Prupe.1G378100_v2.0.a1

Redoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017254
Physical Location & Seq
Reverse (-)
34183199 .. 34183924
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G378100.1

Sequence Viewer

Length: 726 bp
ATGGCTGCCTCTGTTAACAACATTGCAGCTACATTTGCAACAGTACCAAAAACATCCTCTCCAAGTTCATCGTCTTCTTCTTCAAATCCTCACCAAACAAAGCTCTCTCTTTCACTATCCCACAAATCCATCTCAACCCCTTGGAACCTACACAAAACCCTCCCTAGGTCCCAAAGATCCTCCCTTCTCAACCTCTATGGCCCACCGGGCCCACCCCCGAATGGCTCCATCTCCACCGTCCATCCCCGCCCCCTGATGATCACCCCAAAACCAAGCAGACCCTTCTCAGTTTGCATAGGCGATAAGCTCCCAAACATAACCCTCTCTTACCTCGACCCAAACGACGGGGCCAAGCTCATCTCTCTCTCAACCCTCTGCAAAGGCAAGAGAGTCGTTTTGGTGGGTGTTTCGGCGCCGTTCTCTCCGCATTGCACTCGGTTCATGAAACGGGTTGAATCGGCGAGAGGTAAGAGCTCGGACTTGATCGCCTGCGTCGCGGCCAGCGACGTGTTTGTGATGAGGGCGTGGGGTGAGAATCTGGCCGTTGGGGATAGGGTCATGATGTTATCCGACGGACGTGGAGAGTTAGGCAATGCACTTGGTGTCTCTCTCAATCTCAACACGACGACTAACGCTTGTTTGGTTACCTTCAACGGTGTGATCAAAAGCGTTGAGTTTGACAAAGAAGAAGGTAGTCTCGTTGCTACCAAATCCATGGCCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Redoxin

Protein Analysis

242

Amino Acids

25.52

Weight (kDa)

