Rh6AG415600

Redoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0017254
Physical Location & Seq
Forward (+)
61082175 .. 61083059
885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG415600.1

Sequence Viewer

Length: 771 bp
ATGGCCGCCTCTGTTAACAACATCGCAGCAACATTCGCCACCGTCCCAGTTACGTCGTCTTCATCTTCCTCAAATCCTCACCAAACAAACTTCTCAATTTCAACGTCTCACAAATCCATCTCCGCCTCTTGTAACCTCCGCAAACCCAATTTCGGGGCCCAATCGTCCCCCCTTCTCAGCCTTTATGGCCCACCCGGCCCACGACCCGATCGGTCCATCTCGACCAGAACGATCACCAAGCCAACCAAACTCCCATTCTCAGCAGGCGATAAGCTCCCGAATGCATCCCTCTCGTACCTCAACCGAAACGACGTCGTTAAATCCGTCACTCTCTCCAGCCTTTGCAAGGGAAAGAGAGTCGTTTTGGTGGGCGTAACGGCGCCGTTCTCGCCGGGTTGCACTCGGTTCGTCAAACGAGTTAAATCGGCGAGGGAGAAAACAGCGGAGGTGATCGCCTGCTTCGCGGTCAGCGACGTTTTCGTGATGCGCGCCTGGGGAGAGATCCTGGCCGTTGGTGATAGAGTGATGATGTTGTGCGACGGTCTAGGTGAGTTGACCAGGGCACTTGGCGTCTCACTCAACGGAGCCGTTAAAGCTTGTCTCGGCTTAGGTGTACGGTCCAGGAGGTTTTGCCTGGCTTCTTTCAACGGGGTGATCACAAACGTTGACTTTGACGAAGAAGAAGAAGAAGATTTCTTCATTGAGTCCAGTGGGCCTAAGCCCAAACCACTAAATTGCCATGGAATCGCCCATTCGTTTGCATCACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Redoxin

Protein Analysis

256

Amino Acids

27.2

Weight (kDa)

