Rh6DG415400

Redoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0017254
Physical Location & Seq
Forward (+)
59968918 .. 59969376
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG415400.1

Sequence Viewer

Length: 459 bp
ATGGCCGCCTCTGTTAACAACATCGCAGCAACATTCGCCACCGTCCCAGTTACGTCGTCTTCATCTTCCTCAAATCCTCACCAAACAAACTTCTCAATTTCAATGTCTCACAAAACCATCTCCGCCTCTTGTAACCTCCGCAAACCCAATTTCAGGGCCCAATCGTCCCCCCTTCTCAGCCTTTATGGCCCACCCGGCCCACGACCCGATCGGTCCATCTCGACCAGAACGATCACCAAGCCAACCAAACTCCCATTCTCAGCAGGCGATAAGCTCCCGAATGCATCCCTCTCGTACCTCAACCGAAACGACGTCGTTAAATCCGTCACTCTCTCCAGCCTCTGCAAGGGAAAGAGACTAAGAGAGTCGTTTTGGTGGGCGTATCGGCGCCGTTCTCGCCGGGTTGCACTCGGTTCGTCAAACGAGTTAAATCGGCGAGGGAGAAAACTGCGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Redoxin

Protein Analysis

152

Amino Acids

16.84

Weight (kDa)

11.82

Isoelectric Point (pI)

