FvH4_2g39680

Redoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017254
Physical Location & Seq
Reverse (-)
28430096 .. 28430821
726 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39680.t1

Sequence Viewer

Length: 726 bp
ATGGCAGCCTCTATCAACAACATTGCAGCTACCTTCGCCACCGTCCCGGTCACCTCATCCTCCTCCTCATCATCATCCTCCTCAAATCCTCACCAAACCAAATTCTCAATCTCAACCTCCCACAAATCCATCTCCGCCTCCTGTACCCACCGCAAACCCAACTTCAGGGCCCAACCCTCCCCCTTTCTCAGCCTCTACGGCCCGCCTGGCCCACCACCCGATCGGCCCATTTCCGCCACCACGATCACCAAACCAACCAAACTCCTCTTCTCAGTCGGCGATAAGCTCCCCAACGCTTCCCTCCCGTACCTCGCGCGAAACGACGTCGTTAAGTCTATCACTCTCTCCAGCCTCTGTAAGGGAAAGAGAGTCGTTTTGGTGGGCGTAACGGCGCCGTTCTCGCCGAGCTGCACGCGCTTCGTCAAACGCGTTGAATCGGCGAGGGAGAAAAATGCGCAGGTGATCGCGTGCTTCGCGGTCAGCGATGTTTTCGTGATGCGGGCCTGGGGAGAGAGCCTGGCCGTTGGTGAGAGGGTGATGATGTTGTGTGATGGGGTAGGAGAGCTGACCAGGGCACTTGGGGTCTCTTTCAACCAAACCGGTCGACCTTGTTTGGGTTTAGGTGAACGGTCCAGGAGGTTTTGCCTGGCTGCTTTTAACGGCGTCATCACAAACGTTGACTATGACGAAGAAGATGAAGAAGACGCCCTCATTTCTACCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Redoxin

Protein Analysis

242

Amino Acids

25.76

Weight (kDa)

