FvH4_2g41000

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0005705
Physical Location & Seq
Forward (+)
29093731 .. 29102114
8384 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g41000.t2

Sequence Viewer

Length: 2898 bp
ATGGCCTCCATCGACAATGAGCTCGAGGCGCAGCTTCTCGAAGCTGGGAATCAACTCCTCGAATCGCCGTCCACCGTCGACGACCTCCTTCCTCTTCTCGACAGGATCGAAAGCTGTCTATCAAAGGTAGAACAATCACCAAACAAGTCAATGCAAGCCGCACTTGCACCGTCACAGAAGGCATTGGTTACTGAACAACTTTTAAGGCATTCAGATCCTGATGTCAAAGTTTCCGTTGCGTCTTGCATCAGTGAGATAACAAGAATAACTGCGCCAGATGCACCATATGATGATGACCAAATGAAGGAGGTCTTTCAGCTTATCGTGTCTTCATTTGAAAATCTAGACGACCAGTCCAGCCGATCATACACAAAGAGGGCATCCATTCTTGAAACTGTTGCAAAGGTCAGATCCTGTGTGGTAATGTTGGATCTTGAATGCGATGCATTGATCGTTGAGATGTTCCAGCAATTTCTCAAGGCAATAAGGGACTACCACCCAGAGAATGTTTTTTCATCGATGGAGACAATTATGACCCTTGTCATAGAAGAAAGTGAAGATATATCTTCTGAACTTCTTTCTCCTTTGTTAGCTAGTGTGAAAAATGATGATGAGGACGTTCTACCAATTTCTCGAAAGTTGGGAGAAAGAGTAATCGAAAGTTCTGCTATTAAACTTAAGCCCCACTTGGCACACGAAGTAGAAACCCATGGCATTGCATTAGGTGATTACAGTAAAGTGGTAGCTTCTATATGCCAAGAGACAGATGGTGACACTGAGAAGAATGAAGTGCATGATGATGAGGATATGGAGGACAAGTCAACAATCCGGGAATCTTCAGAGGAGGCAGTCCAGGAGGACAAGTCAACAATCCAGGAATCTTCGGATGAGGCAGTTCAGGAAGATAAAGAAAACTCCACCGCGGCAGTTTCTTCTGAACAAGTTGATCCTGAAATTGATGGATCCTCAAAGGTAGTTATGAATAATGGTGGTGCAGCGAATGGGGAAGATGAATCTTCGGCTGATGTGAACTCTTTAAAGAAGCAAGAGCAGGTTGAAGATACCGAGGAAGTAAAAGGTCCAACTACATCAAGTGTTGCTGAACCTGATAGTTTGGAGACTGAGAAGGCTGTTTACGCAAAACAAATGCCAGAAGAAGTTAGTGAGGATAAAGATAATTTGTCAACAGCACAACCTGCAGACAGTCCTCAAGCTGATAATGAGGAAGAAACCGTGGCACTTCCGGGCCATAAAAGTGGCTCTGAAGATGCTCGTGATCCACCTCGTGAGGATCCTGATGTGGAGGGAGCTGTGCCTTCAGAAAGTGAGAAAGGGTCGGATATTAATATCTCCAGTGCATTGGAGAAGGAATCAACTGATGTTGCTCCACCATCCCCAAGTGGGAGCCTTCCTGATGAAAGTCTTCCCAAAAAGGCTGGACGACATAAGAAGAAAGATACTTCTAATAAAGAAGCTACACCTGTTGCTGATGACAAATCCAAAAAGGCAATTGATGGAACAAGTGATTCAGAATTAAAATCAAGTAAGCGCTCTGGGAAAAAGGTCTCTGCTGGGGGTTCTAATGAGAACAAAAGTCCCATTGTGGTGGATGCACCTGTAAAGGAAAGTGGCACCGCTAGTGATTCAGAGGTAAAACAGAAGTCATCTAAGAAGGTTTCTACTGGGAATTCTAAGGAGAATAAAACTTCAGTTGTGGTAGATGAACCTAGAAAGGAAAGTAGCAGCACAACTGATTCAGAGGCAAGACATAAGTCAGCTAAGAAGGTTGATGGAAGCAATAAAACTAGTGATGAGTCTTCTTTGAAGCAGCCAGAAGATAAGAAAACGCGTGCGCGCAGTAAAGGTTCTTCAAGAAGAAGTTCAACAAAACCCTCACCCATGGAAGTGGACAAGGAGATACTGCTGACGCCCAAGTCAAAATCAACCAAGGATGAACTCCCATTAGAGGAGACCCCTAAGACAAATTCCAAGAGGAAGCGTCCTTCGGAAAAAGAAAAGCAATCAGGTGTAAAAGAGTTTGATGAGTCTGAGATTATTGGTTCAAAGATAAAAGTTTGGTGGCCAGCGGATCGAGCGTATTACAAAGGTGTTGTCCATTCATATGAATCTGGTAAAAAGAAGCATGTGGTGAAGTACAATGATGGAGATGAAGAAATTTTAAATCTTAAAAATGAGAAATGGCTGTATGCAGAAAGCGACTCTGAATCAGATGGGGAGCAGGAAGCTGATGAGTCAAGTCACGATGGCTCTTCTGAACAGTCCCTGAAGAAGAAAGTGAGAAATATTCGTGATGGCTCAACTAAGAAAAATACTCAATTTTTTAGGGGTGGAGGAGCTTCCTCCAGCAAATCAAAAGGCAGAAACACCAAGTCTGGTCGTAAACAAAGAGACAGCAGTAAACCTGATGGGCGATCCAAGGCTGTTGGCAAAGCAGATGATGACCGTGGTGGTAAATCAAAGGATCAAACTCCAAAAAGTGGTGGTAAATCCGTGGATGTTGCTCAGAAGGTATCCAGCAAGTCAAAGAACAATGAGTCACAGACACCTAAGAGTGGCAAATCCAAGGAGGATGATAGCAGCACCCCAAGAGCTTCAACCAAGTCCAAGCAAGACACTCAAAAGGCTGGGAAGTCAAATAAAGGCACACCAAAGACTAGCCCCACTACTCCCAAGGGTAAATCCTCTATGAGTAGTAGCAAAGCGAATGGCAAGGTGAAATCTGGTTCAAAGGCAAGAGGCAGCGAGGATATGGAGGAGGATTCTACCGATTCGGAAAAAGAACCAGAAAGGACCAAGGGGAAGTCAACAATTTCATCCAAGGCACAGGGAAGCCAGACCAAGTCTGGTAAAAAGCGAAGGAGAGGAACCAAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

966

Amino Acids

104.57

Weight (kDa)

5.29

Isoelectric Point (pI)

56.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDS5 PF20168 27 - 231 2e-55 Sister chromatid cohesion protein PDS5 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1933
Acc36I ACCTGC 2 cut(s) 1042, 1204
AccB1I GGYRCC 1 cut(s) 1631
AccB7I CCANNNNNTGG 1 cut(s) 2498
AccI GTMKAC 1 cut(s) 78
AccII CGCG 3 cut(s) 923, 1849, 1855
AciI CCGC 5 cut(s) 159, 921, 923, 1635, 2087
AcoI YGGCCR 1 cut(s) 2081
AcsI RAATTY 3 cut(s) 1687, 1984, 2175
AcuI CTGAAG 5 cut(s) 822, 1284, 1302, 1692, 2306
AcyI GRCGYC 1 cut(s) 1928
AdeI CACNNNGTG 1 cut(s) 1286
AfaI GTAC 1 cut(s) 2156
AfeI AGCGCT 1 cut(s) 1550
AfiI CCNNNNNNNGG 5 cut(s) 304, 1401, 1966, 2498, 2573
AflII CTTAAG 1 cut(s) 677
AflIII ACRYGT 1 cut(s) 1847
AhdI GACNNNNNGTC 1 cut(s) 352
AhlI ACTAGT 1 cut(s) 1805
AjnI CCWGG 2 cut(s) 852, 873
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 6 cut(s) 518, 755, 1112, 1570, 1964, 2403
AlwNI CAGNNNCTG 3 cut(s) 218, 414, 2284
Ama87I CYCGRG 1 cut(s) 23
