BEST Arabidopsis thaliana protein match is
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G31880 AT4G31880 |
| fragaria_vesca | FvH4_2g41000 FvH4_2g41000 FvH4_2g41000 FvH4_2g41000 FvH4_2g41000 |
| malus_domestica | MD08G1057600.v1.1 MD15G1038500.v1.1 |
| prunus_persica | Prupe.1G392500_v2.0.a1 Prupe.1G392500_v2.0.a1 Prupe.1G392500_v2.0.a1 |
| pyrus_communis | pycom08g04790 pycom15g03610 |
| rosa_chinensis | RchiOBHm_Chr6g0299571 |
| rosa_laevigata | RLG00000011410 |
| rosa_multiflora | Rmu_sc0004064.1_g000019 |
| rosa_roxburghii | Rroxscaffold_7G00168550 |
| rosa_rugosa | Rorug06G0290100 Rorug06G0290200 Rorug06G0290300 Rorug06G0290400 Rorug06G0290500 |
| rosa_samantha | Rh6AG401400 Rh6BG409800 Rh6CG415300 Rh6DG402500 |
| rosa_wichuraiana | Rw6G035120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1149, 1977 |
| AccB1I | GGYRCC | 2 cut(s) | 1613, 1904 |
| AccI | GTMKAC | 1 cut(s) | 1528 |
| AciI | CCGC | 2 cut(s) | 11, 1377 |
| AclWI | GGATC | 9 cut(s) | 209, 438, 905, 1037, 1041, 1321, 1906, 1994, 2373 |
| AcoI | YGGCCR | 2 cut(s) | 1809, 1955 |
| AcsI | RAATTY | 4 cut(s) | 1110, 1162, 1861, 2270 |
| AcuI | CTGAAG | 6 cut(s) | 903, 1161, 1866, 2169, 2180, 2205 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AfaI | GTAC | 5 cut(s) | 654, 2052, 2323, 2458, 2704 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 37, 304, 408, 788, 1452, 2228 |
| AflII | CTTAAG | 2 cut(s) | 476, 677 |
| AjnI | CCWGG | 2 cut(s) | 861, 1839 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 41, 73, 2079, 2111 |
| Alw21I | GWGCWC | 1 cut(s) | 24 |
| Alw26I | GTCTC | 6 cut(s) | 518, 956, 1076, 1208, 1841, 2741 |
| AlwI | GGATC | 9 cut(s) | 209, 438, 905, 1037, 1041, 1321, 1906, 1994, 2373 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 218, 965 |
| AoxI | GGCC | 2 cut(s) | 1809, 1955 |
| ApeKI | GCWGC | 7 cut(s) | 764, 815, 857, 887, 1286, 1460, 2481 |
| ApoI | RAATTY | 4 cut(s) | 1110, 1162, 1861, 2270 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2699, 2731 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1110, 1248 |
| AspS9I | GGNCC | 2 cut(s) | 406, 1374 |
| AsuII | TTCGAA | 1 cut(s) | 2639 |
| AvaII | GGWCC | 2 cut(s) | 406, 1374 |
| BaeGI | GKGCMC | 1 cut(s) | 2549 |
| BalI | TGGCCA | 1 cut(s) | 1957 |
| BanI | GGYRCC | 2 cut(s) | 1613, 1904 |
| BanII | GRGCYC | 1 cut(s) | 24 |
| BauI | CACGAG | 1 cut(s) | 1265 |
| BbsI | GAAGAC | 3 cut(s) | 63, 87, 2417 |
| Bbv12I | GWGCWC | 1 cut(s) | 24 |
| BbvCI | CCTCAGC | 1 cut(s) | 819 |
| BbvI | GCAGC | 7 cut(s) | 776, 802, 844, 899, 1298, 1472, 2493 |
| BccI | CCATC | 6 cut(s) | 1303, 1490, 1655, 1676, 2030, 2203 |
