Rorug06G0302300

Redoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0017254
Physical Location & Seq
Reverse (-)
45364114 .. 45366696
2583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0302300.1

Sequence Viewer

Length: 1137 bp
ATGGCTAATTGTTTCGATTTCGGTTGGTGCTACTGTCCTACTGATGTTGATGGTATAATTGCTAAATTGCAGATTTGCAGAAATGATATAATTGCTTGGCCTATGGAGTATGGAAAGCAGGTCATCTCGGGTCATCTTTTTGAGATTTTGGGTTCTTGCATTGCTGAAAGTCAAGACACTGGGTCTTCGGCAACCTCATCAAGATTTGCAGTTGGCCAGTTGTCTACTTATCTGGCCTCAGGCCTGCAATTTCAATATCATCAACAGGTGGACTGCATTGTGTTCGACAAGACAGGGACTCTTACAATTGGGAAGCCACTGGTTGTTAACACACGACTCATGAAAAATATAGTGCTTCGAGAATTCTATGAACTTGTTGCTGCAGCTGAGGTTAACAGTGAACACCCCTTGGCCAAGGCCATTGTTGAGTATGCCAAAAAATTCAGAGAAGATGAAGAGAATCCAGCCGGGCCAGAAGCGCATGACTTTGCCTCCATTACTGGTCACGGGGTGAAGGCTATTGTTCAGGGCAGGGAAATAATTGTGGGGAACAAGAGCTTGATGGTGGACCAGAACATTGCAGTTCCACTCGATGCAGAAGACTACCTAGCAGAAGCTGAAGGGCTGGCTCAAACTGGGATTCTAGTAGCCATAGATGGAGAAGTGGCTGGAGTTCTAGCAATATCTGATCCACTGAAACCAGGTGCTCAAGAAGTAATTACCATACTCAAGTCAATGAATGTTAGAAGCATAATGGTGACAGGTGACAATTGGGGAATTGCAAATTCTATTGCCAATGAAGTTGGTATTGATACTGTTATAGCCGAAGCGAAACCTGATCACCAGAAAGCAGAGAAAGTGAAGGAATTGCAGGCCTCAGGCTACACTGTGGCGATGGTGGGAGATGGCATCAATGACTCACCAGCACTTGTGGCGGCAGATGTAGGAATGGCAATTGGTGCTGGCACTAACATTGCAATTGAGGCAGCAGACATTGTGCTAATGAAGAGATATCAAAATATCAGGAAAACAAGTGGGACCCACAAAAAATTTCACACGGACTCCCAAAACCGTGTGAGTAGAGCATTAGCGCCCCCTCCGAAGGCAACCGAAAAACAATCCGTAGCTGCACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Redoxin

Protein Analysis

378

Amino Acids

40.5

Weight (kDa)

5.12

Isoelectric Point (pI)