Aor51HI AGCGCT 1 cut(s) 1550
AoxI GGCC 3 cut(s) 3, 1246, 2081
ApeKI GCWGC 6 cut(s) 31, 995, 1743, 1828, 2598, 2760
ApoI RAATTY 3 cut(s) 1687, 1984, 2175
ArsI GACNNNNNNTTYG 2 cut(s) 2097, 2129
AseI ATTAAT 1 cut(s) 1344
Asp700I GAANNNNTTC 2 cut(s) 1422, 1879
AspLEI GCGC 5 cut(s) 31, 274, 1551, 1855, 1857
AspS9I GGNCC 3 cut(s) 1079, 1246, 2811
AsuC2I CCSGG 2 cut(s) 830, 1245
AsuHPI GGTGA 6 cut(s) 129, 737, 782, 1887, 2161, 2746
AvaI CYCGRG 1 cut(s) 23
AvaII GGWCC 2 cut(s) 1079, 2811
BalI TGGCCA 1 cut(s) 2083
BamHI GGATCC 2 cut(s) 962, 1291
BanI GGYRCC 1 cut(s) 1631
BanII GRGCYC 1 cut(s) 24
BarI GAAGNNNNNNTAC 4 cut(s) 1118, 1150, 1852, 1884
BauI CACGAG 2 cut(s) 1272, 1284
BbsI GAAGAC 3 cut(s) 321, 1415, 1809
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 6 cut(s) 43, 1007, 1755, 1840, 2610, 2772
BceAI ACGGC 1 cut(s) 52
BcgI CGANNNNNNTGC 2 cut(s) 647, 681
BciT130I CCWGG 2 cut(s) 854, 875
BciVI GTATCC 1 cut(s) 2542
BcnI CCSGG 2 cut(s) 830, 1245
BcoDI GTCTC 6 cut(s) 518, 755, 1112, 1570, 1964, 2403
BcuI ACTAGT 1 cut(s) 1805
BfaI CTAG 6 cut(s) 344, 594, 1638, 1728, 1806, 2676
BfmI CTRYAG 1 cut(s) 1197
BfoI RGCGCY 1 cut(s) 1552
BfrI CTTAAG 1 cut(s) 677
BfuAI ACCTGC 2 cut(s) 1042, 1204
BfuI GTATCC 1 cut(s) 2542
BisI GCNGC 8 cut(s) 32, 159, 924, 996, 1744, 1829, 2599, 2761
BlsI GCNGC 8 cut(s) 33, 160, 925, 997, 1745, 1830, 2600, 2762
Bme1390I CCNGG 4 cut(s) 830, 854, 875, 1245
Bme18I GGWCC 2 cut(s) 1079, 2811
BmeRI GACNNNNNGTC 1 cut(s) 352
BmeT110I CYCGRG 1 cut(s) 23
BmgT120I GGNCC 3 cut(s) 1079, 1246, 2811
BmiI GGNNCC 5 cut(s) 964, 1293, 1406, 1633, 2887
BmrFI CCNGG 4 cut(s) 830, 854, 875, 1245
BmrI ACTGGG 1 cut(s) 1692
BmsI GCATC 6 cut(s) 255, 268, 389, 433, 1258, 1600
BmuI ACTGGG 1 cut(s) 1692
BoxI GACNNNNGTC 2 cut(s) 539, 1771
BpiI GAAGAC 3 cut(s) 321, 1415, 1809
BpmI CTGGAG 2 cut(s) 1336, 2347
BpuEI CTTGAG 2 cut(s) 461, 1194
BpuMI CCSGG 2 cut(s) 830, 1245
Bsa29I ATCGAT 1 cut(s) 518
BsaHI GRCGYC 1 cut(s) 1928
BsaI GGTCTC 2 cut(s) 1570, 1964
BsaXI ACNNNNNCTCC 6 cut(s) 636, 666, 803, 833, 848, 878
Bsc4I CCNNNNNNNGG 5 cut(s) 304, 1401, 1966, 2498, 2573
