Rroxscaffold_171G00441350

Redoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000171
OG0017254
Physical Location & Seq
Reverse (-)
19510 .. 20226
717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_171G00441350.1

Sequence Viewer

Length: 717 bp
ATGGCCGCCTCTGTTAACAACATCGCAGCAACATTCGCCACCGTCCCAGTTACGTCGTCTTCATCTTCCTCAAATCCTCACCAAACAAACTTCTCAATTTCAACGTCTCACAAAACCATCTCCGCCTCTTGTAACCTCCGCAAACCCAATTTCAGGGCCCAATCGTCCCCCCTTCTCAGCCTTTATGGCCCACCCGGCCCACGACCCGATCGGTCCATCTCGACCAGAACGATCACCAAGCCAACCAAACTCCCATTCTCAGCAGGCGATAAGCTCCCGAATGCAGCCCTCTCGTACCTCAACCGAAACGACGTCGTTAAATCCGTCACTCTCTCCAGCCTCTGCAAGGGAAAGAGAGTCCTTTTGGTGGGCGTAACGTCGCCGTTCTCGCCGGGTTGCACTCGGTTCGTCAAACGAGTTAAATCGGAGAGGGAGAAAACTGTGGAGGTAATCGCCTGCTTCGCGGTCAGCGACGTTTTCGTGATGCGTGCCTGGGGAGAGATCCTGGCCGTTGGTGAGAGAGTGATGATGTTGTGCGACGGTCTAGGAGAGCTGACCAGGGCACTTGGCGTCTCTCTCAACGGAGCCGTTAAAGCTTGTCTCGGCTTAGGTGTACGGTCCAGGAGGTTTTGCCTGGCTTCTTTCAACGGGGTGATCACAAACGTTGACTTTGACGAAGAAGAAGAAGAAGAAAGCGCCCTGATTTCTTCCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Redoxin

Protein Analysis

238

Amino Acids

25.48

Weight (kDa)

9.42

Isoelectric Point (pI)