29.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase PF00702 90 - 314 1.4e-32 haloacid dehalogenase-like hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g39680
prunus_persica Prupe.1G378100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0301191
rosa_laevigata RLG00000011269
rosa_multiflora Rmu_sc0002592.1_g000003
rosa_roxburghii Rroxscaffold_171G00441350 Rroxscaffold_7G00167060
rosa_rugosa Rorug06G0302300
rosa_samantha Rh6AG415600 Rh6BG422500 Rh6CG430100 Rh6DG415400 Rh6DG415500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 109
AccI GTMKAC 1 cut(s) 224
AciI CCGC 1 cut(s) 935
AclWI GGATC 1 cut(s) 683
AcoI YGGCCR 2 cut(s) 214, 411
AcsI RAATTY 4 cut(s) 362, 440, 784, 1049
AcuI CTGAAG 1 cut(s) 639
AdeI CACNNNGTG 1 cut(s) 511
AfiI CCNNNNNNNGG 1 cut(s) 1102
AgsI TTSAA 1 cut(s) 254
AhdI GACNNNNNGTC 1 cut(s) 181
AjnI CCWGG 1 cut(s) 700
AluBI AGCT 4 cut(s) 386, 558, 617, 1127
AluI AGCT 4 cut(s) 386, 558, 617, 1127
Alw21I GWGCWC 1 cut(s) 709
AlwI GGATC 1 cut(s) 683
AlwNI CAGNNNCTG 1 cut(s) 617
Ama87I CYCGRG 1 cut(s) 127
AoxI GGCC 8 cut(s) 98, 214, 234, 241, 411, 417, 470, 873
ApeKI GCWGC 4 cut(s) 380, 383, 986, 1127
ApoI RAATTY 4 cut(s) 362, 440, 784, 1049
AspLEI GCGC 2 cut(s) 481, 1093
AspS9I GGNCC 3 cut(s) 470, 568, 1038
AsuC2I CCSGG 1 cut(s) 469
AsuHPI GGTGA 5 cut(s) 523, 769, 776, 833, 912
AvaI CYCGRG 1 cut(s) 127
AvaII GGWCC 2 cut(s) 568, 1038
AxyI CCTNAGG 2 cut(s) 238, 877
BalI TGGCCA 2 cut(s) 216, 413
BbsI GAAGAC 2 cut(s) 177, 606
Bbv12I GWGCWC 1 cut(s) 709
BbvCI CCTCAGC 1 cut(s) 387
BbvI GCAGC 4 cut(s) 367, 395, 998, 1114
BccI CCATC 5 cut(s) 44, 556, 650, 889, 899
BcgI CGANNNNNNTGC 2 cut(s) 265, 299
BciT130I CCWGG 1 cut(s) 702
BclI TGATCA 1 cut(s) 838
BcnI CCSGG 1 cut(s) 469
BfaI CTAG 3 cut(s) 608, 644, 677
BfmI CTRYAG 2 cut(s) 381, 1133
BfoI RGCGCY 1 cut(s) 1094
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 5 cut(s) 381, 384, 936, 987, 1128
BlsI GCNGC 5 cut(s) 382, 385, 937, 988, 1129
Bme1390I CCNGG 2 cut(s) 469, 702
Bme18I GGWCC 2 cut(s) 568, 1038
BmeRI GACNNNNNGTC 1 cut(s) 181
BmeT110I CYCGRG 1 cut(s) 127
BmgT120I GGNCC 3 cut(s) 470, 568, 1038
BmiI GGNNCC 2 cut(s) 1039, 1040
BmrFI CCNGG 2 cut(s) 469, 702
BmrI ACTGGG 2 cut(s) 189, 645
BmsI GCATC 2 cut(s) 583, 918
BmuI ACTGGG 2 cut(s) 189, 645
BpiI GAAGAC 2 cut(s) 177, 606
BpmI CTGGAG 1 cut(s) 690
Bpu10I CCTNAGC 1 cut(s) 387
BpuEI CTTGAG 2 cut(s) 693, 713
BpuMI CCSGG 1 cut(s) 469
