Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0005705

Physical Location & Seq

Genomic Coordinates Reverse (-)

3661137 .. 3664509

Gene Structure 3373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g04790.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1746 bp

ATGGTGAACCTGATAGTTTGGAGACTGAGAAAGCTGCTGATGCAGAACAAATTCCAGAAAAAGCTACCAAAGAAGGAGCAGGGAATTCTGATTTGTCAACAAAATCAACACAACCTTCAGAAAATTGTCAAGCTGATAATGAGGAAGATACTGAGACACAGCCAGAACATAAGAGTAAAACTGAAGATGTTCCCAGCTCACCTCATGAGCGATCCTTCTGTGGAGGCAGTTGTGCAATCGGAGAATGAGAAAGTATCTGATATTAACCTCTCTTCAAAGCTATTGGAAAAGGAACCTGCTGGTGTTGCTTCTCCATCCCCAAGTGAGAGCCTTCCTGATGTAAGTCGCTCCAAAAAGGCTGGAAGGAATAAGAAGAAAGATAGTTCTAATAAGGGGGCTGCACCATTTGCAGATGATGAACACCAAAAGGTTACTGATGGAACCAGTGATTCAGAATTAAAACCAAGTATACGCTCTGGGAAACAGGCGTCTGCTGGGGTTTCTAATGAGAATAAAAGTCCAACTGTGGTGGAGACATCTAGAAAGGAAAGTGCCACCACAAGCGATTCAGAGGCAAAACAGAAGTCAGCTAAGAAGGTAGATGGGAGCACTAAAACTAGCGATGGGTCTCCTATAAAGCAAGCAGTAGATAAGAGAAAGCGGGGTCGTGGAAAAGTTACTCCGGCAAAGGCTGCAACAAAATCTTCAGCTAAGGATGATGACAAAGAGATGGTGTCAACACCGAAGTCAGCCCCAAAATTAACTAAGGATGAATCTCCCCTGGAGGAGACCCCTAAGACCAATTCAAAGAGGAAGCGTGCTTCAGGAAAAGAGAAGGAATCTGGTGACAAAGATCATGGTGAGGAGATGGTTGGATCAAAGATTAAAGTTTGGTGGCCAAAAGATCGTACGTTTTATGAAGGTGTTGTCGCATACTTTGATTCTGCTAAAAAGAAGCATAAGGTATCATATACTGATGGTGATGTTGAAACACTAAATCTTAAAAAAGAGAGGTGGGAGTTTGTAGCAGATGACCCTGACTCGGATGAGGAGCAAGGTACTGATCAATTGAGTCATGATGCTTCTTCTGACGTGCCTTTGAAGAAGAAAGTGAAAAAAACTCCTGATGACTCGACTAAGAAGGAAAAGATGGACACTTTGCCCAAATCGGGTGGAGGAGCTTCCTCCAGCAAATCAAAAGGTGCAACAGCTAAATTTGATCGCAAATTGAAAGAAGGCAGTAAAGCTGATAGCAAATCCAAAGGTGGTTCTGGAAAATCAGATGACGAACGTATTGGAAAATTAAAGGATCACACTCCAAAAAGTAGTGGTAAATCGGTTGATGTTGCTCAGAAGACATCCAGTAAATCGAAGAACAATGATACCCATACGCCTAAAAGCACCAAATCCAAGGAAGATGACAGCACCGCACAAAAAGCACAAAAAGCTTCCAAGTCCAAGCAAGACACACAGAAGGCTGGGAAGTCAAATCAGAGCACATTAAAGACTGCCTCCGTTTCCAAGGGTAAATCGTCTGCTAGCAGCGGGAAAGCAAACGCCAACGGTACGGGCAAGGCAAAAGCTGCTTCGAAACCGACTAAAGAAGATGAGGATATGAAGGAAGCCTCAAGTGATTCTGAGAAAGCGCCAGAAAGCACACCAAAGGGGAAGTCCCCAACTTTAGCCAAGGTACTTGCAAGTGAGACCAAGTCTGGTAAGAAGCGGCGAAGAGGAAGCAAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