Bse1I ACTGG 3 cut(s) 352, 1353, 1687
Bse3DI GCAATG 1 cut(s) 714
BseBI CCWGG 2 cut(s) 854, 875
BseCI ATCGAT 1 cut(s) 518
BseGI GGATG 8 cut(s) 380, 892, 1391, 1615, 1957, 2521, 2596, 2834
BseLI CCNNNNNNNGG 5 cut(s) 304, 1401, 1966, 2498, 2573
BseMI GCAATG 1 cut(s) 714
BseMII CTCAG 4 cut(s) 768, 1113, 2040, 2537
BseNI ACTGG 3 cut(s) 352, 1353, 1687
BsePI GCGCGC 1 cut(s) 1853
BseRI GAGGAG 5 cut(s) 47, 857, 1982, 2367, 2789
BseXI GCAGC 6 cut(s) 43, 1007, 1755, 1840, 2610, 2772
BseYI CCCAGC 3 cut(s) 44, 1571, 2645
BsgI GTGCAG 1 cut(s) 1014
Bsh1236I CGCG 3 cut(s) 923, 1849, 1855
BshFI GGCC 3 cut(s) 5, 1248, 2083
BshNI GGYRCC 1 cut(s) 1631
BshVI ATCGAT 1 cut(s) 518
BsiHKAI GWGCWC 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 2 cut(s) 829, 1244
BslFI GGGAC 3 cut(s) 503, 1581, 2266
BslI CCNNNNNNNGG 5 cut(s) 304, 1401, 1966, 2498, 2573
BsmAI GTCTC 6 cut(s) 518, 755, 1112, 1570, 1964, 2403
BsmFI GGGAC 3 cut(s) 503, 1581, 2266
BsmI GAATGC 2 cut(s) 208, 443
BsnI GGCC 3 cut(s) 5, 1248, 2083
Bso31I GGTCTC 2 cut(s) 1570, 1964
BsoBI CYCGRG 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 24
Bsp19I CCATGG 2 cut(s) 709, 1899
BspACI CCGC 5 cut(s) 159, 921, 923, 1635, 2087
BspANI GGCC 3 cut(s) 5, 1248, 2083
BspCNI CTCAG 4 cut(s) 769, 1114, 2041, 2536
BspDI ATCGAT 1 cut(s) 518
BspFNI CGCG 3 cut(s) 923, 1849, 1855
BspLI GGNNCC 5 cut(s) 964, 1293, 1406, 1633, 2887
BspMAI CTGCAG 1 cut(s) 1201
BspMI ACCTGC 2 cut(s) 1042, 1204
BspQI GCTCTTC 1 cut(s) 2275
BspT107I GGYRCC 1 cut(s) 1631
BspTI CTTAAG 1 cut(s) 677
BspTNI GGTCTC 2 cut(s) 1570, 1964
BsrDI GCAATG 1 cut(s) 714
BsrI ACTGG 3 cut(s) 352, 1353, 1687
BssHII GCGCGC 1 cut(s) 1853
BssNI GRCGYC 1 cut(s) 1928
BssSI CACGAG 2 cut(s) 1272, 1284
BssT1I CCWWGG 8 cut(s) 709, 1899, 1947, 2436, 2583, 2691, 2814, 2838
Bst2BI CACGAG 2 cut(s) 1272, 1284
Bst2UI CCWGG 2 cut(s) 854, 875
Bst4CI ACNGT 8 cut(s) 76, 171, 397, 734, 1205, 1234, 2280, 2465
Bst6I CTCTTC 2 cut(s) 99, 2275
BstACI GRCGYC 1 cut(s) 1928
BstAFI CTTAAG 1 cut(s) 677
BstAPI GCANNNNNTGC 1 cut(s) 1196
BstC8I GCNNGC 4 cut(s) 156, 1851, 1855, 2085
BstDSI CCRYGG 6 cut(s) 709, 921, 1233, 1899, 2464, 2511
