Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0017254

Physical Location & Seq

Genomic Coordinates Forward (+)

59969409 .. 59969639

Gene Structure 231 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG415500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGCGTGCCTGGGGAGAGATCCTGGCCGTTGGTGAGAGAGTGATGATGTTGTGCGACGGTCTAGGAGAGCTGACCAGGGCACTTGGCGTCTCTCTCAACGGAGCCGTTAAAGCTTGTCTCGGCCTAGGTGTACGGTCCAGGAGGTTTTGCCTGGCTTCTTTCAACGGCGTGATCACAAACGTTGACTTTGACGAAGAAGAGGAAGAAGACGCCCTGATTTCTTCCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0030312 GO:0031967 GO:0031975 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Redoxin

Protein Analysis

76

Amino Acids

8.19

Weight (kDa)

4.49

Isoelectric Point (pI)

53.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017254)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39680
prunus_persica	Prupe.1G378100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0301191
rosa_laevigata	RLG00000011269
rosa_multiflora	Rmu_sc0002592.1_g000003
rosa_roxburghii	Rroxscaffold_171G00441350 Rroxscaffold_7G00167060
rosa_rugosa	Rorug06G0302300
rosa_samantha	Rh6AG415600 Rh6BG422500 Rh6CG430100 Rh6DG415400 Rh6DG415500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	180
AclWI	GGATC	1 cut(s)	13
AcoI	YGGCCR	1 cut(s)	24
AcyI	GRCGYC	2 cut(s)	87, 210
AfaI	GTAC	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	163
AjnI	CCWGG	5 cut(s)	8, 21, 74, 137, 150
AluBI	AGCT	2 cut(s)	70, 113
AluI	AGCT	2 cut(s)	70, 113
Alw26I	GTCTC	2 cut(s)	94, 122
AlwI	GGATC	1 cut(s)	13
AoxI	GGCC	2 cut(s)	24, 121
AspA2I	CCTAGG	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	135
AvrII	CCTAGG	1 cut(s)	124
BaeGI	GKGCMC	1 cut(s)	82
BbsI	GAAGAC	1 cut(s)	213
BceAI	ACGGC	3 cut(s)	11, 89, 181
BciT130I	CCWGG	5 cut(s)	10, 23, 76, 139, 152
BclI	TGATCA	1 cut(s)	171
BcoDI	GTCTC	2 cut(s)	94, 122
BfaI	CTAG	2 cut(s)	62, 125
BlnI	CCTAGG	1 cut(s)	124
Bme1390I	CCNGG	5 cut(s)	10, 23, 76, 139, 152
Bme18I	GGWCC	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	5 cut(s)	10, 23, 76, 139, 152
BmrI	ACTGGG	1 cut(s)	220
BmuI	ACTGGG	1 cut(s)	220
BpiI	GAAGAC	1 cut(s)	213
BsaHI	GRCGYC	2 cut(s)	87, 210
BsaJI	CCNNGG	3 cut(s)	9, 75, 124
Bse1I	ACTGG	1 cut(s)	226
BseBI	CCWGG	5 cut(s)	10, 23, 76, 139, 152
BseDI	CCNNGG	3 cut(s)	9, 75, 124
BseNI	ACTGG	1 cut(s)	226
BseSI	GKGCMC	1 cut(s)	82
BshFI	GGCC	2 cut(s)	26, 123
BsmAI	GTCTC	2 cut(s)	94, 122
BsmBI	CGTCTC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	26, 123
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	18, 171
BspANI	GGCC	2 cut(s)	26, 123
BspLI	GGNNCC	1 cut(s)	103
BspPI	GGATC	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	226
BssECI	CCNNGG	3 cut(s)	9, 75, 124
BssMI	GATC	2 cut(s)	18, 171
BssNI	GRCGYC	2 cut(s)	87, 210
BssT1I	CCWWGG	1 cut(s)	124
Bst2UI	CCWGG	5 cut(s)	10, 23, 76, 139, 152
Bst4CI	ACNGT	2 cut(s)	59, 135