9.74

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g39680
prunus_persica Prupe.1G378100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0301191
rosa_laevigata RLG00000011269
rosa_multiflora Rmu_sc0002592.1_g000003
rosa_roxburghii Rroxscaffold_171G00441350 Rroxscaffold_7G00167060
rosa_rugosa Rorug06G0302300
rosa_samantha Rh6AG415600 Rh6BG422500 Rh6CG430100 Rh6DG415400 Rh6DG415500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 412
AccII CGCG 1 cut(s) 497
AciI CCGC 3 cut(s) 247, 425, 497
AclWI GGATC 1 cut(s) 171
AcoI YGGCCR 2 cut(s) 498, 540
AcyI GRCGYC 1 cut(s) 413
AdeI CACNNNGTG 1 cut(s) 602
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 3 cut(s) 165, 221, 344
AflIII ACRYGT 1 cut(s) 507
AgsI TTSAA 3 cut(s) 84, 455, 652
AjiI CACGTC 2 cut(s) 508, 578
AluBI AGCT 5 cut(s) 29, 103, 307, 355, 474
AluI AGCT 5 cut(s) 29, 103, 307, 355, 474
Alw21I GWGCWC 1 cut(s) 476
Alw26I GTCTC 2 cut(s) 610, 701
AlwI GGATC 1 cut(s) 171
AoxI GGCC 6 cut(s) 199, 208, 348, 498, 540, 717
ApaI GGGCCC 1 cut(s) 212
ApeKI GCWGC 2 cut(s) 5, 26
AspA2I CCTAGG 1 cut(s) 164
AspLEI GCGC 1 cut(s) 415
AspS9I GGNCC 6 cut(s) 168, 200, 208, 209, 348, 718
AsuC2I CCSGG 1 cut(s) 207
AsuHPI GGTGA 3 cut(s) 83, 253, 542
AvaII GGWCC 1 cut(s) 168
AvrII CCTAGG 1 cut(s) 164
BaeGI GKGCMC 1 cut(s) 212
BanI GGYRCC 1 cut(s) 412
BanII GRGCYC 2 cut(s) 212, 476
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 476
BbvI GCAGC 1 cut(s) 38
BccI CCATC 3 cut(s) 137, 236, 249
BceAI ACGGC 2 cut(s) 400, 527
BcgI CGANNNNNNTGC 4 cut(s) 373, 407, 416, 450
BclI TGATCA 2 cut(s) 258, 660
BcnI CCSGG 1 cut(s) 207
BcoDI GTCTC 2 cut(s) 610, 701
BfaI CTAG 1 cut(s) 165
BfoI RGCGCY 1 cut(s) 416
BglI GCCNNNNNGGC 1 cut(s) 207
BisI GCNGC 3 cut(s) 6, 27, 498
BlnI CCTAGG 1 cut(s) 164
BlsI GCNGC 3 cut(s) 7, 28, 499
Bme1390I CCNGG 1 cut(s) 207
Bme18I GGWCC 1 cut(s) 168
BmgBI CACGTC 2 cut(s) 508, 578
BmgT120I GGNCC 6 cut(s) 168, 200, 208, 209, 348, 718
BmiI GGNNCC 6 cut(s) 146, 170, 210, 226, 349, 414
BmrFI CCNGG 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 66
BpuMI CCSGG 1 cut(s) 207
BsaHI GRCGYC 1 cut(s) 413
BsaJI CCNNGG 3 cut(s) 140, 164, 714
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bsc4I CCNNNNNNNGG 3 cut(s) 165, 221, 344
Bse3DI GCAATG 3 cut(s) 21, 427, 598
BseDI CCNNGG 3 cut(s) 140, 164, 714
BseGI GGATG 2 cut(s) 53, 241
BseLI CCNNNNNNNGG 3 cut(s) 165, 221, 344
BseMI GCAATG 3 cut(s) 21, 427, 598
BseMII CTCAG 1 cut(s) 300
BseSI GKGCMC 1 cut(s) 212
BseXI GCAGC 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 497
BshFI GGCC 6 cut(s) 201, 210, 350, 500, 542, 719
BshNI GGYRCC 1 cut(s) 412
BsiHKAI GWGCWC 1 cut(s) 476
BsiSI CCGG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 3 cut(s) 165, 221, 344
BsmAI GTCTC 2 cut(s) 610, 701
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 6 cut(s) 201, 210, 350, 500, 542, 719
Bsp120I GGGCCC 1 cut(s) 208
Bsp1286I GDGCHC 2 cut(s) 212, 476
Bsp143I GATC 4 cut(s) 176, 258, 483, 660