9.4

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Redoxin PF08534 88 - 228 6.6e-18 Redoxin
AhpC-TSA PF00578 89 - 194 2.8e-07 AhpC/TSA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g39680
prunus_persica Prupe.1G378100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0301191
rosa_laevigata RLG00000011269
rosa_multiflora Rmu_sc0002592.1_g000003
rosa_roxburghii Rroxscaffold_171G00441350 Rroxscaffold_7G00167060
rosa_rugosa Rorug06G0302300
rosa_samantha Rh6AG415600 Rh6BG422500 Rh6CG430100 Rh6DG415400 Rh6DG415500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 315
AccB1I GGYRCC 1 cut(s) 379
AccII CGCG 2 cut(s) 464, 489
AciI CCGC 5 cut(s) 6, 123, 139, 443, 464
AclI AACGTT 1 cut(s) 663
AclWI GGATC 1 cut(s) 496
AcoI YGGCCR 2 cut(s) 3, 507
AcyI GRCGYC 3 cut(s) 312, 380, 570
AfaI GTAC 2 cut(s) 296, 615
AfiI CCNNNNNNNGG 3 cut(s) 152, 153, 346
AgsI TTSAA 2 cut(s) 102, 646
AjnI CCWGG 5 cut(s) 491, 504, 557, 620, 633
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AluBI AGCT 2 cut(s) 274, 596
AluI AGCT 2 cut(s) 274, 596
Alw26I GTCTC 3 cut(s) 111, 577, 605
AlwI GGATC 1 cut(s) 496
AoxI GGCC 6 cut(s) 3, 156, 187, 196, 507, 713
ApaI GGGCCC 1 cut(s) 160
ApeKI GCWGC 1 cut(s) 26
AspLEI GCGC 3 cut(s) 382, 489, 491
AspS9I GGNCC 7 cut(s) 156, 157, 188, 197, 213, 618, 713
AsuC2I CCSGG 2 cut(s) 195, 393
AsuHPI GGTGA 7 cut(s) 71, 226, 460, 527, 560, 664, 756
AvaII GGWCC 2 cut(s) 213, 618
BaeGI GKGCMC 2 cut(s) 160, 565
BanI GGYRCC 1 cut(s) 379
BanII GRGCYC 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 38
BccI CCATC 2 cut(s) 125, 224
BceAI ACGGC 4 cut(s) 367, 393, 494, 572
BcgI CGANNNNNNTGC 4 cut(s) 273, 307, 388, 422
BciT130I CCWGG 5 cut(s) 493, 506, 559, 622, 635
BclI TGATCA 1 cut(s) 654
BcnI CCSGG 2 cut(s) 195, 393
BcoDI GTCTC 3 cut(s) 111, 577, 605
BfaI CTAG 1 cut(s) 545
BfoI RGCGCY 1 cut(s) 383
BglI GCCNNNNNGGC 2 cut(s) 186, 195
BisI GCNGC 2 cut(s) 6, 27
BlsI GCNGC 2 cut(s) 7, 28
Bme1390I CCNGG 7 cut(s) 195, 393, 493, 506, 559, 622, 635
Bme18I GGWCC 2 cut(s) 213, 618
BmgT120I GGNCC 7 cut(s) 156, 157, 188, 197, 213, 618, 713
BmiI GGNNCC 4 cut(s) 157, 158, 381, 586
BmrFI CCNGG 7 cut(s) 195, 393, 493, 506, 559, 622, 635
BmrI ACTGGG 1 cut(s) 41
BmsI GCATC 2 cut(s) 293, 474
BmuI ACTGGG 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 319
Bpu10I CCTNAGC 2 cut(s) 607, 717
BpuMI CCSGG 2 cut(s) 195, 393
BsaHI GRCGYC 3 cut(s) 312, 380, 570
BsaJI CCNNGG 3 cut(s) 492, 558, 739
Bsc4I CCNNNNNNNGG 3 cut(s) 152, 153, 346
Bse1I ACTGG 2 cut(s) 47, 708
BseBI CCWGG 5 cut(s) 493, 506, 559, 622, 635
