, 240, 326, 733, 737
NaeI	GCCGGC	1 cut(s)	820
NciI	CCSGG	2 cut(s)	576, 675
NdeII	GATC	3 cut(s)	6, 391, 861
NgoMIV	GCCGGC	1 cut(s)	818
NlaIII	CATG	2 cut(s)	104, 814
NlaIV	GGNNCC	4 cut(s)	722, 723, 732, 883
NmuCI	GTSAC	1 cut(s)	83
PciSI	GCTCTTC	1 cut(s)	187
PctI	GAATGC	1 cut(s)	820
PdiI	GCCGGC	1 cut(s)	820
PdmI	GAANNNNTTC	1 cut(s)	692
PfeI	GAWTC	3 cut(s)	226, 338, 422
PfoI	TCCNGGA	1 cut(s)	673
PkrI	GCNGC	6 cut(s)	67, 351, 385, 478, 502, 654
PleI	GAGTC	1 cut(s)	822
PpsI	GAGTC	1 cut(s)	822
PpuMI	RGGWCCY	1 cut(s)	721
Psp5II	RGGWCCY	1 cut(s)	721
PspN4I	GGNNCC	4 cut(s)	722, 723, 732, 883
PspPI	GGNCC	1 cut(s)	721
PspPPI	RGGWCCY	1 cut(s)	721
PstI	CTGCAG	2 cut(s)	236, 505
PstNI	CAGNNNCTG	1 cut(s)	476
PsuI	RGATCY	1 cut(s)	6
RsaI	GTAC	2 cut(s)	557, 805
RsaNI	GTAC	2 cut(s)	556, 804
SapI	GCTCTTC	1 cut(s)	187
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	6 cut(s)	66, 350, 384, 477, 501, 653
Sau3AI	GATC	3 cut(s)	6, 391, 861
Sau96I	GGNCC	1 cut(s)	721
ScaI	AGTACT	1 cut(s)	557
SchI	GAGTC	1 cut(s)	822
ScrFI	CCNGG	2 cut(s)	576, 675
SduI	GDGCHC	1 cut(s)	273
SfaNI	GCATC	4 cut(s)	412, 639, 655, 757
SfcI	CTRYAG	3 cut(s)	232, 357, 501
SinI	GGWCC	1 cut(s)	721
SpeI	ACTAGT	1 cut(s)	539
Sse9I	AATT	4 cut(s)	252, 447, 484, 523
SspMI	CTAG	2 cut(s)	369, 540
StyD4I	CCNGG	2 cut(s)	574, 673
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	3 cut(s)	92, 358, 853
TaiI	ACGT	1 cut(s)	588
TasI	AATT	4 cut(s)	252, 447, 484, 523
TatI	WGTACW	1 cut(s)	555
TauI	GCSGC	3 cut(s)	68, 352, 386
TfiI	GAWTC	3 cut(s)	226, 338, 422
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	17
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	3 cut(s)	476, 500, 652
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	2 cut(s)	17, 827
TspGWI	ACGGA	1 cut(s)	861
TspRI	CASTG	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	721
XapI	RAATTY	2 cut(s)	484, 523
XmnI	GAANNNNTTC	1 cut(s)	692
XspI	CTAG	2 cut(s)	369, 540
ZrmI	AGTACT	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.