582

Amino Acids

62.94

Weight (kDa)

9.82

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31880 AT4G31880
fragaria_vesca	FvH4_2g41000 FvH4_2g41000 FvH4_2g41000 FvH4_2g41000 FvH4_2g41000
malus_domestica	MD08G1057600.v1.1 MD15G1038500.v1.1
prunus_persica	Prupe.1G392500_v2.0.a1 Prupe.1G392500_v2.0.a1 Prupe.1G392500_v2.0.a1
pyrus_communis	pycom08g04790 pycom15g03610
rosa_chinensis	RchiOBHm_Chr6g0299571
rosa_laevigata	RLG00000011410
rosa_multiflora	Rmu_sc0004064.1_g000019
rosa_roxburghii	Rroxscaffold_7G00168550
rosa_rugosa	Rorug06G0290100 Rorug06G0290200 Rorug06G0290300 Rorug06G0290400 Rorug06G0290500
rosa_samantha	Rh6AG401400 Rh6BG409800 Rh6CG415300 Rh6DG402500
rosa_wichuraiana	Rw6G035120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	304
AccI	GTMKAC	1 cut(s)	469
AciI	CCGC	4 cut(s)	661, 1428, 1545, 1723
AclWI	GGATC	3 cut(s)	206, 883, 1317
AcoI	YGGCCR	1 cut(s)	896
AcsI	RAATTY	3 cut(s)	50, 84, 1214
AcuI	CTGAAG	4 cut(s)	101, 203, 690, 807
AcyI	GRCGYC	1 cut(s)	488
AfaI	GTAC	4 cut(s)	910, 1060, 1567, 1692
AfiI	CCNNNNNNNGG	2 cut(s)	1042, 1169
AgsI	TTSAA	5 cut(s)	276, 807, 989, 1102, 1231
AjiI	CACGTC	1 cut(s)	1093
AjnI	CCWGG	1 cut(s)	780
Alw21I	GWGCWC	2 cut(s)	611, 1499
Alw26I	GTCTC	6 cut(s)	16, 148, 527, 633, 782, 1697
AlwI	GGATC	3 cut(s)	206, 883, 1317
AoxI	GGCC	1 cut(s)	896
ApeKI	GCWGC	5 cut(s)	34, 398, 692, 1542, 1583
ApoI	RAATTY	3 cut(s)	50, 84, 1214
ArsI	GACNNNNNNTTYG	4 cut(s)	569, 601, 1655, 1687
Asp700I	GAANNNNTTC	2 cut(s)	50, 188
AspLEI	GCGC	1 cut(s)	1648
AsuHPI	GGTGA	5 cut(s)	16, 191, 857, 872, 992
AsuII	TTCGAA	1 cut(s)	1589
AsuNHI	GCTAGC	1 cut(s)	1538
BalI	TGGCCA	1 cut(s)	898
BbsI	GAAGAC	1 cut(s)	1361
Bbv12I	GWGCWC	2 cut(s)	611, 1499
BbvI	GCAGC	5 cut(s)	21, 385, 679, 1554, 1570
BccI	CCATC	8 cut(s)	322, 431, 596, 617, 724, 862, 971, 1144
BciT130I	CCWGG	1 cut(s)	782
BclI	TGATCA	1 cut(s)	1063
BcoDI	GTCTC	6 cut(s)	16, 148, 527, 633, 782, 1697
BfaI	CTAG	3 cut(s)	540, 618, 1539
BfoI	RGCGCY	1 cut(s)	1649
BfuAI	ACCTGC	1 cut(s)	304
BisI	GCNGC	6 cut(s)	35, 399, 693, 1543, 1584, 1724
BlsI	GCNGC	6 cut(s)	36, 400, 694, 1544, 1585, 1725