52.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Redoxin PF08534 88 - 231 8.4e-19 Redoxin
AhpC-TSA PF00578 89 - 194 2.9e-06 AhpC/TSA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g39680
prunus_persica Prupe.1G378100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0301191
rosa_laevigata RLG00000011269
rosa_multiflora Rmu_sc0002592.1_g000003
rosa_roxburghii Rroxscaffold_171G00441350 Rroxscaffold_7G00167060
rosa_rugosa Rorug06G0302300
rosa_samantha Rh6AG415600 Rh6BG422500 Rh6CG430100 Rh6DG415400 Rh6DG415500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 315
AccII CGCG 1 cut(s) 464
AciI CCGC 4 cut(s) 6, 123, 139, 464
AclI AACGTT 1 cut(s) 663
AclWI GGATC 1 cut(s) 496
AcoI YGGCCR 2 cut(s) 3, 507
AcyI GRCGYC 2 cut(s) 312, 570
AfaI GTAC 2 cut(s) 296, 615
AfiI CCNNNNNNNGG 3 cut(s) 153, 346, 367
AgsI TTSAA 2 cut(s) 102, 646
AjnI CCWGG 5 cut(s) 491, 504, 557, 620, 633
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AluBI AGCT 3 cut(s) 274, 553, 596
AluI AGCT 3 cut(s) 274, 553, 596
Alw26I GTCTC 3 cut(s) 111, 577, 605
AlwI GGATC 1 cut(s) 496
AlwNI CAGNNNCTG 1 cut(s) 342
AoxI GGCC 5 cut(s) 3, 156, 187, 196, 507
ApaI GGGCCC 1 cut(s) 160
ApeKI GCWGC 2 cut(s) 26, 284
AspLEI GCGC 1 cut(s) 698
AspS9I GGNCC 6 cut(s) 156, 157, 188, 197, 213, 618
AsuC2I CCSGG 2 cut(s) 195, 393
AsuHPI GGTGA 4 cut(s) 71, 226, 527, 664
AvaII GGWCC 2 cut(s) 213, 618
BaeGI GKGCMC 2 cut(s) 160, 565
BanII GRGCYC 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 51
BbvI GCAGC 2 cut(s) 38, 296
BccI CCATC 2 cut(s) 125, 224
BceAI ACGGC 3 cut(s) 367, 494, 572
BcgI CGANNNNNNTGC 4 cut(s) 273, 307, 388, 422
BciT130I CCWGG 5 cut(s) 493, 506, 559, 622, 635
BclI TGATCA 1 cut(s) 654
BcnI CCSGG 2 cut(s) 195, 393
BcoDI GTCTC 3 cut(s) 111, 577, 605
BfaI CTAG 1 cut(s) 545
BfoI RGCGCY 1 cut(s) 699
BglI GCCNNNNNGGC 2 cut(s) 186, 195
BisI GCNGC 3 cut(s) 6, 27, 285
BlsI GCNGC 3 cut(s) 7, 28, 286
Bme1390I CCNGG 7 cut(s) 195, 393, 493, 506, 559, 622, 635
Bme18I GGWCC 2 cut(s) 213, 618
BmgT120I GGNCC 6 cut(s) 156, 157, 188, 197, 213, 618
BmiI GGNNCC 2 cut(s) 158, 586
BmrFI CCNGG 7 cut(s) 195, 393, 493, 506, 559, 622, 635
BmrI ACTGGG 2 cut(s) 41, 706
BmsI GCATC 1 cut(s) 474
BmuI ACTGGG 2 cut(s) 41, 706
BpiI GAAGAC 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 319
Bpu10I CCTNAGC 1 cut(s) 607
BpuMI CCSGG 2 cut(s) 195, 393
BsaHI GRCGYC 2 cut(s) 312, 570
BsaJI CCNNGG 2 cut(s) 492, 558
Bsc4I CCNNNNNNNGG 3 cut(s) 153, 346, 367
Bse1I ACTGG 2 cut(s) 47, 712
BseBI CCWGG 5 cut(s) 493, 506, 559, 622, 635
BseDI CCNNGG 2 cut(s) 492, 558
BseLI CCNNNNNNNGG 3 cut(s) 153, 346, 367
BseMII CTCAG 2 cut(s) 190, 273
BseNI ACTGG 2 cut(s) 47, 712
BseSI GKGCMC 2 cut(s) 160, 565
BseXI GCAGC 2 cut(s) 38, 296
Bsh1236I CGCG 1 cut(s) 464
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 5 cut(s) 5, 158, 189, 198, 509
BsiEI CGRYCG 1 cut(s) 211
BsiSI CCGG 2 cut(s) 195, 392
BslFI GGGAC 2 cut(s) 29, 151
BslI CCNNNNNNNGG 3 cut(s) 153, 346, 367
BsmAI GTCTC 3 cut(s) 111, 577, 605
