RLG00000011269

Redoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017254
Physical Location & Seq
Reverse (-)
8110714 .. 8111445
732 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011269

Sequence Viewer

Length: 732 bp
ATGGCCGCCTCTGTTAACAACATCGCAGCTACATTCGCCACCGTCCCAGTTACGTCGTCTTCGTCTTCGTCTTCCTCATCATCTTCCTCAAATCCTCACCAAACAAACTTCTCAATTTCAACGTCTCACAAATCCATCTCCGCCTCTTGTAACCTCCGCAAACCCAATTTCAGGGCCCAATCGTCCCCCCTTCTCAGCCTTTATGGCCCACCCGGCCCACGACCCGATCGGTCCAGCTCGACCAGAACGATCACCAAGCCAACCAAACTCCCATTCTCAGCAGGCGATAAGCTCCCGAATGCATCCCTCTCGTACCTCAGCCGAAACGACGTCGTTAAATCCGTCACTCTCTCCAGCCTCTGCAAGGGAAAGAGAGTCGTTTTGGTGGGCGTAACGGCGCCGTTCTCGCCGGGTTGCACTCGGTTCGTCAAACGAGTTAAATCGGCGAGGGAGAAAACTGCGGAGGTGATCGCCTGCTTCGCGGTCAGCGACGTTTTCGTGATGCGTGCCTGGGGAGAGATCCTGGCCGTTGGTGACAGAGTGATGATGTTGTGCGACGGTCCAGGCGAGCTGACCAGGGCACTTGGCGTCTCTCTCAACGGAGCCGTTAGAGCTTGTCTCGGCTTAGGTGTACGGTCCAGGAGGTTTTGCCTGGCTTCTTTCAACGGCGTGATCACAAACGTTGACTTTGACGAAGAAGAAGAAGAAGACGCCCTCATTTCTTCCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Redoxin

Protein Analysis

244

Amino Acids

25.73

Weight (kDa)

9.64

Isoelectric Point (pI)