9.28

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Redoxin PF08534 92 - 233 9.2e-19 Redoxin
AhpC-TSA PF00578 92 - 200 3e-09 AhpC/TSA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g39680
prunus_persica Prupe.1G378100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0301191
rosa_laevigata RLG00000011269
rosa_multiflora Rmu_sc0002592.1_g000003
rosa_roxburghii Rroxscaffold_171G00441350 Rroxscaffold_7G00167060
rosa_rugosa Rorug06G0302300
rosa_samantha Rh6AG415600 Rh6BG422500 Rh6CG430100 Rh6DG415400 Rh6DG415500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 448
AatII GACGTC 1 cut(s) 327
Acc16I TGCGCA 1 cut(s) 456
Acc36I ACCTGC 1 cut(s) 448
AccB1I GGYRCC 1 cut(s) 391
AccI GTMKAC 1 cut(s) 604
AccII CGCG 6 cut(s) 314, 316, 415, 429, 467, 476
AciI CCGC 6 cut(s) 135, 151, 203, 234, 476, 499
AclI AACGTT 1 cut(s) 675
AcoI YGGCCR 1 cut(s) 519
AcsI RAATTY 1 cut(s) 101
AcuI CTGAAG 1 cut(s) 148
AcyI GRCGYC 4 cut(s) 324, 392, 663, 705
AfaI GTAC 2 cut(s) 145, 308
AfiI CCNNNNNNNGG 3 cut(s) 165, 358, 614
AflIII ACRYGT 1 cut(s) 427
AgeI ACCGGT 1 cut(s) 599
AgsI TTSAA 2 cut(s) 434, 592
AjnI CCWGG 6 cut(s) 205, 503, 516, 569, 632, 645
AjuI GAANNNNNNNTTGG 2 cut(s) 251, 283
AluBI AGCT 4 cut(s) 29, 286, 408, 565
AluI AGCT 4 cut(s) 29, 286, 408, 565
Alw26I GTCTC 1 cut(s) 589
AlwNI CAGNNNCTG 1 cut(s) 354
AoxI GGCC 6 cut(s) 168, 199, 208, 224, 501, 519
ApaI GGGCCC 1 cut(s) 172
ApeKI GCWGC 4 cut(s) 5, 26, 408, 650
ApoI RAATTY 1 cut(s) 101
AsiGI ACCGGT 1 cut(s) 599
AspLEI GCGC 4 cut(s) 316, 394, 417, 457
AspS9I GGNCC 7 cut(s) 168, 169, 200, 209, 225, 501, 630
AsuC2I CCSGG 1 cut(s) 47
AsuHPI GGTGA 7 cut(s) 43, 83, 238, 472, 539, 547, 635
AvaII GGWCC 1 cut(s) 630
BaeGI GKGCMC 2 cut(s) 172, 577
BanI GGYRCC 1 cut(s) 391
BanII GRGCYC 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 708
BbvI GCAGC 4 cut(s) 17, 38, 395, 637
BccI CCATC 2 cut(s) 137, 545
BceAI ACGGC 5 cut(s) 214, 379, 405, 506, 676
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BciT130I CCWGG 6 cut(s) 207, 505, 518, 571, 634, 647
BcnI CCSGG 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 589
BfoI RGCGCY 1 cut(s) 395
BfuAI ACCTGC 1 cut(s) 448
BglI GCCNNNNNGGC 2 cut(s) 198, 207
BisI GCNGC 4 cut(s) 6, 27, 409, 651
BlsI GCNGC 4 cut(s) 7, 28, 410, 652
Bme1390I CCNGG 7 cut(s) 47, 207, 505, 518, 571, 634, 647
Bme18I GGWCC 1 cut(s) 630
BmgT120I GGNCC 7 cut(s) 168, 169, 200, 209, 225, 501, 630
BmiI GGNNCC 2 cut(s) 170, 393
BmrFI CCNGG 7 cut(s) 47, 207, 505, 518, 571, 634, 647
BmsI GCATC 1 cut(s) 486
BpiI GAAGAC 1 cut(s) 708