BseDI CCNNGG 3 cut(s) 492, 558, 739
BseGI GGATG 1 cut(s) 284
BseLI CCNNNNNNNGG 3 cut(s) 152, 153, 346
BseMII CTCAG 2 cut(s) 190, 273
BseNI ACTGG 2 cut(s) 47, 708
BsePI GCGCGC 1 cut(s) 487
BseSI GKGCMC 2 cut(s) 160, 565
BseXI GCAGC 1 cut(s) 38
Bsh1236I CGCG 2 cut(s) 464, 489
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 6 cut(s) 5, 158, 189, 198, 509, 715
BshNI GGYRCC 1 cut(s) 379
BsiEI CGRYCG 1 cut(s) 211
BsiSI CCGG 2 cut(s) 195, 392
BslFI GGGAC 2 cut(s) 29, 151
BslI CCNNNNNNNGG 3 cut(s) 152, 153, 346
BsmAI GTCTC 3 cut(s) 111, 577, 605
BsmBI CGTCTC 2 cut(s) 111, 577
BsmFI GGGAC 2 cut(s) 29, 151
BsmI GAATGC 1 cut(s) 286
BsnI GGCC 6 cut(s) 5, 158, 189, 198, 509, 715
Bsp120I GGGCCC 1 cut(s) 156
Bsp1286I GDGCHC 2 cut(s) 160, 565
Bsp143I GATC 5 cut(s) 208, 231, 450, 501, 654
Bsp19I CCATGG 1 cut(s) 739
BspACI CCGC 5 cut(s) 6, 123, 139, 443, 464
BspANI GGCC 6 cut(s) 5, 158, 189, 198, 509, 715
BspCNI CTCAG 2 cut(s) 189, 272
BspFNI CGCG 2 cut(s) 464, 489
BspLI GGNNCC 4 cut(s) 157, 158, 381, 586
BspPI GGATC 1 cut(s) 496
BspT107I GGYRCC 1 cut(s) 379
BsrI ACTGG 2 cut(s) 47, 708
BssECI CCNNGG 3 cut(s) 492, 558, 739
BssHII GCGCGC 1 cut(s) 487
BssMI GATC 5 cut(s) 208, 231, 450, 501, 654
BssNI GRCGYC 3 cut(s) 312, 380, 570
BssT1I CCWWGG 1 cut(s) 739
Bst2UI CCWGG 5 cut(s) 493, 506, 559, 622, 635
Bst4CI ACNGT 3 cut(s) 43, 542, 618
BstACI GRCGYC 3 cut(s) 312, 380, 570
BstC8I GCNNGC 3 cut(s) 265, 457, 489
BstDEI CTNAG 4 cut(s) 176, 259, 607, 717
BstDSI CCRYGG 1 cut(s) 739
BstENI CCTNNNNNAGG 1 cut(s) 344
BstF5I GGATG 1 cut(s) 284
BstFNI CGCG 2 cut(s) 464, 489
BstH2I RGCGCY 1 cut(s) 383
BstHHI GCGC 3 cut(s) 382, 489, 491
BstKTI GATC 5 cut(s) 211, 234, 453, 504, 657
BstMAI GTCTC 3 cut(s) 111, 577, 605
BstMBI GATC 5 cut(s) 208, 231, 450, 501, 654
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 6 cut(s) 35, 186, 195, 388, 461, 593
BstNI CCWGG 5 cut(s) 493, 506, 559, 622, 635
BstSCI CCNGG 7 cut(s) 193, 391, 491, 504, 557, 620, 633
BstSLI GKGCMC 2 cut(s) 160, 565
BstUI CGCG 2 cut(s) 464, 489
BstV1I GCAGC 1 cut(s) 38
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 501
BstYI RGATCY 1 cut(s) 501
BsuRI GGCC 6 cut(s) 5, 158, 189, 198, 509, 715
BtgI CCRYGG 1 cut(s) 739
BtgZI GCGATG 1 cut(s) 7
BtsCI GGATG 1 cut(s) 284
BtsIMutI CAGTG 1 cut(s) 715
Cac8I GCNNGC 3 cut(s) 265, 457, 489
CfoI GCGC 3 cut(s) 382, 489, 491
Cfr13I GGNCC 7 cut(s) 156, 157, 188, 197, 213, 618, 713
CseI GACGC 1 cut(s) 559
Csp6I GTAC 2 cut(s) 295, 614
CviAII CATG 1 cut(s) 740
CviQI GTAC 2 cut(s) 295, 614
DdeI CTNAG 4 cut(s) 176, 259, 607, 717
DinI GGCGCC 1 cut(s) 381
