Rmu_sc0002592.1_g000003

Redoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002592.1
OG0017254
Physical Location & Seq
Reverse (-)
5475 .. 6044
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002592.1_g000003.1.cds

Sequence Viewer

Length: 570 bp
atggccgcctctgttaacaacatcgcagcaacattcgccaccgtcccagttacgtcgtcttcatcttcctcaaatcctcaccaaacaaacttctcaatttcaacgtctcacaaatccatctccgcctcttgtaacctccgcaaacccaatttcagggcccaatcatccccccttctcagcctttatggcccacccggcccacgacccgatcagtccatctcgaccagaacgatcaccaagccaaccaaactcccattctcagcaggcgataagctcccgaatgcatccctctcgtacctcaaccgaaacgacgtcgttaaatccgtcactctctccagcctttgcaagggaaagagagtcgttttggttggcgtaacggcgccgttctcgccgggttgcactcggttcgtcaaacgagttaaatcggcgagggagaaaactgcggaggtgatcgcctgcttcgcggtcagcgacgttttcgtgatgcgcgcctggggagagatcctgaccgtttgtgagagagtgatgatgctgtgcgacggtctaggagagctgaccagggcactttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Redoxin

Protein Analysis

189

Amino Acids

20.21

Weight (kDa)

9.99

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g39680
prunus_persica Prupe.1G378100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0301191
rosa_laevigata RLG00000011269
rosa_multiflora Rmu_sc0002592.1_g000003
rosa_roxburghii Rroxscaffold_171G00441350 Rroxscaffold_7G00167060
rosa_rugosa Rorug06G0302300
rosa_samantha Rh6AG415600 Rh6BG422500 Rh6CG430100 Rh6DG415400 Rh6DG415500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 315
AccB1I GGYRCC 1 cut(s) 379
AccII CGCG 2 cut(s) 464, 489
AciI CCGC 5 cut(s) 6, 123, 139, 443, 464
AclWI GGATC 1 cut(s) 496
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 2 cut(s) 312, 380
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 2 cut(s) 153, 346
AgsI TTSAA 1 cut(s) 102
AjnI CCWGG 2 cut(s) 491, 557
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AluBI AGCT 2 cut(s) 274, 553
AluI AGCT 2 cut(s) 274, 553
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 1 cut(s) 496
AoxI GGCC 4 cut(s) 3, 156, 187, 196
ApaI GGGCCC 1 cut(s) 160
ApeKI GCWGC 1 cut(s) 26
AspLEI GCGC 3 cut(s) 382, 489, 491
AspS9I GGNCC 4 cut(s) 156, 157, 188, 197
AsuC2I CCSGG 2 cut(s) 195, 393
AsuHPI GGTGA 3 cut(s) 71, 226, 460
BaeGI GKGCMC 2 cut(s) 160, 565
BanI GGYRCC 1 cut(s) 379
BanII GRGCYC 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 38
BccI CCATC 2 cut(s) 125, 224
BceAI ACGGC 2 cut(s) 367, 393
BcgI CGANNNNNNTGC 4 cut(s) 273, 307, 388, 422
BciT130I CCWGG 2 cut(s) 493, 559
BcnI CCSGG 2 cut(s) 195, 393
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 1 cut(s) 545
BfoI RGCGCY 1 cut(s) 383
BglI GCCNNNNNGGC 2 cut(s) 186, 195
BisI GCNGC 2 cut(s) 6, 27
BlsI GCNGC 2 cut(s) 7, 28
Bme1390I CCNGG 4 cut(s) 195, 393, 493, 559
BmgT120I GGNCC 4 cut(s) 156, 157, 188, 197
BmiI GGNNCC 2 cut(s) 158, 381
BmrFI CCNGG 4 cut(s) 195, 393, 493, 559
BmrI ACTGGG 1 cut(s) 41
BmsI GCATC 3 cut(s) 293, 474, 519
BmuI ACTGGG 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 319
BpuMI CCSGG 2 cut(s) 195, 393
BsaHI GRCGYC 2 cut(s) 312, 380
BsaJI CCNNGG 2 cut(s) 492, 558
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 346
Bse1I ACTGG 1 cut(s) 47
BseBI CCWGG 2 cut(s) 493, 559
BseDI CCNNGG 2 cut(s) 492, 558