66.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g39680
prunus_persica Prupe.1G378100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0301191
rosa_laevigata RLG00000011269
rosa_multiflora Rmu_sc0002592.1_g000003
rosa_roxburghii Rroxscaffold_171G00441350 Rroxscaffold_7G00167060
rosa_rugosa Rorug06G0302300
rosa_samantha Rh6AG415600 Rh6BG422500 Rh6CG430100 Rh6DG415400 Rh6DG415500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 315
AccB1I GGYRCC 1 cut(s) 387
AciI CCGC 4 cut(s) 6, 123, 139, 451
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 2 cut(s) 312, 388
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 2 cut(s) 153, 346
AgsI TTSAA 1 cut(s) 102
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AluBI AGCT 1 cut(s) 274
AluI AGCT 1 cut(s) 274
Alw26I GTCTC 2 cut(s) 111, 349
AlwNI CAGNNNCTG 1 cut(s) 342
AoxI GGCC 4 cut(s) 3, 156, 187, 196
ApaI GGGCCC 1 cut(s) 160
ApeKI GCWGC 1 cut(s) 26
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 5 cut(s) 156, 157, 188, 197, 213
AsuC2I CCSGG 2 cut(s) 195, 401
AsuHPI GGTGA 2 cut(s) 71, 226
AvaII GGWCC 1 cut(s) 213
BaeGI GKGCMC 1 cut(s) 160
BanI GGYRCC 1 cut(s) 387
BanII GRGCYC 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 38
BccI CCATC 2 cut(s) 125, 224
BceAI ACGGC 1 cut(s) 375
BcgI CGANNNNNNTGC 4 cut(s) 273, 307, 396, 430
BcnI CCSGG 2 cut(s) 195, 401
BcoDI GTCTC 2 cut(s) 111, 349
BfoI RGCGCY 1 cut(s) 391
BglI GCCNNNNNGGC 2 cut(s) 186, 195
BisI GCNGC 2 cut(s) 6, 27
BlsI GCNGC 2 cut(s) 7, 28
Bme1390I CCNGG 2 cut(s) 195, 401
Bme18I GGWCC 1 cut(s) 213
BmgT120I GGNCC 5 cut(s) 156, 157, 188, 197, 213
BmiI GGNNCC 2 cut(s) 158, 389
BmrFI CCNGG 2 cut(s) 195, 401
BmrI ACTGGG 1 cut(s) 41
BmsI GCATC 1 cut(s) 293
BmuI ACTGGG 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 319
BpuMI CCSGG 2 cut(s) 195, 401
BsaHI GRCGYC 2 cut(s) 312, 388
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 346
Bse1I ACTGG 1 cut(s) 47
BseGI GGATG 1 cut(s) 284
BseLI CCNNNNNNNGG 2 cut(s) 153, 346
BseMII CTCAG 2 cut(s) 190, 273
BseNI ACTGG 1 cut(s) 47
BseSI GKGCMC 1 cut(s) 160
BseXI GCAGC 1 cut(s) 38
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 4 cut(s) 5, 158, 189, 198
BshNI GGYRCC 1 cut(s) 387
BsiEI CGRYCG 1 cut(s) 211
BsiSI CCGG 2 cut(s) 195, 400
BslFI GGGAC 2 cut(s) 29, 151
BslI CCNNNNNNNGG 2 cut(s) 153, 346
BsmAI GTCTC 2 cut(s) 111, 349
BsmFI GGGAC 2 cut(s) 29, 151
BsmI GAATGC 1 cut(s) 286
BsnI GGCC 4 cut(s) 5, 158, 189, 198
Bsp120I GGGCCC 1 cut(s) 156
Bsp1286I GDGCHC 1 cut(s) 160
Bsp143I GATC 2 cut(s) 208, 231
BspACI CCGC 4 cut(s) 6, 123, 139, 451
BspANI GGCC 4 cut(s) 5, 158, 189, 198
BspCNI CTCAG 2 cut(s) 189, 272
BspLI GGNNCC 2 cut(s) 158, 389
BspT107I GGYRCC 1 cut(s) 387
BsrI ACTGG 1 cut(s) 47
BssMI GATC 2 cut(s) 208, 231
BssNI GRCGYC 2 cut(s) 312, 388
Bst4CI ACNGT 1 cut(s) 43
BstACI GRCGYC 2 cut(s) 312, 388
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 3 cut(s) 176, 259, 359
BstENI CCTNNNNNAGG 1 cut(s) 344
BstF5I GGATG 1 cut(s) 284
BstH2I RGCGCY 1 cut(s) 391
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 2 cut(s) 211, 234
BstMAI GTCTC 2 cut(s) 111, 349
BstMBI GATC 2 cut(s) 208, 231
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 4 cut(s) 35, 186, 195, 396
BstSCI CCNGG 2 cut(s) 193, 399
BstSLI GKGCMC 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 38
BstV2I GAAGAC 1 cut(s) 51
BsuRI GGCC 4 cut(s) 5, 158, 189, 198
BtgZI GCGATG 1 cut(s) 7
BtsCI GGATG 1 cut(s) 284
Cac8I GCNNGC 1 cut(s) 265
CaiI CAGNNNCTG 1 cut(s) 342
CfoI GCGC 1 cut(s) 390
Cfr13I GGNCC 5 cut(s) 156, 157, 188, 197, 213
Csp6I GTAC 1 cut(s) 295
CviJI RGCY 8 cut(s) 5, 158, 180, 189, 198, 241, 274, 339
CviKI_1 RGCY 8 cut(s) 5, 158, 180, 189, 198, 241, 274, 339