Bme1390I	CCNGG	1 cut(s)	782
BmgBI	CACGTC	1 cut(s)	1093
BmiI	GGNNCC	2 cut(s)	294, 442
BmrFI	CCNGG	1 cut(s)	782
BmsI	GCATC	2 cut(s)	30, 1069
BmtI	GCTAGC	1 cut(s)	1542
BpiI	GAAGAC	1 cut(s)	1361
BpmI	CTGGAG	2 cut(s)	803, 1171
Bpu10I	CCTNAGC	1 cut(s)	711
Bpu14I	TTCGAA	1 cut(s)	1589
BpuEI	CTTGAG	1 cut(s)	1612
BsaHI	GRCGYC	1 cut(s)	488
BsaI	GGTCTC	3 cut(s)	633, 782, 1697
BsaJI	CCNNGG	4 cut(s)	780, 1410, 1521, 1686
Bsc4I	CCNNNNNNNGG	2 cut(s)	1042, 1169
Bse1I	ACTGG	2 cut(s)	444, 1362
BseBI	CCWGG	1 cut(s)	782
BseDI	CCNNGG	4 cut(s)	780, 1410, 1521, 1686
BseGI	GGATG	5 cut(s)	314, 721, 775, 1051, 1358
BseLI	CCNNNNNNNGG	2 cut(s)	1042, 1169
BseMII	CTCAG	4 cut(s)	17, 143, 1364, 1629
BseNI	ACTGG	2 cut(s)	444, 1362
BseRI	GAGGAG	4 cut(s)	800, 878, 1064, 1191
BseXI	GCAGC	5 cut(s)	21, 385, 679, 1554, 1570
BseYI	CCCAGC	3 cut(s)	193, 494, 1478
BsgI	GTGCAG	1 cut(s)	384
BshFI	GGCC	1 cut(s)	898
BsiHKAI	GWGCWC	2 cut(s)	611, 1499
BsiSI	CCGG	1 cut(s)	683
BsiWI	CGTACG	1 cut(s)	908
BslFI	GGGAC	1 cut(s)	1657
BslI	CCNNNNNNNGG	2 cut(s)	1042, 1169
BsmAI	GTCTC	6 cut(s)	16, 148, 527, 633, 782, 1697
BsmFI	GGGAC	1 cut(s)	1657
BsnI	GGCC	1 cut(s)	898
Bso31I	GGTCTC	3 cut(s)	633, 782, 1697
Bsp119I	TTCGAA	1 cut(s)	1589
Bsp1286I	GDGCHC	2 cut(s)	611, 1499
Bsp143I	GATC	7 cut(s)	211, 853, 875, 904, 1063, 1219, 1309
BspACI	CCGC	4 cut(s)	661, 1428, 1545, 1723
BspANI	GGCC	1 cut(s)	898
BspCNI	CTCAG	4 cut(s)	18, 144, 1363, 1630
BspHI	TCATGA	2 cut(s)	204, 1075
BspLI	GGNNCC	2 cut(s)	294, 442
BspMI	ACCTGC	1 cut(s)	304
BspOI	GCTAGC	1 cut(s)	1542
BspPI	GGATC	3 cut(s)	206, 883, 1317
BspT104I	TTCGAA	1 cut(s)	1589
BspTNI	GGTCTC	3 cut(s)	633, 782, 1697
BsrI	ACTGG	2 cut(s)	444, 1362
BssECI	CCNNGG	4 cut(s)	780, 1410, 1521, 1686
BssMI	GATC	7 cut(s)	211, 853, 875, 904, 1063, 1219, 1309
BssNAI	GTATAC	1 cut(s)	470
BssNI	GRCGYC	1 cut(s)	488
BssT1I	CCWWGG	3 cut(s)	1410, 1521, 1686
Bst1107I	GTATAC	1 cut(s)	470
Bst2UI	CCWGG	1 cut(s)	782
Bst4CI	ACNGT	2 cut(s)	526, 1565
Bst6I	CTCTTC	2 cut(s)	277, 1723
BstACI	GRCGYC	1 cut(s)	488
BstAPI	GCANNNNNTGC	3 cut(s)	407, 692, 1583