BsaJI CCNNGG 2 cut(s) 408, 414
BsaXI ACNNNNNCTCC 4 cut(s) 476, 506, 1046, 1076
Bsc4I CCNNNNNNNGG 1 cut(s) 1102
Bse1I ACTGG 5 cut(s) 184, 217, 324, 505, 640
Bse21I CCTNAGG 2 cut(s) 238, 877
Bse3DI GCAATG 3 cut(s) 159, 576, 972
BseBI CCWGG 1 cut(s) 702
BseDI CCNNGG 2 cut(s) 408, 414
BseLI CCNNNNNNNGG 1 cut(s) 1102
BseMI GCAATG 3 cut(s) 159, 576, 972
BseMII CTCAG 3 cut(s) 252, 378, 891
BseNI ACTGG 5 cut(s) 184, 217, 324, 505, 640
BseXI GCAGC 4 cut(s) 367, 395, 998, 1114
BsgI GTGCAG 1 cut(s) 1113
BshFI GGCC 8 cut(s) 100, 216, 236, 243, 413, 419, 472, 875
BsiHKAI GWGCWC 1 cut(s) 709
BsiHKCI CYCGRG 1 cut(s) 127
BsiSI CCGG 1 cut(s) 468
BslFI GGGAC 2 cut(s) 310, 1051
BslI CCNNNNNNNGG 1 cut(s) 1102
BsmFI GGGAC 2 cut(s) 310, 1051
BsnI GGCC 8 cut(s) 100, 216, 236, 243, 413, 419, 472, 875
BsoBI CYCGRG 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 709
Bsp143I GATC 2 cut(s) 688, 838
BspACI CCGC 1 cut(s) 935
BspANI GGCC 8 cut(s) 100, 216, 236, 243, 413, 419, 472, 875
BspCNI CTCAG 3 cut(s) 251, 379, 890
BspHI TCATGA 1 cut(s) 339
BspLI GGNNCC 2 cut(s) 1039, 1040
BspMAI CTGCAG 1 cut(s) 385
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 1 cut(s) 683
BsrDI GCAATG 3 cut(s) 159, 576, 972
BsrI ACTGG 5 cut(s) 184, 217, 324, 505, 640
BssECI CCNNGG 2 cut(s) 408, 414
BssMI GATC 2 cut(s) 688, 838
BssT1I CCWWGG 2 cut(s) 408, 414
Bst2UI CCWGG 1 cut(s) 702
Bst4CI ACNGT 6 cut(s) 35, 398, 817, 889, 1073, 1134
Bst6I CTCTTC 2 cut(s) 450, 1001
BstAPI GCANNNNNTGC 1 cut(s) 959
BstC8I GCNNGC 4 cut(s) 245, 627, 873, 964
BstDEI CTNAG 3 cut(s) 238, 387, 877
BstH2I RGCGCY 1 cut(s) 1094
BstHHI GCGC 2 cut(s) 481, 1093
BstKTI GATC 2 cut(s) 691, 841
BstMBI GATC 2 cut(s) 688, 838
BstMWI GCNNNNNNNGC 4 cut(s) 478, 932, 959, 983
BstNI CCWGG 1 cut(s) 702
BstSCI CCNGG 2 cut(s) 467, 700
BstSFI CTRYAG 2 cut(s) 381, 1133
BstV1I GCAGC 4 cut(s) 367, 395, 998, 1114
BstV2I GAAGAC 2 cut(s) 177, 606
Bsu36I CCTNAGG 2 cut(s) 238, 877
BsuRI GGCC 8 cut(s) 100, 216, 236, 243, 413, 419, 472, 875
BtgZI GCGATG 1 cut(s) 908
BtsIMutI CAGTG 6 cut(s) 177, 317, 403, 692, 885, 1130
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 4 cut(s) 245, 627, 873, 964
CaiI CAGNNNCTG 1 cut(s) 617
CciI TCATGA 1 cut(s) 339
CfoI GCGC 2 cut(s) 481, 1093
Cfr13I GGNCC 3 cut(s) 470, 568, 1038
CsiI ACCWGGT 1 cut(s) 700
CviAII CATG 2 cut(s) 340, 482
DdeI CTNAG 3 cut(s) 238, 387, 877
DpnI GATC 2 cut(s) 690, 840
DpnII GATC 2 cut(s) 688, 838
