Rh6BG422500

Redoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0017254
Physical Location & Seq
Forward (+)
64541894 .. 64542798
905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG422500.1

Sequence Viewer

Length: 666 bp
ATGGCCGCCTCTGTTAACAACATCGCAGCAACATTTGCCACCGTCCCAGTTACGTCGTCTTCATCTTCCTCAAATCCTCACCAAACAAACTTCTCAATTTCAACGTCTCACAAAACCATCTCCGCCTCTTGTAACCTCCGCAAACCCAATTTCAGGGCCCAATCGTCCCCCCTTCTCAGCCTTTATGGCCCACCCGGCCCACGACCCGATCGGTCCATCTCGACCAGAACGATCAACAAGCCAACCAAACTCCCATTCTCAGCAGGCGATAAGCTCCCGAATGCATCCTTCTCGTACCTCAACCGAAACGACGTCGTTAAATCCGTCACTCTCTCCAGCCTCTGCAAGGGAAAGAGAGTCGTTTTGGTGGGCGTAACGGCGCCGTTCTCGCTGGGTTGCACTCGGTTCGTCAAACGAGTTAAATCGGCGAGGGAGAAAACTGCGGAGGTGATCGCCTGCTTTGCGGTCAGCGACGTTTTCGTGATGCGTGCCTGGGGAGAGATCCTGGCCGTTGGTGAGAGAGTGATGATGTTGTGCGACGGTCTAGGAGAGCTGACCGGGGCACTTGGCGTCTCTCTCAACGGAGCCGTTAAAGCTTGTCTCGGCTTAGGTACGGTCCAGGAGGTTTTGCCTGGCTGCTTTCAACGGCGTGATCACAAACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Redoxin

Protein Analysis

221

Amino Acids

23.53

Weight (kDa)

10.1

Isoelectric Point (pI)