BstF5I GGATG 8 cut(s) 380, 892, 1391, 1615, 1957, 2521, 2596, 2834
BstFNI CGCG 3 cut(s) 923, 1849, 1855
BstH2I RGCGCY 1 cut(s) 1552
BstHHI GCGC 5 cut(s) 31, 274, 1551, 1855, 1857
BstMAI GTCTC 6 cut(s) 518, 755, 1112, 1570, 1964, 2403
BstMWI GCNNNNNNNGC 6 cut(s) 28, 164, 278, 1136, 1196, 2093
BstNI CCWGG 2 cut(s) 854, 875
BstNSI RCATGY 1 cut(s) 2147
BstPAI GACNNNNGTC 2 cut(s) 539, 1771
BstSCI CCNGG 4 cut(s) 828, 852, 873, 1243
BstSFI CTRYAG 1 cut(s) 1197
BstUI CGCG 3 cut(s) 923, 1849, 1855
BstV1I GCAGC 6 cut(s) 43, 1007, 1755, 1840, 2610, 2772
BstV2I GAAGAC 3 cut(s) 321, 1415, 1809
BstX2I RGATCY 5 cut(s) 214, 410, 430, 962, 1291
BstXI CCANNNNNNTGG 4 cut(s) 1256, 1360, 1606, 1906
BstYI RGATCY 5 cut(s) 214, 410, 430, 962, 1291
Bsu15I ATCGAT 1 cut(s) 518
BsuI GTATCC 1 cut(s) 2542
BsuRI GGCC 3 cut(s) 5, 1248, 2083
BsuTUI ATCGAT 1 cut(s) 518
BtgI CCRYGG 6 cut(s) 709, 921, 1233, 1899, 2464, 2511
BtgZI GCGATG 1 cut(s) 456
BtsCI GGATG 8 cut(s) 380, 892, 1391, 1615, 1957, 2521, 2596, 2834
BtsIMutI CAGTG 3 cut(s) 256, 774, 1360
BveI ACCTGC 2 cut(s) 1042, 1204
Cac8I GCNNGC 4 cut(s) 156, 1851, 1855, 2085
CaiI CAGNNNCTG 3 cut(s) 218, 414, 2284
CfoI GCGC 5 cut(s) 31, 274, 1551, 1855, 1857
Cfr13I GGNCC 3 cut(s) 1079, 1246, 2811
Cfr42I CCGCGG 1 cut(s) 924
ClaI ATCGAT 1 cut(s) 518
CseI GACGC 3 cut(s) 228, 1936, 1988
Csp6I GTAC 1 cut(s) 2155
CviAII CATG 4 cut(s) 710, 794, 1900, 2144
CviQI GTAC 1 cut(s) 2155
DraI TTTAAA 2 cut(s) 1038, 2181
DraIII CACNNNGTG 1 cut(s) 1286
DrdI GACNNNNNNGTC 1 cut(s) 1933
DriI GACNNNNNGTC 1 cut(s) 352
DseDI GACNNNNNNGTC 1 cut(s) 1933
EaeI YGGCCR 1 cut(s) 2081
Eam1104I CTCTTC 2 cut(s) 99, 2275
Eam1105I GACNNNNNGTC 1 cut(s) 352
EarI CTCTTC 2 cut(s) 99, 2275
Ecl136II GAGCTC 1 cut(s) 22
Eco130I CCWWGG 8 cut(s) 709, 1899, 1947, 2436, 2583, 2691, 2814, 2838
Eco24I GRGCYC 1 cut(s) 24
Eco31I GGTCTC 2 cut(s) 1570, 1964
Eco47I GGWCC 2 cut(s) 1079, 2811
Eco47III AGCGCT 1 cut(s) 1550
Eco53kI GAGCTC 1 cut(s) 22
Eco57I CTGAAG 5 cut(s) 822, 1284, 1302, 1692, 2306
Eco88I CYCGRG 1 cut(s) 23
EcoICRI GAGCTC 1 cut(s) 22
EcoRI GAATTC 1 cut(s) 1687