BsmBI CGTCTC 2 cut(s) 111, 577
BsmFI GGGAC 2 cut(s) 29, 151
BsmI GAATGC 1 cut(s) 286
BsnI GGCC 5 cut(s) 5, 158, 189, 198, 509
Bsp120I GGGCCC 1 cut(s) 156
Bsp1286I GDGCHC 2 cut(s) 160, 565
Bsp143I GATC 4 cut(s) 208, 231, 501, 654
BspACI CCGC 4 cut(s) 6, 123, 139, 464
BspANI GGCC 5 cut(s) 5, 158, 189, 198, 509
BspCNI CTCAG 2 cut(s) 189, 272
BspFNI CGCG 1 cut(s) 464
BspLI GGNNCC 2 cut(s) 158, 586
BspPI GGATC 1 cut(s) 496
BsrI ACTGG 2 cut(s) 47, 712
BssECI CCNNGG 2 cut(s) 492, 558
BssMI GATC 4 cut(s) 208, 231, 501, 654
BssNI GRCGYC 2 cut(s) 312, 570
Bst2UI CCWGG 5 cut(s) 493, 506, 559, 622, 635
Bst4CI ACNGT 4 cut(s) 43, 442, 542, 618
BstACI GRCGYC 2 cut(s) 312, 570
BstC8I GCNNGC 3 cut(s) 265, 457, 489
BstDEI CTNAG 3 cut(s) 176, 259, 607
BstENI CCTNNNNNAGG 1 cut(s) 344
BstFNI CGCG 1 cut(s) 464
BstH2I RGCGCY 1 cut(s) 699
BstHHI GCGC 1 cut(s) 698
BstKTI GATC 4 cut(s) 211, 234, 504, 657
BstMAI GTCTC 3 cut(s) 111, 577, 605
BstMBI GATC 4 cut(s) 208, 231, 501, 654
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 6 cut(s) 35, 186, 195, 388, 461, 593
BstNI CCWGG 5 cut(s) 493, 506, 559, 622, 635
BstSCI CCNGG 7 cut(s) 193, 391, 491, 504, 557, 620, 633
BstSLI GKGCMC 2 cut(s) 160, 565
BstUI CGCG 1 cut(s) 464
BstV1I GCAGC 2 cut(s) 38, 296
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 501
BstYI RGATCY 1 cut(s) 501
BsuRI GGCC 5 cut(s) 5, 158, 189, 198, 509
BtgZI GCGATG 1 cut(s) 7
Cac8I GCNNGC 3 cut(s) 265, 457, 489
CaiI CAGNNNCTG 1 cut(s) 342
CfoI GCGC 1 cut(s) 698
Cfr13I GGNCC 6 cut(s) 156, 157, 188, 197, 213, 618
CseI GACGC 1 cut(s) 559
Csp6I GTAC 2 cut(s) 295, 614
CviQI GTAC 2 cut(s) 295, 614
DdeI CTNAG 3 cut(s) 176, 259, 607
DpnI GATC 4 cut(s) 210, 233, 503, 656
DpnII GATC 4 cut(s) 208, 231, 501, 654
EaeI YGGCCR 2 cut(s) 3, 507
EciI GGCGGA 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 160
Eco47I GGWCC 2 cut(s) 213, 618
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 156
EcoRII CCWGG 5 cut(s) 491, 504, 557, 620, 633
EcoT38I GRGCYC 1 cut(s) 160
Esp3I CGTCTC 2 cut(s) 111, 577
FaiI YATR 1 cut(s) 186
FaqI GGGAC 2 cut(s) 29, 151
FbaI TGATCA 1 cut(s) 654
Fnu4HI GCNGC 3 cut(s) 6, 27, 285
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 3 cut(s) 6, 27, 285
FspBI CTAG 1 cut(s) 545
GlaI GCGC 1 cut(s) 697
GluI GCNGC 3 cut(s) 6, 27, 285
GsuI CTGGAG 1 cut(s) 319
HaeII RGCGCY 1 cut(s) 699
HaeIII GGCC 5 cut(s) 5, 158, 189, 198, 509
HapII CCGG 2 cut(s) 195, 392
HgaI GACGC 1 cut(s) 559
HhaI GCGC 1 cut(s) 698
Hin1I GRCGYC 2 cut(s) 312, 570
Hin6I GCGC 1 cut(s) 696
HinP1I GCGC 1 cut(s) 696
HincII GTYRAC 2 cut(s) 16, 667
HindII GTYRAC 2 cut(s) 16, 667
HindIII AAGCTT 1 cut(s) 594
HinfI GANTC 1 cut(s) 357
HpaI GTTAAC 1 cut(s) 16
HpaII CCGG 2 cut(s) 195, 392
HphI GGTGA 4 cut(s) 71, 226, 527, 664
Hpy166II GTNNAC 3 cut(s) 16, 614, 667
Hpy188I TCNGA 1 cut(s) 427
Hpy188III TCNNGA 3 cut(s) 220, 277, 481
Hpy8I GTNNAC 3 cut(s) 16, 614, 667
Hpy99I CGWCG 6 cut(s) 58, 314, 317, 382, 476, 542