BseGI GGATG 2 cut(s) 164, 284
BseLI CCNNNNNNNGG 2 cut(s) 153, 346
BseMII CTCAG 2 cut(s) 190, 273
BseNI ACTGG 1 cut(s) 47
BsePI GCGCGC 1 cut(s) 487
BseSI GKGCMC 2 cut(s) 160, 565
BseXI GCAGC 1 cut(s) 38
Bsh1236I CGCG 2 cut(s) 464, 489
BshFI GGCC 4 cut(s) 5, 158, 189, 198
BshNI GGYRCC 1 cut(s) 379
BsiSI CCGG 2 cut(s) 195, 392
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 2 cut(s) 153, 346
BsmAI GTCTC 1 cut(s) 111
BsmBI CGTCTC 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 29
BsmI GAATGC 1 cut(s) 286
BsnI GGCC 4 cut(s) 5, 158, 189, 198
Bsp120I GGGCCC 1 cut(s) 156
Bsp1286I GDGCHC 2 cut(s) 160, 565
Bsp143I GATC 4 cut(s) 208, 231, 450, 501
BspACI CCGC 5 cut(s) 6, 123, 139, 443, 464
BspANI GGCC 4 cut(s) 5, 158, 189, 198
BspCNI CTCAG 2 cut(s) 189, 272
BspFNI CGCG 2 cut(s) 464, 489
BspLI GGNNCC 2 cut(s) 158, 381
BspPI GGATC 1 cut(s) 496
BspT107I GGYRCC 1 cut(s) 379
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 492, 558
BssHII GCGCGC 1 cut(s) 487
BssMI GATC 4 cut(s) 208, 231, 450, 501
BssNI GRCGYC 2 cut(s) 312, 380
Bst2UI CCWGG 2 cut(s) 493, 559
Bst4CI ACNGT 3 cut(s) 43, 511, 542
BstACI GRCGYC 2 cut(s) 312, 380
BstC8I GCNNGC 3 cut(s) 265, 457, 489
BstDEI CTNAG 2 cut(s) 176, 259
BstENI CCTNNNNNAGG 1 cut(s) 344
BstF5I GGATG 2 cut(s) 164, 284
BstFNI CGCG 2 cut(s) 464, 489
BstH2I RGCGCY 1 cut(s) 383
BstHHI GCGC 3 cut(s) 382, 489, 491
BstKTI GATC 4 cut(s) 211, 234, 453, 504
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 4 cut(s) 208, 231, 450, 501
BstMWI GCNNNNNNNGC 5 cut(s) 35, 186, 195, 388, 461
BstNI CCWGG 2 cut(s) 493, 559
BstSCI CCNGG 4 cut(s) 193, 391, 491, 557
BstSLI GKGCMC 2 cut(s) 160, 565
BstUI CGCG 2 cut(s) 464, 489
BstV1I GCAGC 1 cut(s) 38
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 501
BstYI RGATCY 1 cut(s) 501
BsuRI GGCC 4 cut(s) 5, 158, 189, 198
BtgZI GCGATG 1 cut(s) 7
BtsCI GGATG 2 cut(s) 164, 284
Cac8I GCNNGC 3 cut(s) 265, 457, 489
CfoI GCGC 3 cut(s) 382, 489, 491
Cfr13I GGNCC 4 cut(s) 156, 157, 188, 197
Csp6I GTAC 1 cut(s) 295
CviJI RGCY 9 cut(s) 5, 158, 180, 189, 198, 241, 274, 339, 553
CviKI_1 RGCY 9 cut(s) 5, 158, 180, 189, 198, 241, 274, 339, 553
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 2 cut(s) 176, 259
DinI GGCGCC 1 cut(s) 381
DpnI GATC 4 cut(s) 210, 233, 452, 503
DpnII GATC 4 cut(s) 208, 231, 450, 501
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 160
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 156
EcoRII CCWGG 2 cut(s) 491, 557
EcoT22I ATGCAT 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 160
EgeI GGCGCC 1 cut(s) 381
EheI GGCGCC 1 cut(s) 381
Esp3I CGTCTC 1 cut(s) 111
FaiI YATR 1 cut(s) 186
FaqI GGGAC 1 cut(s) 29
Fnu4HI GCNGC 2 cut(s) 6, 27
FokI GGATG 2 cut(s) 151, 271
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 2 cut(s) 6, 27
FspBI CTAG 1 cut(s) 545
GlaI GCGC 3 cut(s) 381, 488, 490
GluI GCNGC 2 cut(s) 6, 27
GsuI CTGGAG 1 cut(s) 319
HaeII RGCGCY 1 cut(s) 383
HaeIII GGCC 4 cut(s) 5, 158, 189, 198
HapII CCGG 2 cut(s) 195, 392
HhaI GCGC 3 cut(s) 382, 489, 491
Hin1I GRCGYC 2 cut(s) 312, 380
Hin6I GCGC 3 cut(s) 380, 487, 489
HinP1I GCGC 3 cut(s) 380, 487, 489