| BceAI | ACGGC | 1 cut(s) | 1824 |
| BciT130I | CCWGG | 2 cut(s) | 863, 1841 |
| BclI | TGATCA | 2 cut(s) | 2041, 2122 |
| BcoDI | GTCTC | 6 cut(s) | 518, 956, 1076, 1208, 1841, 2741 |
| BfaI | CTAG | 1 cut(s) | 1599 |
| BfmI | CTRYAG | 1 cut(s) | 1458 |
| BfrI | CTTAAG | 2 cut(s) | 476, 677 |
| BisI | GCNGC | 7 cut(s) | 765, 816, 858, 888, 1287, 1461, 2482 |
| BlsI | GCNGC | 7 cut(s) | 766, 817, 859, 889, 1288, 1462, 2483 |
| BmcAI | AGTACT | 2 cut(s) | 654, 2052 |
| Bme1390I | CCNGG | 2 cut(s) | 863, 1841 |
| Bme18I | GGWCC | 2 cut(s) | 406, 1374 |
| BmgT120I | GGNCC | 2 cut(s) | 406, 1374 |
| BmiI | GGNNCC | 6 cut(s) | 63, 1272, 1615, 1687, 1906, 2779 |
| BmrFI | CCNGG | 2 cut(s) | 863, 1841 |
| BpiI | GAAGAC | 3 cut(s) | 63, 87, 2417 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1246, 1278 |
| BpmI | CTGGAG | 3 cut(s) | 987, 1862, 2659 |
| Bpu10I | CCTNAGC | 1 cut(s) | 819 |
| Bpu14I | TTCGAA | 1 cut(s) | 2639 |
| BpuEI | CTTGAG | 1 cut(s) | 590 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2040, 2213 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaI | GGTCTC | 1 cut(s) | 2741 |
| BsaJI | CCNNGG | 8 cut(s) | 402, 519, 861, 1824, 1839, 2466, 2571, 2730 |
| BsaWI | WCCGGW | 1 cut(s) | 408 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 37, 304, 408, 788, 1452, 2228 |
| Bse1I | ACTGG | 1 cut(s) | 970 |
| Bse3DI | GCAATG | 1 cut(s) | 714 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2040, 2213 |
| BseBI | CCWGG | 2 cut(s) | 863, 1841 |
| BseDI | CCNNGG | 8 cut(s) | 402, 519, 861, 1824, 1839, 2466, 2571, 2730 |
| BseGI | GGATG | 6 cut(s) | 515, 1597, 1756, 1834, 1930, 2414 |
| BseJI | GATNNNNATC | 2 cut(s) | 2040, 2213 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 37, 304, 408, 788, 1452, 2228 |
| BseMI | GCAATG | 1 cut(s) | 714 |
| BseMII | CTCAG | 8 cut(s) | 810, 978, 1020, 1100, 1203, 1269, 2115, 2676 |
| BseNI | ACTGG | 1 cut(s) | 970 |
| BseRI | GAGGAG | 4 cut(s) | 1028, 1295, 1859, 2123 |
| BseSI | GKGCMC | 1 cut(s) | 2549 |
| BseXI | GCAGC | 7 cut(s) | 776, 802, 844, 899, 1298, 1472, 2493 |
| BseYI | CCCAGC | 3 cut(s) | 30, 44, 2528 |
| BsgI | GTGCAG | 2 cut(s) | 144, 255 |
| BshFI | GGCC | 2 cut(s) | 1811, 1957 |
| BshNI | GGYRCC | 2 cut(s) | 1613, 1904 |
| BsiHKAI | GWGCWC | 1 cut(s) | 24 |
| BsiSI | CCGG | 1 cut(s) | 409 |
| BslFI | GGGAC | 3 cut(s) | 503, 1468, 1513 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 37, 304, 408, 788, 1452, 2228 |
| BsmAI | GTCTC | 6 cut(s) | 518, 956, 1076, 1208, 1841, 2741 |
| BsmBI | CGTCTC | 1 cut(s) | 518 |
| BsmFI | GGGAC | 3 cut(s) | 503, 1468, 1513 |