54.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Redoxin PF08534 94 - 234 1e-17 Redoxin
AhpC-TSA PF00578 95 - 200 1.2e-07 AhpC/TSA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g39680
prunus_persica Prupe.1G378100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0301191
rosa_laevigata RLG00000011269
rosa_multiflora Rmu_sc0002592.1_g000003
rosa_roxburghii Rroxscaffold_171G00441350 Rroxscaffold_7G00167060
rosa_rugosa Rorug06G0302300
rosa_samantha Rh6AG415600 Rh6BG422500 Rh6CG430100 Rh6DG415400 Rh6DG415500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 333
AccB1I GGYRCC 1 cut(s) 397
AccII CGCG 1 cut(s) 482
AciI CCGC 5 cut(s) 6, 141, 157, 461, 482
AclI AACGTT 1 cut(s) 681
AclWI GGATC 1 cut(s) 514
AcoI YGGCCR 2 cut(s) 3, 525
AcyI GRCGYC 4 cut(s) 330, 398, 588, 711
AfaI GTAC 2 cut(s) 314, 633
AfiI CCNNNNNNNGG 2 cut(s) 171, 364
AgsI TTSAA 2 cut(s) 120, 664
AjnI CCWGG 6 cut(s) 509, 522, 562, 575, 638, 651
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AluBI AGCT 5 cut(s) 29, 237, 292, 571, 614
AluI AGCT 5 cut(s) 29, 237, 292, 571, 614
Alw26I GTCTC 3 cut(s) 129, 595, 623
AlwI GGATC 1 cut(s) 514
AlwNI CAGNNNCTG 1 cut(s) 360
AoxI GGCC 5 cut(s) 3, 174, 205, 214, 525
ApaI GGGCCC 1 cut(s) 178
ApeKI GCWGC 1 cut(s) 26
AspLEI GCGC 1 cut(s) 400
AspS9I GGNCC 7 cut(s) 174, 175, 206, 215, 231, 560, 636
AsuC2I CCSGG 2 cut(s) 213, 411
AsuHPI GGTGA 4 cut(s) 89, 244, 478, 545
AvaII GGWCC 3 cut(s) 231, 560, 636
BaeGI GKGCMC 2 cut(s) 178, 583
BanI GGYRCC 1 cut(s) 397
BanII GRGCYC 1 cut(s) 178
BbsI GAAGAC 4 cut(s) 51, 57, 63, 714
BbvCI CCTCAGC 1 cut(s) 317
BbvI GCAGC 1 cut(s) 38
BccI CCATC 1 cut(s) 143
BceAI ACGGC 5 cut(s) 385, 411, 512, 590, 682
BcgI CGANNNNNNTGC 4 cut(s) 291, 325, 406, 440
BciT130I CCWGG 6 cut(s) 511, 524, 564, 577, 640, 653
BclI TGATCA 1 cut(s) 672
BcnI CCSGG 2 cut(s) 213, 411
BcoDI GTCTC 3 cut(s) 129, 595, 623
BfoI RGCGCY 1 cut(s) 401
BglI GCCNNNNNGGC 2 cut(s) 204, 213
BisI GCNGC 2 cut(s) 6, 27
BlsI GCNGC 2 cut(s) 7, 28
Bme1390I CCNGG 8 cut(s) 213, 411, 511, 524, 564, 577, 640, 653
Bme18I GGWCC 3 cut(s) 231, 560, 636
BmgT120I GGNCC 7 cut(s) 174, 175, 206, 215, 231, 560, 636
BmiI GGNNCC 3 cut(s) 176, 399, 604
BmrFI CCNGG 8 cut(s) 213, 411, 511, 524, 564, 577, 640, 653
BmrI ACTGGG 1 cut(s) 41
BmsI GCATC 2 cut(s) 311, 492
BmuI ACTGGG 1 cut(s) 41
BpiI GAAGAC 4 cut(s) 51, 57, 63, 714
BplI GAGNNNNNCTC 2 cut(s) 603, 635
BpmI CTGGAG 1 cut(s) 337
Bpu10I CCTNAGC 2 cut(s) 317, 625
BpuMI CCSGG 2 cut(s) 213, 411
BsaHI GRCGYC 4 cut(s) 330, 398, 588, 711
BsaJI CCNNGG 2 cut(s) 510, 576
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 364
Bse1I ACTGG 1 cut(s) 47
BseBI CCWGG 6 cut(s) 511, 524, 564, 577, 640, 653
BseDI CCNNGG 2 cut(s) 510, 576
BseGI GGATG 1 cut(s) 302
BseLI CCNNNNNNNGG 2 cut(s) 171, 364
BseMII CTCAG 3 cut(s) 208, 291, 331
BseNI ACTGG 1 cut(s) 47
BseSI GKGCMC 2 cut(s) 178, 583
BseXI GCAGC 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 482
Bsh1285I CGRYCG 1 cut(s) 229
BshFI GGCC 5 cut(s) 5, 176, 207, 216, 527
BshNI GGYRCC 1 cut(s) 397
BsiEI CGRYCG 1 cut(s) 229
BsiSI CCGG 2 cut(s) 213, 410
BslFI GGGAC 2 cut(s) 29, 169
BslI CCNNNNNNNGG 2 cut(s) 171, 364
BsmAI GTCTC 3 cut(s) 129, 595, 623