Bst6I	CTCTTC	1 cut(s)	192
BstACI	GRCGYC	2 cut(s)	87, 210
BstC8I	GCNNGC	1 cut(s)	6
BstKTI	GATC	2 cut(s)	21, 174
BstMAI	GTCTC	2 cut(s)	94, 122
BstMBI	GATC	2 cut(s)	18, 171
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNI	CCWGG	5 cut(s)	10, 23, 76, 139, 152
BstSCI	CCNGG	5 cut(s)	8, 21, 74, 137, 150
BstSLI	GKGCMC	1 cut(s)	82
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BsuRI	GGCC	2 cut(s)	26, 123
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	135
CseI	GACGC	2 cut(s)	76, 218
Csp6I	GTAC	1 cut(s)	131
CviJI	RGCY	6 cut(s)	26, 70, 104, 113, 123, 155
CviKI_1	RGCY	6 cut(s)	26, 70, 104, 113, 123, 155
CviQI	GTAC	1 cut(s)	131
DpnI	GATC	2 cut(s)	20, 173
DpnII	GATC	2 cut(s)	18, 171
EaeI	YGGCCR	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	135
EcoRII	CCWGG	5 cut(s)	8, 21, 74, 137, 150
EcoT14I	CCWWGG	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	124
Esp3I	CGTCTC	1 cut(s)	94
FbaI	TGATCA	1 cut(s)	171
FspBI	CTAG	2 cut(s)	62, 125
HaeIII	GGCC	2 cut(s)	26, 123
HgaI	GACGC	2 cut(s)	76, 218
Hin1I	GRCGYC	2 cut(s)	87, 210
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	111
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	2 cut(s)	131, 184
Hpy8I	GTNNAC	2 cut(s)	131, 184
Hpy99I	CGWCG	1 cut(s)	59
HpyCH4III	ACNGT	2 cut(s)	59, 135
HpyCH4IV	ACGT	1 cut(s)	180
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpySE526I	ACGT	1 cut(s)	180
Hsp92I	GRCGYC	2 cut(s)	87, 210
Ksp22I	TGATCA	1 cut(s)	171
Kzo9I	GATC	2 cut(s)	18, 171
LmnI	GCTCC	1 cut(s)	101
MaeI	CTAG	2 cut(s)	62, 125
MaeII	ACGT	1 cut(s)	180
MalI	GATC	2 cut(s)	20, 173
MboI	GATC	2 cut(s)	18, 171
MboII	GAAGA	5 cut(s)	206, 209, 213, 215, 218
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	82
MnlI	CCTC	2 cut(s)	135, 193
MseI	TTAA	1 cut(s)	108
MspR9I	CCNGG	5 cut(s)	10, 23, 76, 139, 152
MvaI	CCWGG	5 cut(s)	10, 23, 76, 139, 152
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeII	GATC	2 cut(s)	18, 171
NlaIV	GGNNCC	1 cut(s)	103
NmeAIII	GCCGAG	1 cut(s)	99
PfoI	TCCNGGA	1 cut(s)	137
Psp1406I	AACGTT	1 cut(s)	180
Psp6I	CCWGG	5 cut(s)	8, 21, 74, 137, 150
PspGI	CCWGG	5 cut(s)	8, 21, 74, 137, 150
PspN4I	GGNNCC	1 cut(s)	103
PspPI	GGNCC	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	18
RsaI	GTAC	1 cut(s)	132
RsaNI	GTAC	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	18, 171
Sau96I	GGNCC	1 cut(s)	135
ScrFI	CCNGG	5 cut(s)	10, 23, 76, 139, 152
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	5 cut(s)	72, 115, 130, 146, 183
SinI	GGWCC	1 cut(s)	135
SspMI	CTAG	2 cut(s)	62, 125
StyD4I	CCNGG	5 cut(s)	8, 21, 74, 137, 150
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	2 cut(s)	59, 135
TaiI	ACGT	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TspGWI	ACGGA	1 cut(s)	114
VpaK11BI	GGWCC	1 cut(s)	135
XmaJI	CCTAGG	1 cut(s)	124
XspI	CTAG	2 cut(s)	62, 125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.