EcoRII CCWGG 2 cut(s) 852, 873
EcoT14I CCWWGG 8 cut(s) 709, 1899, 1947, 2436, 2583, 2691, 2814, 2838
EcoT22I ATGCAT 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 24
ErhI CCWWGG 8 cut(s) 709, 1899, 1947, 2436, 2583, 2691, 2814, 2838
FaeI CATG 4 cut(s) 713, 797, 1903, 2147
FalI AAGNNNNNCTT 6 cut(s) 147, 179, 296, 328, 671, 703
FaqI GGGAC 3 cut(s) 503, 1581, 2266
FatI CATG 4 cut(s) 709, 793, 1899, 2143
FauNDI CATATG 2 cut(s) 286, 2122
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 8 cut(s) 32, 159, 924, 996, 1744, 1829, 2599, 2761
FokI GGATG 8 cut(s) 367, 899, 1378, 1622, 1964, 2528, 2603, 2821
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 8 cut(s) 32, 159, 924, 996, 1744, 1829, 2599, 2761
FspBI CTAG 6 cut(s) 344, 594, 1638, 1728, 1806, 2676
GlaI GCGC 5 cut(s) 30, 273, 1550, 1854, 1856
GluI GCNGC 8 cut(s) 32, 159, 924, 996, 1744, 1829, 2599, 2761
GsaI CCCAGC 3 cut(s) 48, 1575, 2649
GsuI CTGGAG 2 cut(s) 1336, 2347
HaeII RGCGCY 1 cut(s) 1552
HaeIII GGCC 3 cut(s) 5, 1248, 2083
HapII CCGG 2 cut(s) 829, 1244
HgaI GACGC 3 cut(s) 228, 1936, 1988
HhaI GCGC 5 cut(s) 31, 274, 1551, 1855, 1857
Hin1I GRCGYC 1 cut(s) 1928
Hin1II CATG 4 cut(s) 713, 797, 1903, 2147
Hin6I GCGC 5 cut(s) 29, 272, 1549, 1853, 1855
HinP1I GCGC 5 cut(s) 29, 272, 1549, 1853, 1855
HincII GTYRAC 5 cut(s) 79, 822, 867, 1185, 2826
HindII GTYRAC 5 cut(s) 79, 822, 867, 1185, 2826
HpaII CCGG 2 cut(s) 829, 1244
HphI GGTGA 6 cut(s) 129, 737, 782, 1887, 2161, 2746
Hpy99I CGWCG 2 cut(s) 80, 83
HpyCH4III ACNGT 8 cut(s) 76, 171, 397, 734, 1205, 1234, 2280, 2465
HpyCH4IV ACGT 1 cut(s) 618
HpyF10VI GCNNNNNNNGC 6 cut(s) 28, 164, 278, 1136, 1196, 2093
HpySE526I ACGT 1 cut(s) 618
Hsp92I GRCGYC 1 cut(s) 1928
Hsp92II CATG 4 cut(s) 713, 797, 1903, 2147
HspAI GCGC 5 cut(s) 29, 272, 1549, 1853, 1855
KspI CCGCGG 1 cut(s) 924
LguI GCTCTTC 1 cut(s) 2275
LmnI GCTCC 5 cut(s) 1307, 1390, 1404, 2236, 2354
Lsp1109I GCAGC 6 cut(s) 43, 1007, 1755, 1840, 2610, 2772
LweI GCATC 6 cut(s) 255, 268, 389, 433, 1258, 1600
MaeI CTAG 6 cut(s) 344, 594, 1638, 1728, 1806, 2676
MaeII ACGT 1 cut(s) 618
MaeIII GTNAC 5 cut(s) 171, 187, 770, 2258, 2556