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 1 cut(s) 357
HpaI GTTAAC 1 cut(s) 16
HpaII CCGG 2 cut(s) 195, 392
HphI GGTGA 3 cut(s) 71, 226, 460
Hpy166II GTNNAC 1 cut(s) 16
Hpy188III TCNNGA 4 cut(s) 220, 277, 481, 505
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 5 cut(s) 58, 314, 317, 476, 542
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 3 cut(s) 43, 511, 542
HpyCH4IV ACGT 4 cut(s) 53, 104, 312, 474
HpyCH4V TGCA 3 cut(s) 284, 345, 399
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 186, 195, 388, 461
HpyF3I CTNAG 2 cut(s) 176, 259
HpySE526I ACGT 4 cut(s) 53, 104, 312, 474
Hsp92I GRCGYC 2 cut(s) 312, 380
HspAI GCGC 3 cut(s) 380, 487, 489
KasI GGCGCC 1 cut(s) 379
KspAI GTTAAC 1 cut(s) 16
Kzo9I GATC 4 cut(s) 208, 231, 450, 501
LmnI GCTCC 1 cut(s) 279
Lsp1109I GCAGC 1 cut(s) 38
LweI GCATC 3 cut(s) 293, 474, 519
MaeI CTAG 1 cut(s) 545
MaeII ACGT 4 cut(s) 53, 104, 312, 474
MaeIII GTNAC 4 cut(s) 49, 131, 325, 373
MalI GATC 4 cut(s) 210, 233, 452, 503
MboI GATC 4 cut(s) 208, 231, 450, 501
MboII GAAGA 2 cut(s) 51, 57
MflI RGATCY 1 cut(s) 501
MhlI GDGCHC 2 cut(s) 160, 565
MluCI AATT 2 cut(s) 96, 148
Mly113I GGCGCC 1 cut(s) 380
MlyI GAGTC 1 cut(s) 366
MnlI CCTC 9 cut(s) 19, 79, 87, 136, 146, 299, 308, 423, 439
Mph1103I ATGCAT 1 cut(s) 286
MseI TTAA 3 cut(s) 15, 318, 420
MspI CCGG 2 cut(s) 195, 392
MspR9I CCNGG 4 cut(s) 195, 393, 493, 559
Mva1269I GAATGC 1 cut(s) 286
MvaI CCWGG 2 cut(s) 493, 559
MvnI CGCG 2 cut(s) 464, 489
MwoI GCNNNNNNNGC 5 cut(s) 35, 186, 195, 388, 461
NarI GGCGCC 1 cut(s) 380
NciI CCSGG 2 cut(s) 195, 393
NdeII GATC 4 cut(s) 208, 231, 450, 501
NlaIV GGNNCC 2 cut(s) 158, 381
NmuCI GTSAC 1 cut(s) 325
NsiI ATGCAT 1 cut(s) 286
PauI GCGCGC 1 cut(s) 487
PcsI WCGNNNNNNNCGW 3 cut(s) 227, 321, 468
PctI GAATGC 1 cut(s) 286
PkrI GCNGC 2 cut(s) 7, 28
PleI GAGTC 1 cut(s) 365
PluTI GGCGCC 1 cut(s) 383
PpsI GAGTC 1 cut(s) 365
Psp6I CCWGG 2 cut(s) 491, 557
PspGI CCWGG 2 cut(s) 491, 557
PspN4I GGNNCC 2 cut(s) 158, 381
PspOMI GGGCCC 1 cut(s) 156
PspPI GGNCC 4 cut(s) 156, 157, 188, 197
PsuI RGATCY 1 cut(s) 501
PteI GCGCGC 1 cut(s) 487
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SaqAI TTAA 3 cut(s) 15, 318, 420
SatI GCNGC 2 cut(s) 6, 27
Sau3AI GATC 4 cut(s) 208, 231, 450, 501
Sau96I GGNCC 4 cut(s) 156, 157, 188, 197
SchI GAGTC 1 cut(s) 366
ScrFI CCNGG 4 cut(s) 195, 393, 493, 559
SduI GDGCHC 2 cut(s) 160, 565
SetI ASST 9 cut(s) 56, 107, 138, 276, 300, 315, 450, 477, 555
SfaNI GCATC 3 cut(s) 293, 474, 519
SfiI GGCCNNNNNGGCC 1 cut(s) 195
SfoI GGCGCC 1 cut(s) 381
Sse9I AATT 2 cut(s) 96, 148
SsiI CCGC 5 cut(s) 6, 123, 139, 443, 464
SspDI GGCGCC 1 cut(s) 379
SspMI CTAG 1 cut(s) 545
StyD4I CCNGG 4 cut(s) 193, 391, 491, 557
TaaI ACNGT 3 cut(s) 43, 511, 542
TaiI ACGT 4 cut(s) 56, 107, 315, 477
TaqI TCGA 1 cut(s) 221
TasI AATT 2 cut(s) 96, 148
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 3 cut(s) 15, 318, 420
Tru9I TTAA 3 cut(s) 15, 318, 420
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 1 cut(s) 51
TspGWI ACGGA 1 cut(s) 313
XagI CCTNNNNNAGG 1 cut(s) 344
XspI CTAG 1 cut(s) 545
ZraI GACGTC 1 cut(s) 313
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.