BsmBI CGTCTC 2 cut(s) 129, 595
BsmFI GGGAC 2 cut(s) 29, 169
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 5 cut(s) 5, 176, 207, 216, 527
Bsp120I GGGCCC 1 cut(s) 174
Bsp1286I GDGCHC 2 cut(s) 178, 583
Bsp143I GATC 5 cut(s) 226, 249, 468, 519, 672
BspACI CCGC 5 cut(s) 6, 141, 157, 461, 482
BspANI GGCC 5 cut(s) 5, 176, 207, 216, 527
BspCNI CTCAG 3 cut(s) 207, 290, 330
BspFNI CGCG 1 cut(s) 482
BspLI GGNNCC 3 cut(s) 176, 399, 604
BspPI GGATC 1 cut(s) 514
BspT107I GGYRCC 1 cut(s) 397
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 510, 576
BssMI GATC 5 cut(s) 226, 249, 468, 519, 672
BssNI GRCGYC 4 cut(s) 330, 398, 588, 711
Bst2UI CCWGG 6 cut(s) 511, 524, 564, 577, 640, 653
Bst4CI ACNGT 3 cut(s) 43, 560, 636
BstACI GRCGYC 4 cut(s) 330, 398, 588, 711
BstC8I GCNNGC 4 cut(s) 283, 475, 507, 569
BstDEI CTNAG 4 cut(s) 194, 277, 317, 625
BstENI CCTNNNNNAGG 1 cut(s) 362
BstF5I GGATG 1 cut(s) 302
BstFNI CGCG 1 cut(s) 482
BstH2I RGCGCY 1 cut(s) 401
BstHHI GCGC 1 cut(s) 400
BstKTI GATC 5 cut(s) 229, 252, 471, 522, 675
BstMAI GTCTC 3 cut(s) 129, 595, 623
BstMBI GATC 5 cut(s) 226, 249, 468, 519, 672
BstMCI CGRYCG 1 cut(s) 229
BstMWI GCNNNNNNNGC 6 cut(s) 35, 204, 213, 406, 479, 611
BstNI CCWGG 6 cut(s) 511, 524, 564, 577, 640, 653
BstSCI CCNGG 8 cut(s) 211, 409, 509, 522, 562, 575, 638, 651
BstSLI GKGCMC 2 cut(s) 178, 583
BstUI CGCG 1 cut(s) 482
BstV1I GCAGC 1 cut(s) 38
BstV2I GAAGAC 4 cut(s) 51, 57, 63, 714
BstX2I RGATCY 1 cut(s) 519
BstYI RGATCY 1 cut(s) 519
BsuRI GGCC 5 cut(s) 5, 176, 207, 216, 527
BtgZI GCGATG 1 cut(s) 7
BtsCI GGATG 1 cut(s) 302
Cac8I GCNNGC 4 cut(s) 283, 475, 507, 569
CaiI CAGNNNCTG 1 cut(s) 360
CfoI GCGC 1 cut(s) 400
Cfr13I GGNCC 7 cut(s) 174, 175, 206, 215, 231, 560, 636
CseI GACGC 2 cut(s) 577, 719
Csp6I GTAC 2 cut(s) 313, 632
CviQI GTAC 2 cut(s) 313, 632
DdeI CTNAG 4 cut(s) 194, 277, 317, 625
DinI GGCGCC 1 cut(s) 399
DpnI GATC 5 cut(s) 228, 251, 470, 521, 674
DpnII GATC 5 cut(s) 226, 249, 468, 519, 672
EaeI YGGCCR 2 cut(s) 3, 525
EciI GGCGGA 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 178
Eco47I GGWCC 3 cut(s) 231, 560, 636
EcoNI CCTNNNNNAGG 1 cut(s) 362
EcoO109I RGGNCCY 1 cut(s) 174
EcoRII CCWGG 6 cut(s) 509, 522, 562, 575, 638, 651
EcoT22I ATGCAT 1 cut(s) 304
EcoT38I GRGCYC 1 cut(s) 178
EgeI GGCGCC 1 cut(s) 399
EheI GGCGCC 1 cut(s) 399
Esp3I CGTCTC 2 cut(s) 129, 595
FaiI YATR 1 cut(s) 204
FaqI GGGAC 2 cut(s) 29, 169
FbaI TGATCA 1 cut(s) 672
Fnu4HI GCNGC 2 cut(s) 6, 27
FokI GGATG 1 cut(s) 289
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 2 cut(s) 6, 27
GlaI GCGC 1 cut(s) 399
GluI GCNGC 2 cut(s) 6, 27
GsuI CTGGAG 1 cut(s) 337
HaeII RGCGCY 1 cut(s) 401
HaeIII GGCC 5 cut(s) 5, 176, 207, 216, 527
HapII CCGG 2 cut(s) 213, 410
HgaI GACGC 2 cut(s) 577, 719
HhaI GCGC 1 cut(s) 400
Hin1I GRCGYC 4 cut(s) 330, 398, 588, 711
Hin6I GCGC 1 cut(s) 398
HinP1I GCGC 1 cut(s) 398
HincII GTYRAC 2 cut(s) 16, 685
HindII GTYRAC 2 cut(s) 16, 685
HinfI GANTC 1 cut(s) 375
HpaI GTTAAC 1 cut(s) 16
HpaII CCGG 2 cut(s) 213, 410
HphI GGTGA 4 cut(s) 89, 244, 478, 545
Hpy166II GTNNAC 3 cut(s) 16, 632, 685
Hpy188III TCNNGA 2 cut(s) 295, 499
Hpy8I GTNNAC 3 cut(s) 16, 632, 685
Hpy99I CGWCG 5 cut(s) 58, 332, 335, 494, 560