Bsp19I CCATGG 1 cut(s) 714
BspACI CCGC 3 cut(s) 247, 425, 497
BspANI GGCC 6 cut(s) 201, 210, 350, 500, 542, 719
BspCNI CTCAG 1 cut(s) 299
BspFNI CGCG 1 cut(s) 497
BspHI TCATGA 2 cut(s) 441, 558
BspLI GGNNCC 6 cut(s) 146, 170, 210, 226, 349, 414
BspPI GGATC 1 cut(s) 171
BspT107I GGYRCC 1 cut(s) 412
BsrDI GCAATG 3 cut(s) 21, 427, 598
BssECI CCNNGG 3 cut(s) 140, 164, 714
BssMI GATC 4 cut(s) 176, 258, 483, 660
BssNI GRCGYC 1 cut(s) 413
BssT1I CCWWGG 3 cut(s) 140, 164, 714
Bst4CI ACNGT 3 cut(s) 43, 238, 656
BstACI GRCGYC 1 cut(s) 413
BstC8I GCNNGC 2 cut(s) 490, 502
BstDEI CTNAG 1 cut(s) 286
BstDSI CCRYGG 1 cut(s) 714
BstEII GGTNACC 1 cut(s) 643
BstF5I GGATG 2 cut(s) 53, 241
BstFNI CGCG 1 cut(s) 497
BstH2I RGCGCY 1 cut(s) 416
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 4 cut(s) 179, 261, 486, 663
BstMAI GTCTC 2 cut(s) 610, 701
BstMBI GATC 4 cut(s) 176, 258, 483, 660
BstMWI GCNNNNNNNGC 3 cut(s) 35, 207, 494
BstPI GGTNACC 1 cut(s) 643
BstSCI CCNGG 1 cut(s) 205
BstSLI GKGCMC 1 cut(s) 212
BstUI CGCG 1 cut(s) 497
BstV1I GCAGC 1 cut(s) 38
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 176
BstXI CCANNNNNNTGG 1 cut(s) 715
BstYI RGATCY 1 cut(s) 176
BsuRI GGCC 6 cut(s) 201, 210, 350, 500, 542, 719
BtgI CCRYGG 1 cut(s) 714
BtrI CACGTC 2 cut(s) 508, 578
BtsCI GGATG 2 cut(s) 53, 241
BtsIMutI CAGTG 1 cut(s) 721
Cac8I GCNNGC 2 cut(s) 490, 502
CciI TCATGA 2 cut(s) 441, 558
CfoI GCGC 1 cut(s) 415
Cfr13I GGNCC 6 cut(s) 168, 200, 208, 209, 348, 718
CseI GACGC 1 cut(s) 481
Csp6I GTAC 1 cut(s) 44
CviAII CATG 3 cut(s) 442, 559, 715
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 1 cut(s) 286
DinI GGCGCC 1 cut(s) 414
DpnI GATC 4 cut(s) 178, 260, 485, 662
DpnII GATC 4 cut(s) 176, 258, 483, 660
DraIII CACNNNGTG 1 cut(s) 602
EaeI YGGCCR 2 cut(s) 498, 540
Ecl136II GAGCTC 1 cut(s) 474
Eco130I CCWWGG 3 cut(s) 140, 164, 714
Eco24I GRGCYC 2 cut(s) 212, 476
Eco47I GGWCC 1 cut(s) 168
Eco53kI GAGCTC 1 cut(s) 474
Eco91I GGTNACC 1 cut(s) 643
EcoICRI GAGCTC 1 cut(s) 474
EcoO109I RGGNCCY 1 cut(s) 168
EcoO65I GGTNACC 1 cut(s) 643
EcoT14I CCWWGG 3 cut(s) 140, 164, 714
EcoT38I GRGCYC 2 cut(s) 212, 476
EgeI GGCGCC 1 cut(s) 414
EheI GGCGCC 1 cut(s) 414
ErhI CCWWGG 3 cut(s) 140, 164, 714
FaeI CATG 3 cut(s) 445, 562, 718
FaiI YATR 6 cut(s) 198, 296, 317, 443, 560, 716
FaqI GGGAC 1 cut(s) 154
FatI CATG 3 cut(s) 441, 558, 714
FauI CCCGC 1 cut(s) 254
FbaI TGATCA 2 cut(s) 258, 660
Fnu4HI GCNGC 3 cut(s) 6, 27, 498
FokI GGATG 2 cut(s) 40, 228
FriOI GRGCYC 2 cut(s) 212, 476
Fsp4HI GCNGC 3 cut(s) 6, 27, 498
FspBI CTAG 1 cut(s) 165
GlaI GCGC 1 cut(s) 414
GluI GCNGC 3 cut(s) 6, 27, 498
HaeII RGCGCY 1 cut(s) 416
HaeIII GGCC 6 cut(s) 201, 210, 350, 500, 542, 719
HapII CCGG 1 cut(s) 206
HgaI GACGC 1 cut(s) 481
HhaI GCGC 1 cut(s) 415
Hin1I GRCGYC 1 cut(s) 413
Hin1II CATG 3 cut(s) 445, 562, 718
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 3 cut(s) 390, 455, 535
HpaI GTTAAC 1 cut(s) 16
HpaII CCGG 1 cut(s) 206
HphI GGTGA 3 cut(s) 83, 253, 542