43.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Redoxin PF08534 88 - 194 3.9e-12 Redoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g39680
prunus_persica Prupe.1G378100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0301191
rosa_laevigata RLG00000011269
rosa_multiflora Rmu_sc0002592.1_g000003
rosa_roxburghii Rroxscaffold_171G00441350 Rroxscaffold_7G00167060
rosa_rugosa Rorug06G0302300
rosa_samantha Rh6AG415600 Rh6BG422500 Rh6CG430100 Rh6DG415400 Rh6DG415500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 315
AccB1I GGYRCC 1 cut(s) 379
AciI CCGC 5 cut(s) 6, 123, 139, 443, 464
AclI AACGTT 1 cut(s) 661
AclWI GGATC 1 cut(s) 496
AcoI YGGCCR 2 cut(s) 3, 507
AcyI GRCGYC 3 cut(s) 312, 380, 570
AfaI GTAC 2 cut(s) 296, 613
AfiI CCNNNNNNNGG 2 cut(s) 153, 346
AgsI TTSAA 2 cut(s) 102, 644
AjnI CCWGG 4 cut(s) 491, 504, 618, 631
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AluBI AGCT 3 cut(s) 274, 553, 596
AluI AGCT 3 cut(s) 274, 553, 596
Alw26I GTCTC 3 cut(s) 111, 577, 605
AlwI GGATC 1 cut(s) 496
AlwNI CAGNNNCTG 1 cut(s) 342
AoxI GGCC 5 cut(s) 3, 156, 187, 196, 507
ApaI GGGCCC 1 cut(s) 160
ApeKI GCWGC 2 cut(s) 26, 636
AspLEI GCGC 1 cut(s) 382
AspS9I GGNCC 6 cut(s) 156, 157, 188, 197, 213, 616
AsuC2I CCSGG 2 cut(s) 195, 559
AsuHPI GGTGA 3 cut(s) 71, 460, 527
AvaII GGWCC 2 cut(s) 213, 616
BaeGI GKGCMC 2 cut(s) 160, 565
BanI GGYRCC 1 cut(s) 379
BanII GRGCYC 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 51
BbvI GCAGC 2 cut(s) 38, 623
BccI CCATC 2 cut(s) 125, 224
BceAI ACGGC 5 cut(s) 367, 393, 494, 572, 662
BcgI CGANNNNNNTGC 4 cut(s) 273, 307, 388, 422
BciT130I CCWGG 4 cut(s) 493, 506, 620, 633
BclI TGATCA 1 cut(s) 652
BcnI CCSGG 2 cut(s) 195, 559
BcoDI GTCTC 3 cut(s) 111, 577, 605
BfaI CTAG 1 cut(s) 545
BfoI RGCGCY 1 cut(s) 383
BglI GCCNNNNNGGC 2 cut(s) 186, 195
BisI GCNGC 3 cut(s) 6, 27, 637
BlsI GCNGC 3 cut(s) 7, 28, 638
Bme1390I CCNGG 6 cut(s) 195, 493, 506, 559, 620, 633
Bme18I GGWCC 2 cut(s) 213, 616
BmgT120I GGNCC 6 cut(s) 156, 157, 188, 197, 213, 616
BmiI GGNNCC 3 cut(s) 158, 381, 586
BmrFI CCNGG 6 cut(s) 195, 493, 506, 559, 620, 633
BmrI ACTGGG 1 cut(s) 41
BmsI GCATC 2 cut(s) 293, 474
BmuI ACTGGG 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 319
Bpu10I CCTNAGC 1 cut(s) 607
BpuMI CCSGG 2 cut(s) 195, 559
BsaHI GRCGYC 3 cut(s) 312, 380, 570
BsaJI CCNNGG 2 cut(s) 492, 558
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 346
Bse1I ACTGG 1 cut(s) 47
BseBI CCWGG 4 cut(s) 493, 506, 620, 633
BseDI CCNNGG 2 cut(s) 492, 558
BseGI GGATG 1 cut(s) 284
BseLI CCNNNNNNNGG 2 cut(s) 153, 346
BseMII CTCAG 2 cut(s) 190, 273
BseNI ACTGG 1 cut(s) 47
BseSI GKGCMC 2 cut(s) 160, 565
BseXI GCAGC 2 cut(s) 38, 623
BseYI CCCAGC 1 cut(s) 391
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 5 cut(s) 5, 158, 189, 198, 509
BshNI GGYRCC 1 cut(s) 379
BsiEI CGRYCG 1 cut(s) 211
BsiSI CCGG 2 cut(s) 195, 558
BslFI GGGAC 2 cut(s) 29, 151
BslI CCNNNNNNNGG 2 cut(s) 153, 346
BsmAI GTCTC 3 cut(s) 111, 577, 605
BsmBI CGTCTC 2 cut(s) 111, 577
BsmFI GGGAC 2 cut(s) 29, 151
BsmI GAATGC 1 cut(s) 286
BsnI GGCC 5 cut(s) 5, 158, 189, 198, 509