BpmI CTGGAG 1 cut(s) 331
BpuMI CCSGG 1 cut(s) 47
BsaHI GRCGYC 4 cut(s) 324, 392, 663, 705
BsaI GGTCTC 1 cut(s) 589
BsaJI CCNNGG 2 cut(s) 504, 570
BsaWI WCCGGW 1 cut(s) 599
Bsc4I CCNNNNNNNGG 3 cut(s) 165, 358, 614
Bse118I RCCGGY 1 cut(s) 599
Bse3DI GCAATG 1 cut(s) 21
BseBI CCWGG 6 cut(s) 207, 505, 518, 571, 634, 647
BseDI CCNNGG 2 cut(s) 504, 570
BseGI GGATG 2 cut(s) 56, 74
BseLI CCNNNNNNNGG 3 cut(s) 165, 358, 614
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 2 cut(s) 202, 285
BseRI GAGGAG 4 cut(s) 52, 55, 70, 254
BseSI GKGCMC 2 cut(s) 172, 577
BseXI GCAGC 4 cut(s) 17, 38, 395, 637
BsgI GTGCAG 1 cut(s) 394
Bsh1236I CGCG 6 cut(s) 314, 316, 415, 429, 467, 476
Bsh1285I CGRYCG 2 cut(s) 223, 604
BshFI GGCC 6 cut(s) 170, 201, 210, 226, 503, 521
BshNI GGYRCC 1 cut(s) 391
BshTI ACCGGT 1 cut(s) 599
BsiEI CGRYCG 2 cut(s) 223, 604
BsiSI CCGG 2 cut(s) 47, 600
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 3 cut(s) 165, 358, 614
BsmAI GTCTC 1 cut(s) 589
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 6 cut(s) 170, 201, 210, 226, 503, 521
Bso31I GGTCTC 1 cut(s) 589
Bsp120I GGGCCC 1 cut(s) 168
Bsp1286I GDGCHC 2 cut(s) 172, 577
Bsp143I GATC 3 cut(s) 220, 243, 462
BspACI CCGC 6 cut(s) 135, 151, 203, 234, 476, 499
BspANI GGCC 6 cut(s) 170, 201, 210, 226, 503, 521
BspCNI CTCAG 2 cut(s) 201, 284
BspFNI CGCG 6 cut(s) 314, 316, 415, 429, 467, 476
BspLI GGNNCC 2 cut(s) 170, 393
BspMI ACCTGC 1 cut(s) 448
BspT107I GGYRCC 1 cut(s) 391
BspTNI GGTCTC 1 cut(s) 589
BsrDI GCAATG 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 599
BssAI RCCGGY 1 cut(s) 599
BssECI CCNNGG 2 cut(s) 504, 570
BssMI GATC 3 cut(s) 220, 243, 462
BssNI GRCGYC 4 cut(s) 324, 392, 663, 705
Bst2UI CCWGG 6 cut(s) 207, 505, 518, 571, 634, 647
Bst4CI ACNGT 2 cut(s) 43, 630
Bst6I CTCTTC 1 cut(s) 272
BstACI GRCGYC 4 cut(s) 324, 392, 663, 705
BstC8I GCNNGC 4 cut(s) 203, 413, 469, 501
BstDEI CTNAG 2 cut(s) 188, 271
BstEII GGTNACC 1 cut(s) 49
BstENI CCTNNNNNAGG 1 cut(s) 356
BstF5I GGATG 2 cut(s) 56, 74
BstFNI CGCG 6 cut(s) 314, 316, 415, 429, 467, 476
BstH2I RGCGCY 1 cut(s) 395
BstHHI GCGC 4 cut(s) 316, 394, 417, 457
BstKTI GATC 3 cut(s) 223, 246, 465
BstMAI GTCTC 1 cut(s) 589
BstMBI GATC 3 cut(s) 220, 243, 462
BstMCI CGRYCG 2 cut(s) 223, 604
BstMWI GCNNNNNNNGC 6 cut(s) 35, 198, 207, 400, 414, 473
BstNI CCWGG 6 cut(s) 207, 505, 518, 571, 634, 647
BstPI GGTNACC 1 cut(s) 49
BstSCI CCNGG 7 cut(s) 45, 205, 503, 516, 569, 632, 645
BstSLI GKGCMC 2 cut(s) 172, 577
BstUI CGCG 6 cut(s) 314, 316, 415, 429, 467, 476