BstBI	TTCGAA	1 cut(s)	1589
BstC8I	GCNNGC	3 cut(s)	642, 819, 1540
BstDEI	CTNAG	9 cut(s)	26, 152, 591, 711, 765, 795, 1137, 1350, 1638
BstF5I	GGATG	5 cut(s)	314, 721, 775, 1051, 1358
BstH2I	RGCGCY	1 cut(s)	1649
BstHHI	GCGC	1 cut(s)	1648
BstKTI	GATC	7 cut(s)	214, 856, 878, 907, 1066, 1222, 1312
BstMAI	GTCTC	6 cut(s)	16, 148, 527, 633, 782, 1697
BstMBI	GATC	7 cut(s)	211, 853, 875, 904, 1063, 1219, 1309
BstMWI	GCNNNNNNNGC	7 cut(s)	40, 305, 407, 692, 1436, 1445, 1583
BstNI	CCWGG	1 cut(s)	782
BstSCI	CCNGG	1 cut(s)	780
BstV1I	GCAGC	5 cut(s)	21, 385, 679, 1554, 1570
BstV2I	GAAGAC	1 cut(s)	1361
BstZ17I	GTATAC	1 cut(s)	470
BsuRI	GGCC	1 cut(s)	898
BtgZI	GCGATG	1 cut(s)	636
BtrI	CACGTC	1 cut(s)	1093
BtsCI	GGATG	5 cut(s)	314, 721, 775, 1051, 1358
BtsIMutI	CAGTG	1 cut(s)	451
BveI	ACCTGC	1 cut(s)	304
Cac8I	GCNNGC	3 cut(s)	642, 819, 1540
CciI	TCATGA	2 cut(s)	204, 1075
CfoI	GCGC	1 cut(s)	1648
CseI	GACGC	1 cut(s)	477
Csp6I	GTAC	4 cut(s)	909, 1059, 1566, 1691
CspCI	CAANNNNNGTGG	4 cut(s)	510, 545, 1153, 1188
CviAII	CATG	3 cut(s)	205, 857, 1076
CviQI	GTAC	4 cut(s)	909, 1059, 1566, 1691
DdeI	CTNAG	9 cut(s)	26, 152, 591, 711, 765, 795, 1137, 1350, 1638
DpnI	GATC	7 cut(s)	213, 855, 877, 906, 1065, 1221, 1311
DpnII	GATC	7 cut(s)	211, 853, 875, 904, 1063, 1219, 1309
EaeI	YGGCCR	1 cut(s)	896
Eam1104I	CTCTTC	2 cut(s)	277, 1723
EarI	CTCTTC	2 cut(s)	277, 1723
Eco130I	CCWWGG	3 cut(s)	1410, 1521, 1686
Eco31I	GGTCTC	3 cut(s)	633, 782, 1697
Eco57I	CTGAAG	4 cut(s)	101, 203, 690, 807
EcoRI	GAATTC	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	780
EcoT14I	CCWWGG	3 cut(s)	1410, 1521, 1686
ErhI	CCWWGG	3 cut(s)	1410, 1521, 1686
FaeI	CATG	3 cut(s)	208, 860, 1079
FaqI	GGGAC	1 cut(s)	1657
FatI	CATG	3 cut(s)	204, 856, 1075
FauI	CCCGC	2 cut(s)	654, 1538
FbaI	TGATCA	1 cut(s)	1063
FblI	GTMKAC	1 cut(s)	469
Fnu4HI	GCNGC	6 cut(s)	35, 399, 693, 1543, 1584, 1724
FokI	GGATG	5 cut(s)	301, 728, 782, 1058, 1345
Fsp4HI	GCNGC	6 cut(s)	35, 399, 693, 1543, 1584, 1724
FspBI	CTAG	3 cut(s)	540, 618, 1539
GlaI	GCGC	1 cut(s)	1647
GluI	GCNGC	6 cut(s)	35, 399, 693, 1543, 1584, 1724