DpnI GATC 5 cut(s) 210, 233, 452, 503, 656
DpnII GATC 5 cut(s) 208, 231, 450, 501, 654
EaeI YGGCCR 2 cut(s) 3, 507
EciI GGCGGA 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 739
Eco24I GRGCYC 1 cut(s) 160
Eco47I GGWCC 2 cut(s) 213, 618
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 156
EcoRII CCWGG 5 cut(s) 491, 504, 557, 620, 633
EcoT14I CCWWGG 1 cut(s) 739
EcoT22I ATGCAT 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 160
EgeI GGCGCC 1 cut(s) 381
EheI GGCGCC 1 cut(s) 381
ErhI CCWWGG 1 cut(s) 739
Esp3I CGTCTC 2 cut(s) 111, 577
FaeI CATG 1 cut(s) 743
FaiI YATR 2 cut(s) 186, 741
FaqI GGGAC 2 cut(s) 29, 151
FatI CATG 1 cut(s) 739
FbaI TGATCA 1 cut(s) 654
Fnu4HI GCNGC 2 cut(s) 6, 27
FokI GGATG 1 cut(s) 271
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 2 cut(s) 6, 27
FspBI CTAG 1 cut(s) 545
GlaI GCGC 3 cut(s) 381, 488, 490
GluI GCNGC 2 cut(s) 6, 27
GsuI CTGGAG 1 cut(s) 319
HaeII RGCGCY 1 cut(s) 383
HaeIII GGCC 6 cut(s) 5, 158, 189, 198, 509, 715
HapII CCGG 2 cut(s) 195, 392
HgaI GACGC 1 cut(s) 559
HhaI GCGC 3 cut(s) 382, 489, 491
Hin1I GRCGYC 3 cut(s) 312, 380, 570
Hin1II CATG 1 cut(s) 743
Hin6I GCGC 3 cut(s) 380, 487, 489
HinP1I GCGC 3 cut(s) 380, 487, 489
HincII GTYRAC 3 cut(s) 16, 555, 667
HindII GTYRAC 3 cut(s) 16, 555, 667
HindIII AAGCTT 1 cut(s) 594
HinfI GANTC 3 cut(s) 357, 704, 744
HpaI GTTAAC 1 cut(s) 16
HpaII CCGG 2 cut(s) 195, 392
HphI GGTGA 7 cut(s) 71, 226, 460, 527, 560, 664, 756
Hpy166II GTNNAC 4 cut(s) 16, 555, 614, 667
Hpy188III TCNNGA 3 cut(s) 220, 277, 481
Hpy8I GTNNAC 4 cut(s) 16, 555, 614, 667
Hpy99I CGWCG 5 cut(s) 58, 314, 317, 476, 542
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 3 cut(s) 43, 542, 618
HpyCH4IV ACGT 5 cut(s) 53, 104, 312, 474, 663
HpyCH4V TGCA 4 cut(s) 284, 345, 399, 761
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 186, 195, 388, 461, 593
HpyF3I CTNAG 4 cut(s) 176, 259, 607, 717
HpySE526I ACGT 5 cut(s) 53, 104, 312, 474, 663
Hsp92I GRCGYC 3 cut(s) 312, 380, 570
Hsp92II CATG 1 cut(s) 743
HspAI GCGC 3 cut(s) 380, 487, 489
KasI GGCGCC 1 cut(s) 379
Ksp22I TGATCA 1 cut(s) 654
KspAI GTTAAC 1 cut(s) 16
Kzo9I GATC 5 cut(s) 208, 231, 450, 501, 654
LmnI GCTCC 2 cut(s) 279, 584
Lsp1109I GCAGC 1 cut(s) 38
LweI GCATC 2 cut(s) 293, 474
MaeI CTAG 1 cut(s) 545
MaeII ACGT 5 cut(s) 53, 104, 312, 474, 663
MaeIII GTNAC 4 cut(s) 49, 131, 325, 373
MalI GATC 5 cut(s) 210, 233, 452, 503, 656
MboI GATC 5 cut(s) 208, 231, 450, 501, 654
MboII GAAGA 8 cut(s) 51, 57, 688, 689, 692, 695, 698, 701
MflI RGATCY 1 cut(s) 501
MhlI GDGCHC 2 cut(s) 160, 565