HpyAV CCTTC 1 cut(s) 200
HpyCH4III ACNGT 3 cut(s) 43, 560, 636
HpyCH4IV ACGT 5 cut(s) 53, 122, 330, 492, 681
HpyCH4V TGCA 3 cut(s) 302, 363, 417
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 204, 213, 406, 479, 611
HpyF3I CTNAG 4 cut(s) 194, 277, 317, 625
HpySE526I ACGT 5 cut(s) 53, 122, 330, 492, 681
Hsp92I GRCGYC 4 cut(s) 330, 398, 588, 711
HspAI GCGC 1 cut(s) 398
KasI GGCGCC 1 cut(s) 397
Ksp22I TGATCA 1 cut(s) 672
KspAI GTTAAC 1 cut(s) 16
Kzo9I GATC 5 cut(s) 226, 249, 468, 519, 672
LmnI GCTCC 2 cut(s) 297, 602
Lsp1109I GCAGC 1 cut(s) 38
LweI GCATC 2 cut(s) 311, 492
MaeII ACGT 5 cut(s) 53, 122, 330, 492, 681
MaeIII GTNAC 5 cut(s) 49, 149, 343, 391, 533
MalI GATC 5 cut(s) 228, 251, 470, 521, 674
MboI GATC 5 cut(s) 226, 249, 468, 519, 672
MflI RGATCY 1 cut(s) 519
MhlI GDGCHC 2 cut(s) 178, 583
MluCI AATT 2 cut(s) 114, 166
Mly113I GGCGCC 1 cut(s) 398
MlyI GAGTC 1 cut(s) 384
Mph1103I ATGCAT 1 cut(s) 304
MseI TTAA 3 cut(s) 15, 336, 438
MspI CCGG 2 cut(s) 213, 410
MspR9I CCNGG 8 cut(s) 213, 411, 511, 524, 564, 577, 640, 653
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 6 cut(s) 511, 524, 564, 577, 640, 653
MvnI CGCG 1 cut(s) 482
MwoI GCNNNNNNNGC 6 cut(s) 35, 204, 213, 406, 479, 611
NarI GGCGCC 1 cut(s) 398
NciI CCSGG 2 cut(s) 213, 411
NdeII GATC 5 cut(s) 226, 249, 468, 519, 672
NlaIV GGNNCC 3 cut(s) 176, 399, 604
NmeAIII GCCGAG 1 cut(s) 600
NmuCI GTSAC 2 cut(s) 343, 533
NsiI ATGCAT 1 cut(s) 304
PcsI WCGNNNNNNNCGW 5 cut(s) 59, 245, 339, 486, 564
PctI GAATGC 1 cut(s) 304
PfoI TCCNGGA 1 cut(s) 638
PkrI GCNGC 2 cut(s) 7, 28
Ple19I CGATCG 1 cut(s) 229
PleI GAGTC 1 cut(s) 383
PluTI GGCGCC 1 cut(s) 401
PpsI GAGTC 1 cut(s) 383
Psp1406I AACGTT 1 cut(s) 681
Psp6I CCWGG 6 cut(s) 509, 522, 562, 575, 638, 651
PspGI CCWGG 6 cut(s) 509, 522, 562, 575, 638, 651
PspN4I GGNNCC 3 cut(s) 176, 399, 604
PspOMI GGGCCC 1 cut(s) 174
PspPI GGNCC 7 cut(s) 174, 175, 206, 215, 231, 560, 636
PstNI CAGNNNCTG 1 cut(s) 360
PsuI RGATCY 1 cut(s) 519
PvuI CGATCG 1 cut(s) 229
RsaI GTAC 2 cut(s) 314, 633
RsaNI GTAC 2 cut(s) 313, 632
SaqAI TTAA 3 cut(s) 15, 336, 438
SatI GCNGC 2 cut(s) 6, 27
Sau3AI GATC 5 cut(s) 226, 249, 468, 519, 672
Sau96I GGNCC 7 cut(s) 174, 175, 206, 215, 231, 560, 636
SchI GAGTC 1 cut(s) 384
ScrFI CCNGG 8 cut(s) 213, 411, 511, 524, 564, 577, 640, 653
SduI GDGCHC 2 cut(s) 178, 583
SfaNI GCATC 2 cut(s) 311, 492
SfiI GGCCNNNNNGGCC 1 cut(s) 213
SfoI GGCGCC 1 cut(s) 399
SinI GGWCC 3 cut(s) 231, 560, 636
Sse9I AATT 2 cut(s) 114, 166
SsiI CCGC 5 cut(s) 6, 141, 157, 461, 482
SspDI GGCGCC 1 cut(s) 397
StyD4I CCNGG 8 cut(s) 211, 409, 509, 522, 562, 575, 638, 651
TaaI ACNGT 3 cut(s) 43, 560, 636
TaiI ACGT 5 cut(s) 56, 125, 333, 495, 684
TaqI TCGA 1 cut(s) 239
TaqII GACCGA 1 cut(s) 219
TasI AATT 2 cut(s) 114, 166
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 3 cut(s) 15, 336, 438
Tru9I TTAA 3 cut(s) 15, 336, 438
TseFI GTSAC 2 cut(s) 343, 533
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 2 cut(s) 343, 533
TspGWI ACGGA 2 cut(s) 331, 615
VpaK11BI GGWCC 3 cut(s) 231, 560, 636
XagI CCTNNNNNAGG 1 cut(s) 362
ZraI GACGTC 1 cut(s) 331
Zsp2I ATGCAT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.