GsaI	CCCAGC	3 cut(s)	197, 498, 1482
GsuI	CTGGAG	2 cut(s)	803, 1171
HaeII	RGCGCY	1 cut(s)	1649
HaeIII	GGCC	1 cut(s)	898
HapII	CCGG	1 cut(s)	683
HgaI	GACGC	1 cut(s)	477
HhaI	GCGC	1 cut(s)	1648
Hin1I	GRCGYC	1 cut(s)	488
Hin1II	CATG	3 cut(s)	208, 860, 1079
Hin6I	GCGC	1 cut(s)	1646
HinP1I	GCGC	1 cut(s)	1646
HincII	GTYRAC	2 cut(s)	98, 738
HindII	GTYRAC	2 cut(s)	98, 738
HindIII	AAGCTT	1 cut(s)	1446
HinfI	GANTC	9 cut(s)	449, 566, 773, 839, 941, 1040, 1072, 1130, 1634
HpaII	CCGG	1 cut(s)	683
HphI	GGTGA	5 cut(s)	16, 191, 857, 872, 992
Hpy166II	GTNNAC	4 cut(s)	7, 98, 470, 738
Hpy188III	TCNNGA	8 cut(s)	55, 205, 335, 540, 825, 1076, 1124, 1272
Hpy8I	GTNNAC	4 cut(s)	7, 98, 470, 738
HpyCH4III	ACNGT	2 cut(s)	526, 1565
HpyCH4IV	ACGT	3 cut(s)	911, 1092, 1291
HpyCH4V	TGCA	7 cut(s)	43, 235, 401, 410, 695, 1205, 1697
HpyF10VI	GCNNNNNNNGC	7 cut(s)	40, 305, 407, 692, 1436, 1445, 1583
HpyF3I	CTNAG	9 cut(s)	26, 152, 591, 711, 765, 795, 1137, 1350, 1638
HpySE526I	ACGT	3 cut(s)	911, 1092, 1291
Hsp92I	GRCGYC	1 cut(s)	488
Hsp92II	CATG	3 cut(s)	208, 860, 1079
HspAI	GCGC	1 cut(s)	1646
Ksp22I	TGATCA	1 cut(s)	1063
Kzo9I	GATC	7 cut(s)	211, 853, 875, 904, 1063, 1219, 1309
LmnI	GCTCC	5 cut(s)	76, 353, 606, 1051, 1178
Lsp1109I	GCAGC	5 cut(s)	21, 385, 679, 1554, 1570
LweI	GCATC	2 cut(s)	30, 1069
MaeI	CTAG	3 cut(s)	540, 618, 1539
MaeII	ACGT	3 cut(s)	911, 1092, 1291
MaeIII	GTNAC	3 cut(s)	430, 676, 845
MalI	GATC	7 cut(s)	213, 855, 877, 906, 1065, 1221, 1311
MboI	GATC	7 cut(s)	211, 853, 875, 904, 1063, 1219, 1309
MfeI	CAATTG	1 cut(s)	1067
MhlI	GDGCHC	2 cut(s)	611, 1499
MlsI	TGGCCA	1 cut(s)	898
MluNI	TGGCCA	1 cut(s)	898
MlyI	GAGTC	3 cut(s)	1034, 1081, 1124
MmeI	TCCRAC	2 cut(s)	545, 853
Mox20I	TGGCCA	1 cut(s)	898
MroXI	GAANNNNTTC	2 cut(s)	50, 188
MscI	TGGCCA	1 cut(s)	898
MseI	TTAA	8 cut(s)	264, 458, 761, 885, 1002, 1304, 1502, 1744
Msp20I	TGGCCA	1 cut(s)	898
MspA1I	CMGCKG	1 cut(s)	1545
MspI	CCGG	1 cut(s)	683
MspR9I	CCNGG	1 cut(s)	782
MunI	CAATTG	1 cut(s)	1067
MvaI	CCWGG	1 cut(s)	782
MwoI	GCNNNNNNNGC	7 cut(s)	40, 305, 407, 692, 1436, 1445, 1583