Bsp120I GGGCCC 1 cut(s) 156
Bsp1286I GDGCHC 2 cut(s) 160, 565
Bsp143I GATC 5 cut(s) 208, 231, 450, 501, 652
BspACI CCGC 5 cut(s) 6, 123, 139, 443, 464
BspANI GGCC 5 cut(s) 5, 158, 189, 198, 509
BspCNI CTCAG 2 cut(s) 189, 272
BspLI GGNNCC 3 cut(s) 158, 381, 586
BspPI GGATC 1 cut(s) 496
BspT107I GGYRCC 1 cut(s) 379
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 492, 558
BssMI GATC 5 cut(s) 208, 231, 450, 501, 652
BssNI GRCGYC 3 cut(s) 312, 380, 570
Bst2UI CCWGG 4 cut(s) 493, 506, 620, 633
Bst4CI ACNGT 3 cut(s) 43, 542, 616
BstACI GRCGYC 3 cut(s) 312, 380, 570
BstAPI GCANNNNNTGC 1 cut(s) 35
BstC8I GCNNGC 3 cut(s) 265, 457, 489
BstDEI CTNAG 3 cut(s) 176, 259, 607
BstENI CCTNNNNNAGG 1 cut(s) 344
BstF5I GGATG 1 cut(s) 284
BstH2I RGCGCY 1 cut(s) 383
BstHHI GCGC 1 cut(s) 382
BstKTI GATC 5 cut(s) 211, 234, 453, 504, 655
BstMAI GTCTC 3 cut(s) 111, 577, 605
BstMBI GATC 5 cut(s) 208, 231, 450, 501, 652
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 6 cut(s) 35, 186, 195, 388, 461, 593
BstNI CCWGG 4 cut(s) 493, 506, 620, 633
BstSCI CCNGG 6 cut(s) 193, 491, 504, 557, 618, 631
BstSLI GKGCMC 2 cut(s) 160, 565
BstV1I GCAGC 2 cut(s) 38, 623
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 501
BstYI RGATCY 1 cut(s) 501
BsuRI GGCC 5 cut(s) 5, 158, 189, 198, 509
BtgZI GCGATG 1 cut(s) 7
BtsCI GGATG 1 cut(s) 284
Cac8I GCNNGC 3 cut(s) 265, 457, 489
CaiI CAGNNNCTG 1 cut(s) 342
CfoI GCGC 1 cut(s) 382
Cfr13I GGNCC 6 cut(s) 156, 157, 188, 197, 213, 616
CseI GACGC 1 cut(s) 559
Csp6I GTAC 2 cut(s) 295, 612
CviQI GTAC 2 cut(s) 295, 612
DdeI CTNAG 3 cut(s) 176, 259, 607
DinI GGCGCC 1 cut(s) 381
DpnI GATC 5 cut(s) 210, 233, 452, 503, 654
DpnII GATC 5 cut(s) 208, 231, 450, 501, 652
EaeI YGGCCR 2 cut(s) 3, 507
EciI GGCGGA 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 160
Eco47I GGWCC 2 cut(s) 213, 616
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 156
EcoRII CCWGG 4 cut(s) 491, 504, 618, 631
EcoT22I ATGCAT 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 160
EgeI GGCGCC 1 cut(s) 381
EheI GGCGCC 1 cut(s) 381
Esp3I CGTCTC 2 cut(s) 111, 577
FaiI YATR 1 cut(s) 186
FaqI GGGAC 2 cut(s) 29, 151
FbaI TGATCA 1 cut(s) 652
Fnu4HI GCNGC 3 cut(s) 6, 27, 637
FokI GGATG 1 cut(s) 271
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 3 cut(s) 6, 27, 637
FspBI CTAG 1 cut(s) 545
GlaI GCGC 1 cut(s) 381
GluI GCNGC 3 cut(s) 6, 27, 637
GsaI CCCAGC 1 cut(s) 395
GsuI CTGGAG 1 cut(s) 319
HaeII RGCGCY 1 cut(s) 383
HaeIII GGCC 5 cut(s) 5, 158, 189, 198, 509
HapII CCGG 2 cut(s) 195, 558
HgaI GACGC 1 cut(s) 559
HhaI GCGC 1 cut(s) 382
Hin1I GRCGYC 3 cut(s) 312, 380, 570
Hin6I GCGC 1 cut(s) 380
HinP1I GCGC 1 cut(s) 380
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 594
HinfI GANTC 1 cut(s) 357
HpaI GTTAAC 1 cut(s) 16
HpaII CCGG 2 cut(s) 195, 558
HphI GGTGA 3 cut(s) 71, 460, 527
Hpy166II GTNNAC 1 cut(s) 16
Hpy188III TCNNGA 3 cut(s) 220, 277, 481
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 5 cut(s) 58, 314, 317, 476, 542
HpyAV CCTTC 2 cut(s) 182, 298
HpyCH4III ACNGT 3 cut(s) 43, 542, 616
HpyCH4IV ACGT 5 cut(s) 53, 104, 312, 474, 661