DraIII CACNNNGTG 1 cut(s) 511
DriI GACNNNNNGTC 1 cut(s) 181
EaeI YGGCCR 2 cut(s) 214, 411
Eam1104I CTCTTC 2 cut(s) 450, 1001
Eam1105I GACNNNNNGTC 1 cut(s) 181
EarI CTCTTC 2 cut(s) 450, 1001
Eco130I CCWWGG 2 cut(s) 408, 414
Eco147I AGGCCT 2 cut(s) 243, 875
Eco32I GATATC 1 cut(s) 1013
Eco47I GGWCC 2 cut(s) 568, 1038
Eco57I CTGAAG 1 cut(s) 639
Eco81I CCTNAGG 2 cut(s) 238, 877
Eco88I CYCGRG 1 cut(s) 127
EcoO109I RGGNCCY 1 cut(s) 1038
EcoRI GAATTC 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 700
EcoRV GATATC 1 cut(s) 1013
EcoT14I CCWWGG 2 cut(s) 408, 414
ErhI CCWWGG 2 cut(s) 408, 414
FaeI CATG 2 cut(s) 343, 485
FaqI GGGAC 2 cut(s) 310, 1051
FatI CATG 2 cut(s) 339, 481
FbaI TGATCA 1 cut(s) 838
FblI GTMKAC 1 cut(s) 224
Fnu4HI GCNGC 5 cut(s) 381, 384, 936, 987, 1128
Fsp4HI GCNGC 5 cut(s) 381, 384, 936, 987, 1128
FspBI CTAG 3 cut(s) 608, 644, 677
GlaI GCGC 2 cut(s) 480, 1092
GluI GCNGC 5 cut(s) 381, 384, 936, 987, 1128
GsuI CTGGAG 1 cut(s) 690
HaeII RGCGCY 1 cut(s) 1094
HaeIII GGCC 8 cut(s) 100, 216, 236, 243, 413, 419, 472, 875
HapII CCGG 1 cut(s) 468
HhaI GCGC 2 cut(s) 481, 1093
Hin1II CATG 2 cut(s) 343, 485
Hin6I GCGC 2 cut(s) 479, 1091
HinP1I GCGC 2 cut(s) 479, 1091
HincII GTYRAC 2 cut(s) 328, 394
HindII GTYRAC 2 cut(s) 328, 394
HinfI GANTC 6 cut(s) 298, 336, 460, 640, 917, 1061
HpaI GTTAAC 2 cut(s) 328, 394
HpaII CCGG 1 cut(s) 468
HphI GGTGA 5 cut(s) 523, 769, 776, 833, 912
Hpy166II GTNNAC 6 cut(s) 225, 271, 328, 394, 401, 568
Hpy188I TCNGA 3 cut(s) 446, 688, 1101
Hpy188III TCNNGA 6 cut(s) 173, 201, 340, 359, 710, 1024
Hpy8I GTNNAC 6 cut(s) 225, 271, 328, 394, 401, 568
HpyAV CCTTC 4 cut(s) 508, 614, 856, 1096
HpyCH4III ACNGT 6 cut(s) 35, 398, 817, 889, 1073, 1134
HpyF10VI GCNNNNNNNGC 4 cut(s) 478, 932, 959, 983
HpyF3I CTNAG 3 cut(s) 238, 387, 877
Hsp92II CATG 2 cut(s) 343, 485
HspAI GCGC 2 cut(s) 479, 1091
KflI GGGWCCC 1 cut(s) 1038
Ksp22I TGATCA 1 cut(s) 838
KspAI GTTAAC 2 cut(s) 328, 394
Kzo9I GATC 2 cut(s) 688, 838
Lsp1109I GCAGC 4 cut(s) 367, 395, 998, 1114
LweI GCATC 2 cut(s) 583, 918
MabI ACCWGGT 1 cut(s) 700
MaeI CTAG 3 cut(s) 608, 644, 677
MaeIII GTNAC 3 cut(s) 503, 757, 764
MalI GATC 2 cut(s) 690, 840
MboI GATC 2 cut(s) 688, 838
MboII GAAGA 5 cut(s) 177, 461, 467, 611, 1018
MfeI CAATTG 4 cut(s) 306, 769, 954, 978
MhlI GDGCHC 1 cut(s) 709
MlsI TGGCCA 2 cut(s) 216, 413
MluNI TGGCCA 2 cut(s) 216, 413
MlyI GAGTC 4 cut(s) 292, 330, 911, 1055