MfeI CAATTG 1 cut(s) 1509
MflI RGATCY 5 cut(s) 214, 410, 430, 962, 1291
MhlI GDGCHC 1 cut(s) 24
MlsI TGGCCA 1 cut(s) 2083
MluI ACGCGT 1 cut(s) 1847
MluNI TGGCCA 1 cut(s) 2083
MlyI GAGTC 5 cut(s) 1823, 2054, 2213, 2261, 2564
MmeI TCCRAC 3 cut(s) 408, 1106, 1317
Mox20I TGGCCA 1 cut(s) 2083
Mph1103I ATGCAT 1 cut(s) 448
MroXI GAANNNNTTC 2 cut(s) 1422, 1879
MscI TGGCCA 1 cut(s) 2083
MseI TTAA 8 cut(s) 203, 672, 678, 1037, 1344, 1535, 2180, 2187
MslI CAYNNNNRTG 5 cut(s) 798, 1254, 1604, 1904, 2121
Msp20I TGGCCA 1 cut(s) 2083
MspA1I CMGCKG 2 cut(s) 923, 2087
MspCI CTTAAG 1 cut(s) 677
MspI CCGG 2 cut(s) 829, 1244
MspR9I CCNGG 4 cut(s) 830, 854, 875, 1245
MunI CAATTG 1 cut(s) 1509
Mva1269I GAATGC 2 cut(s) 208, 443
MvaI CCWGG 2 cut(s) 854, 875
MvnI CGCG 3 cut(s) 923, 1849, 1855
MwoI GCNNNNNNNGC 6 cut(s) 28, 164, 278, 1136, 1196, 2093
NciI CCSGG 2 cut(s) 830, 1245
NcoI CCATGG 2 cut(s) 709, 1899
NdeI CATATG 2 cut(s) 286, 2122
NlaIII CATG 4 cut(s) 713, 797, 1903, 2147
NlaIV GGNNCC 5 cut(s) 964, 1293, 1406, 1633, 2887
NmuCI GTSAC 4 cut(s) 171, 770, 2258, 2556
NsiI ATGCAT 1 cut(s) 448
NspI RCATGY 1 cut(s) 2147
PaeR7I CTCGAG 1 cut(s) 23
PauI GCGCGC 1 cut(s) 1853
PciSI GCTCTTC 1 cut(s) 2275
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PctI GAATGC 2 cut(s) 208, 443
PdmI GAANNNNTTC 2 cut(s) 1422, 1879
PflFI GACNNNGTC 1 cut(s) 2860
PflMI CCANNNNNTGG 1 cut(s) 2498
PfoI TCCNGGA 3 cut(s) 828, 852, 873
PkrI GCNGC 8 cut(s) 33, 160, 925, 997, 1745, 1830, 2600, 2762
PleI GAGTC 5 cut(s) 1822, 2053, 2213, 2260, 2563
PpsI GAGTC 5 cut(s) 1822, 2053, 2213, 2260, 2563
PshAI GACNNNNGTC 2 cut(s) 539, 1771
PshBI ATTAAT 1 cut(s) 1344
Psp124BI GAGCTC 1 cut(s) 24
Psp6I CCWGG 2 cut(s) 852, 873
PspFI CCCAGC 3 cut(s) 44, 1571, 2645
PspGI CCWGG 2 cut(s) 852, 873
PspN4I GGNNCC 5 cut(s) 964, 1293, 1406, 1633, 2887
PspPI GGNCC 3 cut(s) 1079, 1246, 2811
PspXI VCTCGAGB 1 cut(s) 23
PstI CTGCAG 1 cut(s) 1201
PstNI CAGNNNCTG 3 cut(s) 218, 414, 2284
PsuI RGATCY 5 cut(s) 214, 410, 430, 962, 1291
PsyI GACNNNGTC 1 cut(s) 2860
PteI GCGCGC 1 cut(s) 1853
RsaI GTAC 1 cut(s) 2156
