Rorug06G0290400

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005705
Physical Location & Seq
Forward (+)
44075826 .. 44076254
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0290400.1

Sequence Viewer

Length: 372 bp
ATGGCGGCATCGAGGAGACTCCGGGACTTGGAATCGCAGCCGGGAAACAAGATCTGCGTGGACTGCTCGCAGAAGAATCCGCAATGGGCTTCGGTCTCCTACGACATCTTCATGTGCCTAGAGTGCTCCGGCAAGCACCGCGGCCTCGGCGTCCACATCTCCTTCGTTAGATCCGTGACCATGGACTCCTGGTCCGAGATCCAGATCAAGAAGATGGAGGCCGGCGGCAACGAGATGCTCAACGCCTTCCTCGCCAGCTACGGCGTCTCTAAGGAGACCGATATCGTCACCCAGTACAACACCAACGCTGCCAGCAGCCCGTCCCCTGGGTTTTCGCTGCGACGGCTCCACGGAGAGCGACGGCGAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.69

Weight (kDa)

9.04

Isoelectric Point (pI)

61.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArfGap PF01412 5 - 94 2.8e-34 Putative GTPase activating protein for Arf
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 141
AciI CCGC 5 cut(s) 5, 80, 139, 141, 225
AclWI GGATC 2 cut(s) 165, 193
AcyI GRCGYC 2 cut(s) 150, 264
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 2 cut(s) 28, 326
AhdI GACNNNNNGTC 1 cut(s) 190
AjnI CCWGG 2 cut(s) 188, 325
AluBI AGCT 1 cut(s) 258
AluI AGCT 1 cut(s) 258
Alw21I GWGCWC 1 cut(s) 128
Alw26I GTCTC 4 cut(s) 10, 100, 269, 271
AlwI GGATC 2 cut(s) 165, 193
AoxI GGCC 2 cut(s) 142, 219
ApeKI GCWGC 4 cut(s) 37, 308, 315, 337
AspS9I GGNCC 1 cut(s) 192
AsuC2I CCSGG 2 cut(s) 23, 42
AsuHPI GGTGA 1 cut(s) 280
AvaII GGWCC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 4 cut(s) 49, 295, 324, 327
BccI CCATC 1 cut(s) 208
BceAI ACGGC 2 cut(s) 277, 359
BciT130I CCWGG 2 cut(s) 190, 327
BcnI CCSGG 2 cut(s) 23, 42
BcoDI GTCTC 4 cut(s) 10, 100, 269, 271
BfaI CTAG 1 cut(s) 119
BglII AGATCT 1 cut(s) 51
BisI GCNGC 7 cut(s) 6, 38, 142, 226, 309, 316, 338
BlsI GCNGC 7 cut(s) 7, 39, 143, 227, 310, 317, 339
Bme1390I CCNGG 4 cut(s) 23, 42, 190, 327
Bme18I GGWCC 1 cut(s) 192
BmeRI GACNNNNNGTC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 347
BmrFI CCNGG 4 cut(s) 23, 42, 190, 327
BmrI ACTGGG 1 cut(s) 286
BmsI GCATC 2 cut(s) 17, 225
BmuI ACTGGG 1 cut(s) 286
BpuMI CCSGG 2 cut(s) 23, 42
BsaBI GATNNNNATC 1 cut(s) 203
BsaHI GRCGYC 2 cut(s) 150, 264
BsaI GGTCTC 2 cut(s) 100, 269
BsaJI CCNNGG 6 cut(s) 139, 145, 180, 325, 326, 349
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 326
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 292
Bse3DI GCAATG 1 cut(s) 89
Bse8I GATNNNNATC 1 cut(s) 203
BseBI CCWGG 2 cut(s) 190, 327
BseDI CCNNGG 6 cut(s) 139, 145, 180, 325, 326, 349
BseJI GATNNNNATC 1 cut(s) 203
BseLI CCNNNNNNNGG 2 cut(s) 28, 326
BseMI GCAATG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 292
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 4 cut(s) 49, 295, 324, 327
Bsh1236I CGCG 1 cut(s) 141
BshFI GGCC 2 cut(s) 144, 221
BsiHKAI GWGCWC 1 cut(s) 128
BsiSI CCGG 4 cut(s) 22, 41, 129, 222