MluCI AATT 3 cut(s) 96, 148, 733
Mly113I GGCGCC 1 cut(s) 380
MlyI GAGTC 2 cut(s) 366, 713
Mph1103I ATGCAT 1 cut(s) 286
MseI TTAA 4 cut(s) 15, 318, 420, 591
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 2 cut(s) 195, 392
MspR9I CCNGG 7 cut(s) 195, 393, 493, 506, 559, 622, 635
Mva1269I GAATGC 1 cut(s) 286
MvaI CCWGG 5 cut(s) 493, 506, 559, 622, 635
MvnI CGCG 2 cut(s) 464, 489
MwoI GCNNNNNNNGC 6 cut(s) 35, 186, 195, 388, 461, 593
NarI GGCGCC 1 cut(s) 380
NciI CCSGG 2 cut(s) 195, 393
NcoI CCATGG 1 cut(s) 739
NdeII GATC 5 cut(s) 208, 231, 450, 501, 654
NlaIII CATG 1 cut(s) 743
NlaIV GGNNCC 4 cut(s) 157, 158, 381, 586
NmeAIII GCCGAG 1 cut(s) 582
NmuCI GTSAC 1 cut(s) 325
NsiI ATGCAT 1 cut(s) 286
PauI GCGCGC 1 cut(s) 487
PcsI WCGNNNNNNNCGW 3 cut(s) 227, 321, 468
PctI GAATGC 1 cut(s) 286
PfeI GAWTC 1 cut(s) 744
PfoI TCCNGGA 1 cut(s) 620
PkrI GCNGC 2 cut(s) 7, 28
Ple19I CGATCG 1 cut(s) 211
PleI GAGTC 2 cut(s) 365, 712
PluTI GGCGCC 1 cut(s) 383
PpsI GAGTC 2 cut(s) 365, 712
Psp1406I AACGTT 1 cut(s) 663
Psp6I CCWGG 5 cut(s) 491, 504, 557, 620, 633
PspGI CCWGG 5 cut(s) 491, 504, 557, 620, 633
PspN4I GGNNCC 4 cut(s) 157, 158, 381, 586
PspOMI GGGCCC 1 cut(s) 156
PspPI GGNCC 7 cut(s) 156, 157, 188, 197, 213, 618, 713
PsuI RGATCY 1 cut(s) 501
PteI GCGCGC 1 cut(s) 487
PvuI CGATCG 1 cut(s) 211
RsaI GTAC 2 cut(s) 296, 615
RsaNI GTAC 2 cut(s) 295, 614
SaqAI TTAA 4 cut(s) 15, 318, 420, 591
SatI GCNGC 2 cut(s) 6, 27
Sau3AI GATC 5 cut(s) 208, 231, 450, 501, 654
Sau96I GGNCC 7 cut(s) 156, 157, 188, 197, 213, 618, 713
SchI GAGTC 2 cut(s) 366, 713
ScrFI CCNGG 7 cut(s) 195, 393, 493, 506, 559, 622, 635
SduI GDGCHC 2 cut(s) 160, 565
SfaNI GCATC 2 cut(s) 293, 474
SfiI GGCCNNNNNGGCC 1 cut(s) 195
SfoI GGCGCC 1 cut(s) 381
SinI GGWCC 2 cut(s) 213, 618
Sse9I AATT 3 cut(s) 96, 148, 733
SsiI CCGC 5 cut(s) 6, 123, 139, 443, 464
SspDI GGCGCC 1 cut(s) 379
SspMI CTAG 1 cut(s) 545
StyD4I CCNGG 7 cut(s) 193, 391, 491, 504, 557, 620, 633
StyI CCWWGG 1 cut(s) 739
TaaI ACNGT 3 cut(s) 43, 542, 618
TaiI ACGT 5 cut(s) 56, 107, 315, 477, 666
TaqI TCGA 1 cut(s) 221
TaqII GACCGA 1 cut(s) 201
TasI AATT 3 cut(s) 96, 148, 733
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 744
Tru1I TTAA 4 cut(s) 15, 318, 420, 591
Tru9I TTAA 4 cut(s) 15, 318, 420, 591
TscAI CASTG 1 cut(s) 715
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 2 cut(s) 51, 688
TspGWI ACGGA 2 cut(s) 313, 597
TspRI CASTG 1 cut(s) 715
VpaK11BI GGWCC 2 cut(s) 213, 618
XagI CCTNNNNNAGG 1 cut(s) 344
XspI CTAG 1 cut(s) 545
ZraI GACGTC 1 cut(s) 313
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.