| BsmI | GAATGC | 1 cut(s) | 208 |
| BsnI | GGCC | 2 cut(s) | 1811, 1957 |
| Bso31I | GGTCTC | 1 cut(s) | 2741 |
| Bsp119I | TTCGAA | 1 cut(s) | 2639 |
| Bsp1286I | GDGCHC | 2 cut(s) | 24, 2549 |
| Bsp19I | CCATGG | 1 cut(s) | 519 |
| BspACI | CCGC | 2 cut(s) | 11, 1377 |
| BspANI | GGCC | 2 cut(s) | 1811, 1957 |
| BspCNI | CTCAG | 8 cut(s) | 811, 979, 1021, 1099, 1204, 1270, 2114, 2677 |
| BspHI | TCATGA | 1 cut(s) | 2134 |
| BspLI | GGNNCC | 6 cut(s) | 63, 1272, 1615, 1687, 1906, 2779 |
| BspMAI | CTGCAG | 1 cut(s) | 1462 |
| BspPI | GGATC | 9 cut(s) | 209, 438, 905, 1037, 1041, 1321, 1906, 1994, 2373 |
| BspT104I | TTCGAA | 1 cut(s) | 2639 |
| BspT107I | GGYRCC | 2 cut(s) | 1613, 1904 |
| BspTI | CTTAAG | 2 cut(s) | 476, 677 |
| BspTNI | GGTCTC | 1 cut(s) | 2741 |
| BsrDI | GCAATG | 1 cut(s) | 714 |
| BsrI | ACTGG | 1 cut(s) | 970 |
| BssECI | CCNNGG | 8 cut(s) | 402, 519, 861, 1824, 1839, 2466, 2571, 2730 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| BssSI | CACGAG | 1 cut(s) | 1265 |
| BssT1I | CCWWGG | 6 cut(s) | 402, 519, 1824, 2466, 2571, 2730 |
| Bst2BI | CACGAG | 1 cut(s) | 1265 |
| Bst2UI | CCWGG | 2 cut(s) | 863, 1841 |
| Bst4CI | ACNGT | 5 cut(s) | 104, 285, 397, 2326, 2654 |
| Bst6I | CTCTTC | 4 cut(s) | 99, 1336, 2156, 2181 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstAFI | CTTAAG | 2 cut(s) | 476, 677 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 188, 278, 1466 |
| BstBI | TTCGAA | 1 cut(s) | 2639 |
| BstC8I | GCNNGC | 1 cut(s) | 1878 |
| BstDSI | CCRYGG | 1 cut(s) | 519 |
| BstF5I | GGATG | 6 cut(s) | 515, 1597, 1756, 1834, 1930, 2414 |
| BstMAI | GTCTC | 6 cut(s) | 518, 956, 1076, 1208, 1841, 2741 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 188, 205, 278, 887, 1100, 1364, 1466, 2189, 2198 |
| BstNI | CCWGG | 2 cut(s) | 863, 1841 |
| BstSCI | CCNGG | 2 cut(s) | 861, 1839 |
| BstSFI | CTRYAG | 1 cut(s) | 1458 |
| BstSLI | GKGCMC | 1 cut(s) | 2549 |
| BstV1I | GCAGC | 7 cut(s) | 776, 802, 844, 899, 1298, 1472, 2493 |
| BstV2I | GAAGAC | 3 cut(s) | 63, 87, 2417 |
| BstX2I | RGATCY | 5 cut(s) | 214, 430, 1042, 1313, 1898 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2617 |
| BstYI | RGATCY | 5 cut(s) | 214, 430, 1042, 1313, 1898 |
| BsuRI | GGCC | 2 cut(s) | 1811, 1957 |
| BtgI | CCRYGG | 1 cut(s) | 519 |
| BtsCI | GGATG | 6 cut(s) | 515, 1597, 1756, 1834, 1930, 2414 |
| BtsIMutI | CAGTG | 3 cut(s) | 109, 256, 2659 |
| Cac8I | GCNNGC | 1 cut(s) | 1878 |
| CaiI | CAGNNNCTG | 2 cut(s) | 218, 965 |
| CciI | TCATGA | 1 cut(s) | 2134 |
| Cfr13I | GGNCC | 2 cut(s) | 406, 1374 |
| CpoI | CGGWCCG | 1 cut(s) | 1374 |