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 2 cut(s) 478, 571
Hpy188III TCNNGA 2 cut(s) 442, 559
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 5 cut(s) 347, 497, 509, 575, 628
HpyAV CCTTC 4 cut(s) 194, 292, 658, 683
HpyCH4III ACNGT 3 cut(s) 43, 238, 656
HpyCH4IV ACGT 2 cut(s) 507, 577
HpyCH4V TGCA 6 cut(s) 26, 38, 294, 378, 432, 596
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 207, 494
HpyF3I CTNAG 1 cut(s) 286
HpySE526I ACGT 2 cut(s) 507, 577
Hsp92I GRCGYC 1 cut(s) 413
Hsp92II CATG 3 cut(s) 445, 562, 718
HspAI GCGC 1 cut(s) 413
KasI GGCGCC 1 cut(s) 412
Ksp22I TGATCA 2 cut(s) 258, 660
KspAI GTTAAC 1 cut(s) 16
Kzo9I GATC 4 cut(s) 176, 258, 483, 660
LmnI GCTCC 2 cut(s) 230, 312
LpnPI CCDG 5 cut(s) 219, 266, 502, 514, 524
Lsp1109I GCAGC 1 cut(s) 38
MaeI CTAG 1 cut(s) 165
MaeII ACGT 2 cut(s) 507, 577
MaeIII GTNAC 1 cut(s) 643
MalI GATC 4 cut(s) 178, 260, 485, 662
MboI GATC 4 cut(s) 176, 258, 483, 660
MboII GAAGA 4 cut(s) 66, 69, 72, 698
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 2 cut(s) 212, 476
Mly113I GGCGCC 1 cut(s) 413
MlyI GAGTC 1 cut(s) 399
MmeI TCCRAC 1 cut(s) 594
MseI TTAA 1 cut(s) 15
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 207
MvnI CGCG 1 cut(s) 497
MwoI GCNNNNNNNGC 3 cut(s) 35, 207, 494
NarI GGCGCC 1 cut(s) 413
NciI CCSGG 1 cut(s) 207
NcoI CCATGG 1 cut(s) 714
NdeII GATC 4 cut(s) 176, 258, 483, 660
NlaIII CATG 3 cut(s) 445, 562, 718
NlaIV GGNNCC 6 cut(s) 146, 170, 210, 226, 349, 414
PagI TCATGA 2 cut(s) 441, 558
PcsI WCGNNNNNNNCGW 2 cut(s) 339, 501
PfeI GAWTC 2 cut(s) 455, 535
PkrI GCNGC 3 cut(s) 7, 28, 499
PleI GAGTC 1 cut(s) 398
PluTI GGCGCC 1 cut(s) 416
PpsI GAGTC 1 cut(s) 398
PpuMI RGGWCCY 1 cut(s) 168
Psp124BI GAGCTC 1 cut(s) 476
Psp5II RGGWCCY 1 cut(s) 168
PspEI GGTNACC 1 cut(s) 643
PspN4I GGNNCC 6 cut(s) 146, 170, 210, 226, 349, 414
PspOMI GGGCCC 1 cut(s) 208
PspPI GGNCC 6 cut(s) 168, 200, 208, 209, 348, 718
PspPPI RGGWCCY 1 cut(s) 168
PsuI RGATCY 1 cut(s) 176
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
SacI GAGCTC 1 cut(s) 476
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 3 cut(s) 6, 27, 498
Sau3AI GATC 4 cut(s) 176, 258, 483, 660
Sau96I GGNCC 6 cut(s) 168, 200, 208, 209, 348, 718
SchI GAGTC 1 cut(s) 399
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 2 cut(s) 212, 476
SfiI GGCCNNNNNGGCC 1 cut(s) 207
SfoI GGCGCC 1 cut(s) 414
SinI GGWCC 1 cut(s) 168
SsiI CCGC 3 cut(s) 247, 425, 497
SspDI GGCGCC 1 cut(s) 412
SspMI CTAG 1 cut(s) 165
SstI GAGCTC 1 cut(s) 476
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 3 cut(s) 140, 164, 714
TaaI ACNGT 3 cut(s) 43, 238, 656
TaiI ACGT 2 cut(s) 510, 580
TaqI TCGA 1 cut(s) 333
TauI GCSGC 1 cut(s) 500
TfiI GAWTC 2 cut(s) 455, 535
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TseI GCWGC 2 cut(s) 5, 26
TspDTI ATGAA 3 cut(s) 57, 430, 458
TspGWI ACGGA 1 cut(s) 588
VpaK11BI GGWCC 1 cut(s) 168
XmaJI CCTAGG 1 cut(s) 164
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.