RsaNI GTAC 1 cut(s) 2155
RseI CAYNNNNRTG 5 cut(s) 798, 1254, 1604, 1904, 2121
SacI GAGCTC 1 cut(s) 24
SacII CCGCGG 1 cut(s) 924
SalI GTCGAC 1 cut(s) 77
SapI GCTCTTC 1 cut(s) 2275
SaqAI TTAA 8 cut(s) 203, 672, 678, 1037, 1344, 1535, 2180, 2187
SatI GCNGC 8 cut(s) 32, 159, 924, 996, 1744, 1829, 2599, 2761
Sau96I GGNCC 3 cut(s) 1079, 1246, 2811
SchI GAGTC 5 cut(s) 1823, 2054, 2213, 2261, 2564
ScrFI CCNGG 4 cut(s) 830, 854, 875, 1245
SduI GDGCHC 1 cut(s) 24
SfaNI GCATC 6 cut(s) 255, 268, 389, 433, 1258, 1600
SfcI CTRYAG 1 cut(s) 1197
Sfr274I CTCGAG 1 cut(s) 23
Sfr303I CCGCGG 1 cut(s) 924
SgrBI CCGCGG 1 cut(s) 924
SgrDI CGTCGACG 1 cut(s) 77
SinI GGWCC 2 cut(s) 1079, 2811
SlaI CTCGAG 1 cut(s) 23
SmiMI CAYNNNNRTG 5 cut(s) 798, 1254, 1604, 1904, 2121
SmlI CTYRAG 4 cut(s) 23, 476, 677, 1209
SmoI CTYRAG 4 cut(s) 23, 476, 677, 1209
SpeI ACTAGT 1 cut(s) 1805
SsiI CCGC 5 cut(s) 159, 921, 923, 1635, 2087
SspI AATATT 1 cut(s) 2305
SspMI CTAG 6 cut(s) 344, 594, 1638, 1728, 1806, 2676
SstI GAGCTC 1 cut(s) 24
StyD4I CCNGG 4 cut(s) 828, 852, 873, 1243
StyI CCWWGG 8 cut(s) 709, 1899, 1947, 2436, 2583, 2691, 2814, 2838
TaaI ACNGT 8 cut(s) 76, 171, 397, 734, 1205, 1234, 2280, 2465
TaiI ACGT 1 cut(s) 621
TatI WGTACW 1 cut(s) 2154
TauI GCSGC 2 cut(s) 161, 926
Tru1I TTAA 8 cut(s) 203, 672, 678, 1037, 1344, 1535, 2180, 2187
Tru9I TTAA 8 cut(s) 203, 672, 678, 1037, 1344, 1535, 2180, 2187
TscAI CASTG 3 cut(s) 256, 781, 1360
TseFI GTSAC 4 cut(s) 171, 770, 2258, 2556
TseI GCWGC 6 cut(s) 31, 995, 1743, 1828, 2598, 2760
Tsp45I GTSAC 4 cut(s) 171, 770, 2258, 2556
TspGWI ACGGA 2 cut(s) 223, 2500
TspRI CASTG 3 cut(s) 256, 781, 1360
Tth111I GACNNNGTC 1 cut(s) 2860
Van91I CCANNNNNTGG 1 cut(s) 2498
Vha464I CTTAAG 1 cut(s) 677
VpaK11BI GGWCC 2 cut(s) 1079, 2811
VspI ATTAAT 1 cut(s) 1344
XapI RAATTY 3 cut(s) 1687, 1984, 2175
XbaI TCTAGA 1 cut(s) 343
XceI RCATGY 1 cut(s) 2147
XcmI CCANNNNNNNNNTGG 2 cut(s) 764, 2861
XhoI CTCGAG 1 cut(s) 23
XmiI GTMKAC 1 cut(s) 78
XmnI GAANNNNTTC 2 cut(s) 1422, 1879
XspI CTAG 6 cut(s) 344, 594, 1638, 1728, 1806, 2676
Zsp2I ATGCAT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.