| CseI | GACGC | 1 cut(s) | 1539 |
| Csp6I | GTAC | 5 cut(s) | 653, 2051, 2322, 2457, 2703 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 1569, 1604, 1934, 1969, 2212, 2247 |
| CspI | CGGWCCG | 1 cut(s) | 1374 |
| CviAII | CATG | 4 cut(s) | 414, 520, 688, 2135 |
| CviQI | GTAC | 5 cut(s) | 653, 2051, 2322, 2457, 2703 |
| EaeI | YGGCCR | 2 cut(s) | 1809, 1955 |
| Eam1104I | CTCTTC | 4 cut(s) | 99, 1336, 2156, 2181 |
| EarI | CTCTTC | 4 cut(s) | 99, 1336, 2156, 2181 |
| EciI | GGCGGA | 1 cut(s) | 26 |
| Ecl136II | GAGCTC | 1 cut(s) | 22 |
| Eco130I | CCWWGG | 6 cut(s) | 402, 519, 1824, 2466, 2571, 2730 |
| Eco24I | GRGCYC | 1 cut(s) | 24 |
| Eco31I | GGTCTC | 1 cut(s) | 2741 |
| Eco32I | GATATC | 1 cut(s) | 2215 |
| Eco47I | GGWCC | 2 cut(s) | 406, 1374 |
| Eco53kI | GAGCTC | 1 cut(s) | 22 |
| Eco57I | CTGAAG | 6 cut(s) | 903, 1161, 1866, 2169, 2180, 2205 |
| EcoICRI | GAGCTC | 1 cut(s) | 22 |
| EcoRII | CCWGG | 2 cut(s) | 861, 1839 |
| EcoRV | GATATC | 1 cut(s) | 2215 |
| EcoT14I | CCWWGG | 6 cut(s) | 402, 519, 1824, 2466, 2571, 2730 |
| EcoT22I | ATGCAT | 3 cut(s) | 448, 1054, 1597 |
| EcoT38I | GRGCYC | 1 cut(s) | 24 |
| ErhI | CCWWGG | 6 cut(s) | 402, 519, 1824, 2466, 2571, 2730 |
| Esp3I | CGTCTC | 1 cut(s) | 518 |
| FaeI | CATG | 4 cut(s) | 417, 523, 691, 2138 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 18, 50, 72, 104, 296, 328 |
| FaqI | GGGAC | 3 cut(s) | 503, 1468, 1513 |
| FatI | CATG | 4 cut(s) | 413, 519, 687, 2134 |
| FauNDI | CATATG | 1 cut(s) | 367 |
| FbaI | TGATCA | 2 cut(s) | 2041, 2122 |
| FblI | GTMKAC | 1 cut(s) | 1528 |
| Fnu4HI | GCNGC | 7 cut(s) | 765, 816, 858, 888, 1287, 1461, 2482 |
| FokI | GGATG | 6 cut(s) | 502, 1604, 1763, 1841, 1937, 2401 |
| FriOI | GRGCYC | 1 cut(s) | 24 |
| Fsp4HI | GCNGC | 7 cut(s) | 765, 816, 858, 888, 1287, 1461, 2482 |
| FspBI | CTAG | 1 cut(s) | 1599 |
| GluI | GCNGC | 7 cut(s) | 765, 816, 858, 888, 1287, 1461, 2482 |
| GsaI | CCCAGC | 3 cut(s) | 34, 48, 2532 |
| GsuI | CTGGAG | 3 cut(s) | 987, 1862, 2659 |
| HaeIII | GGCC | 2 cut(s) | 1811, 1957 |
| HapII | CCGG | 1 cut(s) | 409 |
| HgaI | GACGC | 1 cut(s) | 1539 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin1II | CATG | 4 cut(s) | 417, 523, 691, 2138 |
| HincII | GTYRAC | 3 cut(s) | 1158, 1324, 1797 |
| HindII | GTYRAC | 3 cut(s) | 1158, 1324, 1797 |
| HpaI | GTTAAC | 1 cut(s) | 1324 |
| HpaII | CCGG | 1 cut(s) | 409 |
| Hpy166II | GTNNAC | 5 cut(s) | 1158, 1259, 1324, 1529, 1797 |
| Hpy8I | GTNNAC | 5 cut(s) | 1158, 1259, 1324, 1529, 1797 |
| Hpy99I | CGWCG | 3 cut(s) | 10, 80, 2772 |