NdeII	GATC	7 cut(s)	211, 853, 875, 904, 1063, 1219, 1309
NheI	GCTAGC	1 cut(s)	1538
NlaIII	CATG	3 cut(s)	208, 860, 1079
NlaIV	GGNNCC	2 cut(s)	294, 442
NmuCI	GTSAC	1 cut(s)	845
NspV	TTCGAA	1 cut(s)	1589
PagI	TCATGA	2 cut(s)	204, 1075
PdmI	GAANNNNTTC	2 cut(s)	50, 188
PfeI	GAWTC	6 cut(s)	449, 566, 773, 839, 941, 1634
Pfl23II	CGTACG	1 cut(s)	908
PflFI	GACNNNGTC	1 cut(s)	1708
PkrI	GCNGC	6 cut(s)	36, 400, 694, 1544, 1585, 1725
PleI	GAGTC	3 cut(s)	1034, 1080, 1124
PpsI	GAGTC	3 cut(s)	1034, 1080, 1124
Psp6I	CCWGG	1 cut(s)	780
PspFI	CCCAGC	3 cut(s)	193, 494, 1478
PspGI	CCWGG	1 cut(s)	780
PspLI	CGTACG	1 cut(s)	908
PspN4I	GGNNCC	2 cut(s)	294, 442
PsyI	GACNNNGTC	1 cut(s)	1708
RsaI	GTAC	4 cut(s)	910, 1060, 1567, 1692
RsaNI	GTAC	4 cut(s)	909, 1059, 1566, 1691
SaqAI	TTAA	8 cut(s)	264, 458, 761, 885, 1002, 1304, 1502, 1744
SatI	GCNGC	6 cut(s)	35, 399, 693, 1543, 1584, 1724
Sau3AI	GATC	7 cut(s)	211, 853, 875, 904, 1063, 1219, 1309
SchI	GAGTC	3 cut(s)	1034, 1081, 1124
ScrFI	CCNGG	1 cut(s)	782
SduI	GDGCHC	2 cut(s)	611, 1499
SfaNI	GCATC	2 cut(s)	30, 1069
SfuI	TTCGAA	1 cut(s)	1589
SmlI	CTYRAG	1 cut(s)	1627
SmoI	CTYRAG	1 cut(s)	1627
SsiI	CCGC	4 cut(s)	661, 1428, 1545, 1723
SspMI	CTAG	3 cut(s)	540, 618, 1539
StyD4I	CCNGG	1 cut(s)	780
StyI	CCWWGG	3 cut(s)	1410, 1521, 1686
TaaI	ACNGT	2 cut(s)	526, 1565
TaiI	ACGT	3 cut(s)	914, 1095, 1294
TaqI	TCGA	3 cut(s)	1133, 1370, 1589
TauI	GCSGC	1 cut(s)	1726
TfiI	GAWTC	6 cut(s)	449, 566, 773, 839, 941, 1634
Tru1I	TTAA	8 cut(s)	264, 458, 761, 885, 1002, 1304, 1502, 1744
Tru9I	TTAA	8 cut(s)	264, 458, 761, 885, 1002, 1304, 1502, 1744
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	1 cut(s)	845
TseI	GCWGC	5 cut(s)	34, 398, 692, 1542, 1583
Tsp45I	GTSAC	1 cut(s)	845
TspDTI	ATGAA	4 cut(s)	432, 786, 933, 1631
TspGWI	ACGGA	1 cut(s)	1504
TspRI	CASTG	1 cut(s)	451
Tth111I	GACNNNGTC	1 cut(s)	1708
XapI	RAATTY	3 cut(s)	50, 84, 1214
XbaI	TCTAGA	1 cut(s)	539
XmiI	GTMKAC	1 cut(s)	469
XmnI	GAANNNNTTC	2 cut(s)	50, 188
XspI	CTAG	3 cut(s)	540, 618, 1539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.