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 4 cut(s) 43, 442, 542, 618
HpyCH4IV ACGT 6 cut(s) 53, 104, 312, 377, 474, 663
HpyCH4V TGCA 3 cut(s) 284, 345, 399
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 186, 195, 388, 461, 593
HpyF3I CTNAG 3 cut(s) 176, 259, 607
HpySE526I ACGT 6 cut(s) 53, 104, 312, 377, 474, 663
Hsp92I GRCGYC 2 cut(s) 312, 570
HspAI GCGC 1 cut(s) 696
Ksp22I TGATCA 1 cut(s) 654
KspAI GTTAAC 1 cut(s) 16
Kzo9I GATC 4 cut(s) 208, 231, 501, 654
LmnI GCTCC 2 cut(s) 279, 584
Lsp1109I GCAGC 2 cut(s) 38, 296
LweI GCATC 1 cut(s) 474
MaeI CTAG 1 cut(s) 545
MaeII ACGT 6 cut(s) 53, 104, 312, 377, 474, 663
MaeIII GTNAC 4 cut(s) 49, 131, 325, 373
MalI GATC 4 cut(s) 210, 233, 503, 656
MboI GATC 4 cut(s) 208, 231, 501, 654
MboII GAAGA 8 cut(s) 51, 57, 689, 692, 695, 698, 699, 701
MflI RGATCY 1 cut(s) 501
MhlI GDGCHC 2 cut(s) 160, 565
MluCI AATT 2 cut(s) 96, 148
MlyI GAGTC 1 cut(s) 366
MseI TTAA 4 cut(s) 15, 318, 420, 591
MspI CCGG 2 cut(s) 195, 392
MspR9I CCNGG 7 cut(s) 195, 393, 493, 506, 559, 622, 635
Mva1269I GAATGC 1 cut(s) 286
MvaI CCWGG 5 cut(s) 493, 506, 559, 622, 635
MvnI CGCG 1 cut(s) 464
MwoI GCNNNNNNNGC 6 cut(s) 35, 186, 195, 388, 461, 593
NciI CCSGG 2 cut(s) 195, 393
NdeII GATC 4 cut(s) 208, 231, 501, 654
NlaIV GGNNCC 2 cut(s) 158, 586
NmeAIII GCCGAG 1 cut(s) 582
NmuCI GTSAC 1 cut(s) 325
PcsI WCGNNNNNNNCGW 3 cut(s) 227, 321, 468
PctI GAATGC 1 cut(s) 286
PfoI TCCNGGA 1 cut(s) 620
PkrI GCNGC 3 cut(s) 7, 28, 286
Ple19I CGATCG 1 cut(s) 211
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
Psp1406I AACGTT 1 cut(s) 663
Psp6I CCWGG 5 cut(s) 491, 504, 557, 620, 633
PspGI CCWGG 5 cut(s) 491, 504, 557, 620, 633
PspN4I GGNNCC 2 cut(s) 158, 586
PspOMI GGGCCC 1 cut(s) 156
PspPI GGNCC 6 cut(s) 156, 157, 188, 197, 213, 618
PstNI CAGNNNCTG 1 cut(s) 342
PsuI RGATCY 1 cut(s) 501
PvuI CGATCG 1 cut(s) 211
RsaI GTAC 2 cut(s) 296, 615
RsaNI GTAC 2 cut(s) 295, 614
SaqAI TTAA 4 cut(s) 15, 318, 420, 591
SatI GCNGC 3 cut(s) 6, 27, 285
Sau3AI GATC 4 cut(s) 208, 231, 501, 654
Sau96I GGNCC 6 cut(s) 156, 157, 188, 197, 213, 618
SchI GAGTC 1 cut(s) 366
ScrFI CCNGG 7 cut(s) 195, 393, 493, 506, 559, 622, 635
SduI GDGCHC 2 cut(s) 160, 565
SfaNI GCATC 1 cut(s) 474
SfiI GGCCNNNNNGGCC 1 cut(s) 195
SinI GGWCC 2 cut(s) 213, 618
Sse9I AATT 2 cut(s) 96, 148
SsiI CCGC 4 cut(s) 6, 123, 139, 464
SspMI CTAG 1 cut(s) 545
StyD4I CCNGG 7 cut(s) 193, 391, 491, 504, 557, 620, 633
TaaI ACNGT 4 cut(s) 43, 442, 542, 618
TaiI ACGT 6 cut(s) 56, 107, 315, 380, 477, 666
TaqI TCGA 1 cut(s) 221
TaqII GACCGA 1 cut(s) 201
TasI AATT 2 cut(s) 96, 148
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 4 cut(s) 15, 318, 420, 591
Tru9I TTAA 4 cut(s) 15, 318, 420, 591
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 2 cut(s) 26, 284
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 1 cut(s) 51
TspGWI ACGGA 2 cut(s) 313, 597
VpaK11BI GGWCC 2 cut(s) 213, 618
XagI CCTNNNNNAGG 1 cut(s) 344
XspI CTAG 1 cut(s) 545
ZraI GACGTC 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.