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 3 cut(s) 176, 259, 359
DinI GGCGCC 1 cut(s) 389
DpnI GATC 2 cut(s) 210, 233
DpnII GATC 2 cut(s) 208, 231
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 213
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 156
EcoT22I ATGCAT 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 160
EgeI GGCGCC 1 cut(s) 389
EheI GGCGCC 1 cut(s) 389
FaiI YATR 1 cut(s) 186
FaqI GGGAC 2 cut(s) 29, 151
Fnu4HI GCNGC 2 cut(s) 6, 27
FokI GGATG 1 cut(s) 271
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 2 cut(s) 6, 27
GlaI GCGC 1 cut(s) 389
GluI GCNGC 2 cut(s) 6, 27
GsuI CTGGAG 1 cut(s) 319
HaeII RGCGCY 1 cut(s) 391
HaeIII GGCC 4 cut(s) 5, 158, 189, 198
HapII CCGG 2 cut(s) 195, 400
HhaI GCGC 1 cut(s) 390
Hin1I GRCGYC 2 cut(s) 312, 388
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 1 cut(s) 365
HpaI GTTAAC 1 cut(s) 16
HpaII CCGG 2 cut(s) 195, 400
HphI GGTGA 2 cut(s) 71, 226
Hpy166II GTNNAC 1 cut(s) 16
Hpy188III TCNNGA 2 cut(s) 220, 277
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 3 cut(s) 58, 314, 317
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 2 cut(s) 53, 312
HpyCH4V TGCA 3 cut(s) 284, 345, 407
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 186, 195, 396
HpyF3I CTNAG 3 cut(s) 176, 259, 359
HpySE526I ACGT 2 cut(s) 53, 312
Hsp92I GRCGYC 2 cut(s) 312, 388
HspAI GCGC 1 cut(s) 388
KasI GGCGCC 1 cut(s) 387
KspAI GTTAAC 1 cut(s) 16
Kzo9I GATC 2 cut(s) 208, 231
LmnI GCTCC 1 cut(s) 279
LpnPI CCDG 7 cut(s) 60, 139, 208, 238, 249, 349, 413
Lsp1109I GCAGC 1 cut(s) 38
LweI GCATC 1 cut(s) 293
MaeII ACGT 2 cut(s) 53, 312
MaeIII GTNAC 3 cut(s) 49, 131, 325
MalI GATC 2 cut(s) 210, 233
MboI GATC 2 cut(s) 208, 231
MboII GAAGA 2 cut(s) 51, 57
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 2 cut(s) 96, 148
Mly113I GGCGCC 1 cut(s) 388
MlyI GAGTC 1 cut(s) 374
Mph1103I ATGCAT 1 cut(s) 286
MseI TTAA 3 cut(s) 15, 318, 428
MspI CCGG 2 cut(s) 195, 400
MspR9I CCNGG 2 cut(s) 195, 401
Mva1269I GAATGC 1 cut(s) 286
MwoI GCNNNNNNNGC 4 cut(s) 35, 186, 195, 396
NarI GGCGCC 1 cut(s) 388
NciI CCSGG 2 cut(s) 195, 401
NdeII GATC 2 cut(s) 208, 231
NlaIV GGNNCC 2 cut(s) 158, 389
NmuCI GTSAC 1 cut(s) 325
NsiI ATGCAT 1 cut(s) 286
PcsI WCGNNNNNNNCGW 2 cut(s) 227, 321
PctI GAATGC 1 cut(s) 286
PkrI GCNGC 2 cut(s) 7, 28
Ple19I CGATCG 1 cut(s) 211
PleI GAGTC 1 cut(s) 373
PluTI GGCGCC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 373
PspN4I GGNNCC 2 cut(s) 158, 389
PspOMI GGGCCC 1 cut(s) 156
PspPI GGNCC 5 cut(s) 156, 157, 188, 197, 213
PstNI CAGNNNCTG 1 cut(s) 342
PvuI CGATCG 1 cut(s) 211
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SaqAI TTAA 3 cut(s) 15, 318, 428
SatI GCNGC 2 cut(s) 6, 27
Sau3AI GATC 2 cut(s) 208, 231
Sau96I GGNCC 5 cut(s) 156, 157, 188, 197, 213
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 2 cut(s) 195, 401
SduI GDGCHC 1 cut(s) 160
SetI ASST 6 cut(s) 56, 138, 276, 300, 315, 458
SfaNI GCATC 1 cut(s) 293
SfiI GGCCNNNNNGGCC 1 cut(s) 195
SfoI GGCGCC 1 cut(s) 389
SinI GGWCC 1 cut(s) 213
Sse9I AATT 2 cut(s) 96, 148
SsiI CCGC 4 cut(s) 6, 123, 139, 451
SspDI GGCGCC 1 cut(s) 387
StyD4I CCNGG 2 cut(s) 193, 399
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 2 cut(s) 56, 315
TaqI TCGA 1 cut(s) 221
TaqII GACCGA 1 cut(s) 201
TasI AATT 2 cut(s) 96, 148
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 3 cut(s) 15, 318, 428
Tru9I TTAA 3 cut(s) 15, 318, 428
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 1 cut(s) 51
TspGWI ACGGA 1 cut(s) 313
VpaK11BI GGWCC 1 cut(s) 213
XagI CCTNNNNNAGG 1 cut(s) 344
ZraI GACGTC 1 cut(s) 313
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.