BstV1I GCAGC 4 cut(s) 17, 38, 395, 637
BstV2I GAAGAC 1 cut(s) 708
BsuRI GGCC 6 cut(s) 170, 201, 210, 226, 503, 521
BtgZI GCGATG 1 cut(s) 498
BtsCI GGATG 2 cut(s) 56, 74
BveI ACCTGC 1 cut(s) 448
Cac8I GCNNGC 4 cut(s) 203, 413, 469, 501
CaiI CAGNNNCTG 1 cut(s) 354
CfoI GCGC 4 cut(s) 316, 394, 417, 457
Cfr10I RCCGGY 1 cut(s) 599
Cfr13I GGNCC 7 cut(s) 168, 169, 200, 209, 225, 501, 630
CseI GACGC 2 cut(s) 652, 713
Csp6I GTAC 2 cut(s) 144, 307
CspAI ACCGGT 1 cut(s) 599
CviQI GTAC 2 cut(s) 144, 307
DdeI CTNAG 2 cut(s) 188, 271
DinI GGCGCC 1 cut(s) 393
DpnI GATC 3 cut(s) 222, 245, 464
DpnII GATC 3 cut(s) 220, 243, 462
EaeI YGGCCR 1 cut(s) 519
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
EciI GGCGGA 2 cut(s) 124, 223
Eco24I GRGCYC 1 cut(s) 172
Eco31I GGTCTC 1 cut(s) 589
Eco47I GGWCC 1 cut(s) 630
Eco57I CTGAAG 1 cut(s) 148
Eco91I GGTNACC 1 cut(s) 49
EcoNI CCTNNNNNAGG 1 cut(s) 356
EcoO109I RGGNCCY 1 cut(s) 168
EcoO65I GGTNACC 1 cut(s) 49
EcoRII CCWGG 6 cut(s) 205, 503, 516, 569, 632, 645
EcoT38I GRGCYC 1 cut(s) 172
EgeI GGCGCC 1 cut(s) 393
EheI GGCGCC 1 cut(s) 393
FaiI YATR 1 cut(s) 684
FaqI GGGAC 1 cut(s) 29
FauI CCCGC 2 cut(s) 210, 492
FblI GTMKAC 1 cut(s) 604
Fnu4HI GCNGC 4 cut(s) 6, 27, 409, 651
FokI GGATG 2 cut(s) 43, 61
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 4 cut(s) 6, 27, 409, 651
FspI TGCGCA 1 cut(s) 456
GlaI GCGC 4 cut(s) 315, 393, 416, 456
GluI GCNGC 4 cut(s) 6, 27, 409, 651
GsuI CTGGAG 1 cut(s) 331
HaeII RGCGCY 1 cut(s) 395
HaeIII GGCC 6 cut(s) 170, 201, 210, 226, 503, 521
HapII CCGG 2 cut(s) 47, 600
HgaI GACGC 2 cut(s) 652, 713
HhaI GCGC 4 cut(s) 316, 394, 417, 457
Hin1I GRCGYC 4 cut(s) 324, 392, 663, 705
Hin6I GCGC 4 cut(s) 314, 392, 415, 455
HinP1I GCGC 4 cut(s) 314, 392, 415, 455
HincII GTYRAC 2 cut(s) 605, 679
HindII GTYRAC 2 cut(s) 605, 679
HinfI GANTC 2 cut(s) 369, 434
HpaII CCGG 2 cut(s) 47, 600
HphI GGTGA 7 cut(s) 43, 83, 238, 472, 539, 547, 635
Hpy166II GTNNAC 3 cut(s) 605, 626, 679
Hpy188III TCNNGA 1 cut(s) 493
Hpy8I GTNNAC 3 cut(s) 605, 626, 679
Hpy99I CGWCG 2 cut(s) 326, 329
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 2 cut(s) 43, 630
HpyCH4IV ACGT 2 cut(s) 324, 675
HpyCH4V TGCA 2 cut(s) 26, 411
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 198, 207, 400, 414, 473
HpyF3I CTNAG 2 cut(s) 188, 271
HpySE526I ACGT 2 cut(s) 324, 675
Hsp92I GRCGYC 4 cut(s) 324, 392, 663, 705
HspAI GCGC 4 cut(s) 314, 392, 415, 455
KasI GGCGCC 1 cut(s) 391
Kzo9I GATC 3 cut(s) 220, 243, 462
LmnI GCTCC 1 cut(s) 291
Lsp1109I GCAGC 4 cut(s) 17, 38, 395, 637