HpyCH4V TGCA 3 cut(s) 284, 345, 399
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 186, 195, 388, 461, 593
HpyF3I CTNAG 3 cut(s) 176, 259, 607
HpySE526I ACGT 5 cut(s) 53, 104, 312, 474, 661
Hsp92I GRCGYC 3 cut(s) 312, 380, 570
HspAI GCGC 1 cut(s) 380
KasI GGCGCC 1 cut(s) 379
Ksp22I TGATCA 1 cut(s) 652
KspAI GTTAAC 1 cut(s) 16
Kzo9I GATC 5 cut(s) 208, 231, 450, 501, 652
LmnI GCTCC 2 cut(s) 279, 584
Lsp1109I GCAGC 2 cut(s) 38, 623
LweI GCATC 2 cut(s) 293, 474
MaeI CTAG 1 cut(s) 545
MaeII ACGT 5 cut(s) 53, 104, 312, 474, 661
MaeIII GTNAC 4 cut(s) 49, 131, 325, 373
MalI GATC 5 cut(s) 210, 233, 452, 503, 654
MboI GATC 5 cut(s) 208, 231, 450, 501, 652
MboII GAAGA 2 cut(s) 51, 57
MflI RGATCY 1 cut(s) 501
MhlI GDGCHC 2 cut(s) 160, 565
MluCI AATT 2 cut(s) 96, 148
Mly113I GGCGCC 1 cut(s) 380
MlyI GAGTC 1 cut(s) 366
Mph1103I ATGCAT 1 cut(s) 286
MseI TTAA 4 cut(s) 15, 318, 420, 591
MspI CCGG 2 cut(s) 195, 558
MspR9I CCNGG 6 cut(s) 195, 493, 506, 559, 620, 633
Mva1269I GAATGC 1 cut(s) 286
MvaI CCWGG 4 cut(s) 493, 506, 620, 633
MwoI GCNNNNNNNGC 6 cut(s) 35, 186, 195, 388, 461, 593
NarI GGCGCC 1 cut(s) 380
NciI CCSGG 2 cut(s) 195, 559
NdeII GATC 5 cut(s) 208, 231, 450, 501, 652
NlaIV GGNNCC 3 cut(s) 158, 381, 586
NmeAIII GCCGAG 1 cut(s) 582
NmuCI GTSAC 1 cut(s) 325
NsiI ATGCAT 1 cut(s) 286
PcsI WCGNNNNNNNCGW 2 cut(s) 227, 321
PctI GAATGC 1 cut(s) 286
PfoI TCCNGGA 1 cut(s) 618
PkrI GCNGC 3 cut(s) 7, 28, 638
Ple19I CGATCG 1 cut(s) 211
PleI GAGTC 1 cut(s) 365
PluTI GGCGCC 1 cut(s) 383
PpsI GAGTC 1 cut(s) 365
Psp1406I AACGTT 1 cut(s) 661
Psp6I CCWGG 4 cut(s) 491, 504, 618, 631
PspFI CCCAGC 1 cut(s) 391
PspGI CCWGG 4 cut(s) 491, 504, 618, 631
PspN4I GGNNCC 3 cut(s) 158, 381, 586
PspOMI GGGCCC 1 cut(s) 156
PspPI GGNCC 6 cut(s) 156, 157, 188, 197, 213, 616
PstNI CAGNNNCTG 1 cut(s) 342
PsuI RGATCY 1 cut(s) 501
PvuI CGATCG 1 cut(s) 211
RsaI GTAC 2 cut(s) 296, 613
RsaNI GTAC 2 cut(s) 295, 612
SaqAI TTAA 4 cut(s) 15, 318, 420, 591
SatI GCNGC 3 cut(s) 6, 27, 637
Sau3AI GATC 5 cut(s) 208, 231, 450, 501, 652
Sau96I GGNCC 6 cut(s) 156, 157, 188, 197, 213, 616
SchI GAGTC 1 cut(s) 366
ScrFI CCNGG 6 cut(s) 195, 493, 506, 559, 620, 633
SduI GDGCHC 2 cut(s) 160, 565
SfaNI GCATC 2 cut(s) 293, 474
SfiI GGCCNNNNNGGCC 1 cut(s) 195
SfoI GGCGCC 1 cut(s) 381
SinI GGWCC 2 cut(s) 213, 616
Sse9I AATT 2 cut(s) 96, 148
SsiI CCGC 5 cut(s) 6, 123, 139, 443, 464
SspDI GGCGCC 1 cut(s) 379
SspMI CTAG 1 cut(s) 545
StyD4I CCNGG 6 cut(s) 193, 491, 504, 557, 618, 631
TaaI ACNGT 3 cut(s) 43, 542, 616
TaiI ACGT 5 cut(s) 56, 107, 315, 477, 664
TaqI TCGA 1 cut(s) 221
TaqII GACCGA 1 cut(s) 201
TasI AATT 2 cut(s) 96, 148
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 4 cut(s) 15, 318, 420, 591
Tru9I TTAA 4 cut(s) 15, 318, 420, 591
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 2 cut(s) 26, 636
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 1 cut(s) 51
TspGWI ACGGA 2 cut(s) 313, 597
VpaK11BI GGWCC 2 cut(s) 213, 616
XagI CCTNNNNNAGG 1 cut(s) 344
XspI CTAG 1 cut(s) 545
ZraI GACGTC 1 cut(s) 313
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.