| HpyCH4III | ACNGT | 5 cut(s) | 104, 285, 397, 2326, 2654 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 188, 205, 278, 887, 1100, 1364, 1466, 2189, 2198 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Hsp92II | CATG | 4 cut(s) | 417, 523, 691, 2138 |
| Ksp22I | TGATCA | 2 cut(s) | 2041, 2122 |
| KspAI | GTTAAC | 1 cut(s) | 1324 |
| LmnI | GCTCC | 6 cut(s) | 19, 1276, 2110, 2234, 2261, 2678 |
| Lsp1109I | GCAGC | 7 cut(s) | 776, 802, 844, 899, 1298, 1472, 2493 |
| MaeI | CTAG | 1 cut(s) | 1599 |
| MaeIII | GTNAC | 4 cut(s) | 171, 1019, 1237, 1735 |
| MfeI | CAATTG | 2 cut(s) | 627, 1581 |
| MflI | RGATCY | 5 cut(s) | 214, 430, 1042, 1313, 1898 |
| MhlI | GDGCHC | 2 cut(s) | 24, 2549 |
| MlsI | TGGCCA | 1 cut(s) | 1957 |
| MluNI | TGGCCA | 1 cut(s) | 1957 |
| MlyI | GAGTC | 5 cut(s) | 529, 971, 998, 1078, 1843 |
| MmeI | TCCRAC | 2 cut(s) | 408, 2308 |
| Mox20I | TGGCCA | 1 cut(s) | 1957 |
| Mph1103I | ATGCAT | 3 cut(s) | 448, 1054, 1597 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1110, 1248 |
| MscI | TGGCCA | 1 cut(s) | 1957 |
| MseI | TTAA | 9 cut(s) | 203, 477, 678, 1001, 1323, 1485, 1517, 2061, 2788 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1233 |
| Msp20I | TGGCCA | 1 cut(s) | 1957 |
| MspA1I | CMGCKG | 2 cut(s) | 767, 1289 |
| MspCI | CTTAAG | 2 cut(s) | 476, 677 |
| MspI | CCGG | 1 cut(s) | 409 |
| MspR9I | CCNGG | 2 cut(s) | 863, 1841 |
| MunI | CAATTG | 2 cut(s) | 627, 1581 |
| Mva1269I | GAATGC | 1 cut(s) | 208 |
| MvaI | CCWGG | 2 cut(s) | 863, 1841 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 188, 205, 278, 887, 1100, 1364, 1466, 2189, 2198 |
| NcoI | CCATGG | 1 cut(s) | 519 |
| NdeI | CATATG | 1 cut(s) | 367 |
| NlaIII | CATG | 4 cut(s) | 417, 523, 691, 2138 |
| NlaIV | GGNNCC | 6 cut(s) | 63, 1272, 1615, 1687, 1906, 2779 |
| NmuCI | GTSAC | 3 cut(s) | 171, 1019, 1237 |
| NsiI | ATGCAT | 3 cut(s) | 448, 1054, 1597 |
| NspV | TTCGAA | 1 cut(s) | 2639 |
| PagI | TCATGA | 1 cut(s) | 2134 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 105 |
| PctI | GAATGC | 1 cut(s) | 208 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1110, 1248 |
| PflFI | GACNNNGTC | 2 cut(s) | 104, 2752 |
| PkrI | GCNGC | 7 cut(s) | 766, 817, 859, 889, 1288, 1462, 2483 |
| PleI | GAGTC | 5 cut(s) | 529, 971, 997, 1078, 1843 |
| PpsI | GAGTC | 5 cut(s) | 529, 971, 997, 1078, 1843 |
| PsiI | TTATAA | 2 cut(s) | 1149, 1977 |
| Psp124BI | GAGCTC | 1 cut(s) | 24 |
| Psp6I | CCWGG | 2 cut(s) | 861, 1839 |
| PspFI | CCCAGC | 3 cut(s) | 30, 44, 2528 |
| PspGI | CCWGG | 2 cut(s) | 861, 1839 |
| PspN4I | GGNNCC | 6 cut(s) | 63, 1272, 1615, 1687, 1906, 2779 |