MnlI CCTC 7 cut(s) 205, 247, 382, 502, 886, 976, 1107
Mox20I TGGCCA 2 cut(s) 216, 413
MscI TGGCCA 2 cut(s) 216, 413
MseI TTAA 2 cut(s) 327, 393
MslI CAYNNNNRTG 1 cut(s) 755
Msp20I TGGCCA 2 cut(s) 216, 413
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 1 cut(s) 468
MspR9I CCNGG 2 cut(s) 469, 702
MunI CAATTG 4 cut(s) 306, 769, 954, 978
MvaI CCWGG 1 cut(s) 702
MwoI GCNNNNNNNGC 4 cut(s) 478, 932, 959, 983
NciI CCSGG 1 cut(s) 469
NdeII GATC 2 cut(s) 688, 838
NlaIII CATG 2 cut(s) 343, 485
NlaIV GGNNCC 2 cut(s) 1039, 1040
NmuCI GTSAC 3 cut(s) 503, 757, 764
PagI TCATGA 1 cut(s) 339
PceI AGGCCT 2 cut(s) 243, 875
PfeI GAWTC 2 cut(s) 460, 640
PkrI GCNGC 5 cut(s) 382, 385, 937, 988, 1129
PleI GAGTC 4 cut(s) 292, 330, 911, 1055
PpsI GAGTC 4 cut(s) 292, 330, 911, 1055
PpuMI RGGWCCY 1 cut(s) 1038
Psp5II RGGWCCY 1 cut(s) 1038
Psp6I CCWGG 1 cut(s) 700
PspGI CCWGG 1 cut(s) 700
PspN4I GGNNCC 2 cut(s) 1039, 1040
PspPI GGNCC 3 cut(s) 470, 568, 1038
PspPPI RGGWCCY 1 cut(s) 1038
PstI CTGCAG 1 cut(s) 385
PstNI CAGNNNCTG 1 cut(s) 617
PvuII CAGCTG 1 cut(s) 386
RseI CAYNNNNRTG 1 cut(s) 755
SaqAI TTAA 2 cut(s) 327, 393
SatI GCNGC 5 cut(s) 381, 384, 936, 987, 1128
Sau3AI GATC 2 cut(s) 688, 838
Sau96I GGNCC 3 cut(s) 470, 568, 1038
SchI GAGTC 4 cut(s) 292, 330, 911, 1055
ScrFI CCNGG 2 cut(s) 469, 702
SduI GDGCHC 1 cut(s) 709
SexAI ACCWGGT 1 cut(s) 700
SfaNI GCATC 2 cut(s) 583, 918
SfcI CTRYAG 2 cut(s) 381, 1133
SinI GGWCC 2 cut(s) 568, 1038
SmiMI CAYNNNNRTG 1 cut(s) 755
SmlI CTYRAG 2 cut(s) 708, 728
SmoI CTYRAG 2 cut(s) 708, 728
SseBI AGGCCT 2 cut(s) 243, 875
SsiI CCGC 1 cut(s) 935
SspMI CTAG 3 cut(s) 608, 644, 677
StuI AGGCCT 2 cut(s) 243, 875
StyD4I CCNGG 2 cut(s) 467, 700
StyI CCWWGG 2 cut(s) 408, 414
TaaI ACNGT 6 cut(s) 35, 398, 817, 889, 1073, 1134
TaqI TCGA 4 cut(s) 15, 285, 358, 591
TauI GCSGC 1 cut(s) 938
TfiI GAWTC 2 cut(s) 460, 640
Tru1I TTAA 2 cut(s) 327, 393
Tru9I TTAA 2 cut(s) 327, 393
TscAI CASTG 6 cut(s) 184, 324, 403, 699, 892, 1137
TseFI GTSAC 3 cut(s) 503, 757, 764
TseI GCWGC 4 cut(s) 380, 383, 986, 1127
Tsp45I GTSAC 3 cut(s) 503, 757, 764
TspDTI ATGAA 6 cut(s) 356, 384, 468, 752, 813, 1019
TspGWI ACGGA 2 cut(s) 1073, 1111
TspRI CASTG 6 cut(s) 184, 324, 403, 699, 892, 1137
VpaK11BI GGWCC 2 cut(s) 568, 1038
XapI RAATTY 4 cut(s) 362, 440, 784, 1049
XmiI GTMKAC 1 cut(s) 224
XspI CTAG 3 cut(s) 608, 644, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.