BslFI GGGAC 2 cut(s) 38, 307
BslI CCNNNNNNNGG 2 cut(s) 28, 326
BsmAI GTCTC 4 cut(s) 10, 100, 269, 271
BsmBI CGTCTC 1 cut(s) 271
BsmFI GGGAC 2 cut(s) 38, 307
BsnI GGCC 2 cut(s) 144, 221
Bso31I GGTCTC 2 cut(s) 100, 269
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 4 cut(s) 51, 170, 198, 204
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 5 cut(s) 5, 80, 139, 141, 225
BspANI GGCC 2 cut(s) 144, 221
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 1 cut(s) 347
BspPI GGATC 2 cut(s) 165, 193
BspTNI GGTCTC 2 cut(s) 100, 269
BsrDI GCAATG 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 221
BsrI ACTGG 1 cut(s) 292
BssAI RCCGGY 1 cut(s) 221
BssECI CCNNGG 6 cut(s) 139, 145, 180, 325, 326, 349
BssMI GATC 4 cut(s) 51, 170, 198, 204
BssNI GRCGYC 2 cut(s) 150, 264
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 2 cut(s) 190, 327
BstACI GRCGYC 2 cut(s) 150, 264
BstC8I GCNNGC 5 cut(s) 68, 134, 223, 256, 313
BstDEI CTNAG 1 cut(s) 270
BstDSI CCRYGG 3 cut(s) 139, 180, 349
BstFNI CGCG 1 cut(s) 141
BstKTI GATC 4 cut(s) 54, 173, 201, 207
BstMAI GTCTC 4 cut(s) 10, 100, 269, 271
BstMBI GATC 4 cut(s) 51, 170, 198, 204
BstMWI GCNNNNNNNGC 6 cut(s) 63, 123, 138, 147, 251, 343
BstNI CCWGG 2 cut(s) 190, 327
BstSCI CCNGG 4 cut(s) 21, 40, 188, 325
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 4 cut(s) 49, 295, 324, 327
BstX2I RGATCY 3 cut(s) 51, 170, 198
BstYI RGATCY 3 cut(s) 51, 170, 198
BsuRI GGCC 2 cut(s) 144, 221
BtgI CCRYGG 3 cut(s) 139, 180, 349
Cac8I GCNNGC 5 cut(s) 68, 134, 223, 256, 313
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 192
Cfr42I CCGCGG 1 cut(s) 142
CseI GACGC 2 cut(s) 139, 253
Csp6I GTAC 1 cut(s) 295
CviAII CATG 2 cut(s) 112, 181
CviJI RGCY 7 cut(s) 40, 89, 144, 221, 258, 318, 346
CviKI_1 RGCY 7 cut(s) 40, 89, 144, 221, 258, 318, 346
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 1 cut(s) 270
DpnI GATC 4 cut(s) 53, 172, 200, 206
DpnII GATC 4 cut(s) 51, 170, 198, 204
DriI GACNNNNNGTC 1 cut(s) 190
Eam1105I GACNNNNNGTC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 180
Eco31I GGTCTC 2 cut(s) 100, 269
Eco32I GATATC 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 192
EcoRII CCWGG 2 cut(s) 188, 325
EcoRV GATATC 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 180
Esp3I CGTCTC 1 cut(s) 271
FaeI CATG 2 cut(s) 115, 184
FaiI YATR 2 cut(s) 113, 182
FaqI GGGAC 2 cut(s) 38, 307
FatI CATG 2 cut(s) 111, 180
Fnu4HI GCNGC 7 cut(s) 6, 38, 142, 226, 309, 316, 338
Fsp4HI GCNGC 7 cut(s) 6, 38, 142, 226, 309, 316, 338
FspBI CTAG 1 cut(s) 119
GluI GCNGC 7 cut(s) 6, 38, 142, 226, 309, 316, 338
HaeIII GGCC 2 cut(s) 144, 221
HapII CCGG 4 cut(s) 22, 41, 129, 222
HgaI GACGC 2 cut(s) 139, 253
Hin1I GRCGYC 2 cut(s) 150, 264
Hin1II CATG 2 cut(s) 115, 184
HinfI GANTC 4 cut(s) 18, 32, 76, 185
HpaII CCGG 4 cut(s) 22, 41, 129, 222
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 2 cut(s) 61, 154