| PspPI | GGNCC | 2 cut(s) | 406, 1374 |
| PstI | CTGCAG | 1 cut(s) | 1462 |
| PstNI | CAGNNNCTG | 2 cut(s) | 218, 965 |
| PsuI | RGATCY | 5 cut(s) | 214, 430, 1042, 1313, 1898 |
| PsyI | GACNNNGTC | 2 cut(s) | 104, 2752 |
| PvuII | CAGCTG | 2 cut(s) | 767, 1289 |
| RsaI | GTAC | 5 cut(s) | 654, 2052, 2323, 2458, 2704 |
| RsaNI | GTAC | 5 cut(s) | 653, 2051, 2322, 2457, 2703 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1233 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1374 |
| RsrII | CGGWCCG | 1 cut(s) | 1374 |
| SacI | GAGCTC | 1 cut(s) | 24 |
| SaqAI | TTAA | 9 cut(s) | 203, 477, 678, 1001, 1323, 1485, 1517, 2061, 2788 |
| SatI | GCNGC | 7 cut(s) | 765, 816, 858, 888, 1287, 1461, 2482 |
| Sau96I | GGNCC | 2 cut(s) | 406, 1374 |
| ScaI | AGTACT | 2 cut(s) | 654, 2052 |
| SchI | GAGTC | 5 cut(s) | 529, 971, 998, 1078, 1843 |
| ScrFI | CCNGG | 2 cut(s) | 863, 1841 |
| SduI | GDGCHC | 2 cut(s) | 24, 2549 |
| SfcI | CTRYAG | 1 cut(s) | 1458 |
| SfuI | TTCGAA | 1 cut(s) | 2639 |
| SinI | GGWCC | 2 cut(s) | 406, 1374 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1233 |
| SmlI | CTYRAG | 3 cut(s) | 476, 569, 677 |
| SmoI | CTYRAG | 3 cut(s) | 476, 569, 677 |
| SsiI | CCGC | 2 cut(s) | 11, 1377 |
| SspMI | CTAG | 1 cut(s) | 1599 |
| SstI | GAGCTC | 1 cut(s) | 24 |
| StyD4I | CCNGG | 2 cut(s) | 861, 1839 |
| StyI | CCWWGG | 6 cut(s) | 402, 519, 1824, 2466, 2571, 2730 |
| TaaI | ACNGT | 5 cut(s) | 104, 285, 397, 2326, 2654 |
| TaqII | GACCGA | 1 cut(s) | 1362 |
| TatI | WGTACW | 3 cut(s) | 652, 2050, 2702 |
| Tru1I | TTAA | 9 cut(s) | 203, 477, 678, 1001, 1323, 1485, 1517, 2061, 2788 |
| Tru9I | TTAA | 9 cut(s) | 203, 477, 678, 1001, 1323, 1485, 1517, 2061, 2788 |
| TscAI | CASTG | 3 cut(s) | 109, 256, 2659 |
| TseFI | GTSAC | 3 cut(s) | 171, 1019, 1237 |
| TseI | GCWGC | 7 cut(s) | 764, 815, 857, 887, 1286, 1460, 2481 |
| Tsp45I | GTSAC | 3 cut(s) | 171, 1019, 1237 |
| TspDTI | ATGAA | 9 cut(s) | 317, 321, 819, 959, 1142, 1413, 1491, 1755, 1845 |
| TspGWI | ACGGA | 6 cut(s) | 53, 57, 64, 159, 1438, 2785 |
| TspRI | CASTG | 3 cut(s) | 109, 256, 2659 |
| Tth111I | GACNNNGTC | 2 cut(s) | 104, 2752 |
| Vha464I | CTTAAG | 2 cut(s) | 476, 677 |
| VpaK11BI | GGWCC | 2 cut(s) | 406, 1374 |
| XapI | RAATTY | 4 cut(s) | 1110, 1162, 1861, 2270 |
| XbaI | TCTAGA | 1 cut(s) | 1598 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 764 |
| XmiI | GTMKAC | 1 cut(s) | 1528 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1110, 1248 |
| XspI | CTAG | 1 cut(s) | 1599 |
| ZrmI | AGTACT | 2 cut(s) | 654, 2052 |
| Zsp2I | ATGCAT | 3 cut(s) | 448, 1054, 1597 |