LweI GCATC 1 cut(s) 486
MaeII ACGT 2 cut(s) 324, 675
MaeIII GTNAC 2 cut(s) 49, 385
MalI GATC 3 cut(s) 222, 245, 464
MboI GATC 3 cut(s) 220, 243, 462
MboII GAAGA 5 cut(s) 259, 701, 704, 710, 713
MhlI GDGCHC 2 cut(s) 172, 577
MluCI AATT 1 cut(s) 101
MluI ACGCGT 1 cut(s) 427
Mly113I GGCGCC 1 cut(s) 392
MlyI GAGTC 1 cut(s) 378
MseI TTAA 2 cut(s) 330, 657
MspI CCGG 2 cut(s) 47, 600
MspR9I CCNGG 7 cut(s) 47, 207, 505, 518, 571, 634, 647
MvaI CCWGG 6 cut(s) 207, 505, 518, 571, 634, 647
MvnI CGCG 6 cut(s) 314, 316, 415, 429, 467, 476
MwoI GCNNNNNNNGC 6 cut(s) 35, 198, 207, 400, 414, 473
NarI GGCGCC 1 cut(s) 392
NciI CCSGG 1 cut(s) 47
NdeII GATC 3 cut(s) 220, 243, 462
NlaIV GGNNCC 2 cut(s) 170, 393
NmeAIII GCCGAG 1 cut(s) 429
NmuCI GTSAC 1 cut(s) 49
NsbI TGCGCA 1 cut(s) 456
PaqCI CACCTGC 1 cut(s) 448
PcsI WCGNNNNNNNCGW 3 cut(s) 318, 426, 480
PfeI GAWTC 1 cut(s) 434
PfoI TCCNGGA 1 cut(s) 632
PinAI ACCGGT 1 cut(s) 599
PkrI GCNGC 4 cut(s) 7, 28, 410, 652
Ple19I CGATCG 1 cut(s) 223
PleI GAGTC 1 cut(s) 377
PluTI GGCGCC 1 cut(s) 395
PpsI GAGTC 1 cut(s) 377
Psp1406I AACGTT 1 cut(s) 675
Psp6I CCWGG 6 cut(s) 205, 503, 516, 569, 632, 645
PspEI GGTNACC 1 cut(s) 49
PspGI CCWGG 6 cut(s) 205, 503, 516, 569, 632, 645
PspN4I GGNNCC 2 cut(s) 170, 393
PspOMI GGGCCC 1 cut(s) 168
PspPI GGNCC 7 cut(s) 168, 169, 200, 209, 225, 501, 630
PstNI CAGNNNCTG 1 cut(s) 354
PvuI CGATCG 1 cut(s) 223
RsaI GTAC 2 cut(s) 145, 308
RsaNI GTAC 2 cut(s) 144, 307
SalI GTCGAC 1 cut(s) 603
SaqAI TTAA 2 cut(s) 330, 657
SatI GCNGC 4 cut(s) 6, 27, 409, 651
Sau3AI GATC 3 cut(s) 220, 243, 462
Sau96I GGNCC 7 cut(s) 168, 169, 200, 209, 225, 501, 630
SchI GAGTC 1 cut(s) 378
ScrFI CCNGG 7 cut(s) 47, 207, 505, 518, 571, 634, 647
SduI GDGCHC 2 cut(s) 172, 577
SfaNI GCATC 1 cut(s) 486
SfiI GGCCNNNNNGGCC 1 cut(s) 207
SfoI GGCGCC 1 cut(s) 393
SinI GGWCC 1 cut(s) 630
Sse9I AATT 1 cut(s) 101
SsiI CCGC 6 cut(s) 135, 151, 203, 234, 476, 499
SspDI GGCGCC 1 cut(s) 391
StyD4I CCNGG 7 cut(s) 45, 205, 503, 516, 569, 632, 645
TaaI ACNGT 2 cut(s) 43, 630
TaiI ACGT 2 cut(s) 327, 678
TaqI TCGA 1 cut(s) 604
TasI AATT 1 cut(s) 101
TfiI GAWTC 1 cut(s) 434
Tru1I TTAA 2 cut(s) 330, 657
Tru9I TTAA 2 cut(s) 330, 657
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 4 cut(s) 5, 26, 408, 650
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 711
VpaK11BI GGWCC 1 cut(s) 630
XagI CCTNNNNNAGG 1 cut(s) 356
XapI RAATTY 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 604
ZraI GACGTC 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.