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 2 cut(s) 202, 208
Hpy8I GTNNAC 2 cut(s) 61, 154
Hpy99I CGWCG 2 cut(s) 345, 363
HpyAV CCTTC 2 cut(s) 172, 256
HpyF10VI GCNNNNNNNGC 6 cut(s) 63, 123, 138, 147, 251, 343
HpyF3I CTNAG 1 cut(s) 270
Hsp92I GRCGYC 2 cut(s) 150, 264
Hsp92II CATG 2 cut(s) 115, 184
KroI GCCGGC 1 cut(s) 221
KroNI GCCGGC 1 cut(s) 223
KspI CCGCGG 1 cut(s) 142
Kzo9I GATC 4 cut(s) 51, 170, 198, 204
LmnI GCTCC 2 cut(s) 131, 351
Lsp1109I GCAGC 4 cut(s) 49, 295, 324, 327
LweI GCATC 2 cut(s) 17, 225
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 2 cut(s) 175, 286
MalI GATC 4 cut(s) 53, 172, 200, 206
MboI GATC 4 cut(s) 51, 170, 198, 204
MboII GAAGA 3 cut(s) 85, 100, 223
MflI RGATCY 3 cut(s) 51, 170, 198
MhlI GDGCHC 1 cut(s) 128
MlyI GAGTC 2 cut(s) 12, 179
MnlI CCTC 5 cut(s) 6, 155, 211, 260, 359
MroNI GCCGGC 1 cut(s) 221
MslI CAYNNNNRTG 1 cut(s) 110
MspA1I CMGCKG 1 cut(s) 141
MspI CCGG 4 cut(s) 22, 41, 129, 222
MspR9I CCNGG 4 cut(s) 23, 42, 190, 327
MvaI CCWGG 2 cut(s) 190, 327
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 6 cut(s) 63, 123, 138, 147, 251, 343
NaeI GCCGGC 1 cut(s) 223
NciI CCSGG 2 cut(s) 23, 42
NcoI CCATGG 1 cut(s) 180
NdeII GATC 4 cut(s) 51, 170, 198, 204
NgoMIV GCCGGC 1 cut(s) 221
NlaIII CATG 2 cut(s) 115, 184
NlaIV GGNNCC 1 cut(s) 347
NmeAIII GCCGAG 1 cut(s) 126
NmuCI GTSAC 2 cut(s) 175, 286
PasI CCCWGGG 1 cut(s) 326
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PdiI GCCGGC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 32, 76
PfoI TCCNGGA 1 cut(s) 21
PkrI GCNGC 7 cut(s) 7, 39, 143, 227, 310, 317, 339
PleI GAGTC 2 cut(s) 12, 179
PpsI GAGTC 2 cut(s) 12, 179
Psp6I CCWGG 2 cut(s) 188, 325
PspGI CCWGG 2 cut(s) 188, 325
PspN4I GGNNCC 1 cut(s) 347
PspPI GGNCC 1 cut(s) 192
PsuI RGATCY 3 cut(s) 51, 170, 198
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
RseI CAYNNNNRTG 1 cut(s) 110
SacII CCGCGG 1 cut(s) 142
SatI GCNGC 7 cut(s) 6, 38, 142, 226, 309, 316, 338
Sau3AI GATC 4 cut(s) 51, 170, 198, 204
Sau96I GGNCC 1 cut(s) 192
SchI GAGTC 2 cut(s) 12, 179
ScrFI CCNGG 4 cut(s) 23, 42, 190, 327
SduI GDGCHC 1 cut(s) 128
SetI ASST 1 cut(s) 260
SfaNI GCATC 2 cut(s) 17, 225
Sfr303I CCGCGG 1 cut(s) 142
SgrBI CCGCGG 1 cut(s) 142
SinI GGWCC 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 110
SsiI CCGC 5 cut(s) 5, 80, 139, 141, 225
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 4 cut(s) 21, 40, 188, 325
StyI CCWWGG 1 cut(s) 180
TaqI TCGA 1 cut(s) 11
TaqII GACCGA 2 cut(s) 82, 293
TatI WGTACW 1 cut(s) 294
TauI GCSGC 3 cut(s) 8, 144, 228
TfiI GAWTC 2 cut(s) 32, 76
TseFI GTSAC 2 cut(s) 175, 286
TseI GCWGC 4 cut(s) 37, 308, 315, 337
Tsp45I GTSAC 2 cut(s) 175, 286
TspDTI ATGAA 1 cut(s) 100
TspGWI ACGGA 2 cut(s) 163, 366
VpaK11BI GGWCC 1 cut(s) 192
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.