Rorug06G0290500

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005705
Physical Location & Seq
Forward (+)
44081108 .. 44081701
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0290500.1

Sequence Viewer

Length: 594 bp
ATGAGTCAACTCCTCTCCTGGAATTGTCGAGGCTTAGGACGGGTCTTGACAATCCAGAAATTGGGAGAGCTTGTTCGCTCCCACTCTCCGTCCGTGGTCTTCCTCTGTGAGACCAAACAATCAAGTTACAGAGTCAATAATCTTAGGAGGCAGCTAAAGTACTACAAAGGCTATACGGTGGACCCATCTATCAATTCTGCCGGTGGCCTAGCACTGTGGTGGCGGCCGGAGGTCGATGTGGAGGTAATCTCTGCAAGTAAGTACTTAGTTGACACTTTTATCAAGTTCCCTAATCTAAATGCTGAGATACGGGTCTCTTTCTTTTATGGCCCCCCGTACCCGGAGGATAAAGAGATATTCTGGTCTTATGTCTCGAACTTATCTGTCCCTGCCAATATTCCCTGGATTTGCTTGGGAGATTTTAATGAGCTAATATCTGCTGATGAAAAAGAGGGAGGTATCCCTTGGCATTGGAATAGAATCAGATTTCTAAAGGAGTTCATGGATCTGAAGGCTCTCTTTGAGCTTCCTTTCTCTGGGCCCAAATTCACATGGGAGAATATAAGGGAAGAGACTTCGGAGGTCATAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

22.94

Weight (kDa)

6.75

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 5 - 143 1.6e-14 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 61
AciI CCGC 1 cut(s) 223
AclWI GGATC 1 cut(s) 513
AcoI YGGCCR 1 cut(s) 224
AcsI RAATTY 1 cut(s) 545
AcuI CTGAAG 1 cut(s) 530
AfaI GTAC 3 cut(s) 161, 263, 338
AfiI CCNNNNNNNGG 3 cut(s) 61, 340, 536
AjnI CCWGG 2 cut(s) 17, 401
AleI CACNNNNGTG 1 cut(s) 217
AloI GAACNNNNNNTCC 2 cut(s) 57, 89
AluBI AGCT 4 cut(s) 70, 154, 430, 526
AluI AGCT 4 cut(s) 70, 154, 430, 526
Alw26I GTCTC 4 cut(s) 104, 319, 376, 566
AlwI GGATC 1 cut(s) 513
AoxI GGCC 4 cut(s) 205, 224, 328, 539
ApaI GGGCCC 1 cut(s) 543
ApeKI GCWGC 1 cut(s) 151
ApoI RAATTY 1 cut(s) 545
AspS9I GGNCC 4 cut(s) 181, 329, 539, 540
AsuC2I CCSGG 1 cut(s) 341
AvaII GGWCC 1 cut(s) 181
BaeGI GKGCMC 1 cut(s) 543
BanII GRGCYC 1 cut(s) 543
BbsI GAAGAC 1 cut(s) 91
BbvI GCAGC 1 cut(s) 163
BccI CCATC 1 cut(s) 193
BciT130I CCWGG 2 cut(s) 19, 403
BciVI GTATCC 1 cut(s) 470
BcnI CCSGG 1 cut(s) 341
BcoDI GTCTC 4 cut(s) 104, 319, 376, 566
BfaI CTAG 1 cut(s) 209
BfuI GTATCC 1 cut(s) 470
BisI GCNGC 2 cut(s) 152, 224
BlsI GCNGC 2 cut(s) 153, 225
BmcAI AGTACT 2 cut(s) 161, 263
Bme1390I CCNGG 3 cut(s) 19, 341, 403
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 4 cut(s) 181, 329, 539, 540
BmiI GGNNCC 3 cut(s) 183, 331, 541
BmrFI CCNGG 3 cut(s) 19, 341, 403
BpiI GAAGAC 1 cut(s) 91
BplI GAGNNNNNCTC 2 cut(s) 233, 265
Bpu10I CCTNAGC 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 341
BsaI GGTCTC 2 cut(s) 104, 319
BsaJI CCNNGG 3 cut(s) 93, 401, 464
BsaXI ACNNNNNCTCC 2 cut(s) 57, 87
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 340, 536
Bse118I RCCGGY 1 cut(s) 200
BseBI CCWGG 2 cut(s) 19, 403
BseDI CCNNGG 3 cut(s) 93, 401, 464
BseLI CCNNNNNNNGG 3 cut(s) 61, 340, 536
BseMII CTCAG 1 cut(s) 294
BseSI GKGCMC 1 cut(s) 543
BseX3I CGGCCG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 163
Bsh1285I CGRYCG 1 cut(s) 227
BshFI GGCC 4 cut(s) 207, 226, 330, 541
BsiEI CGRYCG 1 cut(s) 227
BsiSI CCGG 3 cut(s) 201, 227, 341
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 3 cut(s) 61, 340, 536
BsmAI GTCTC 4 cut(s) 104, 319, 376, 566
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 4 cut(s) 207, 226, 330, 541
Bso31I GGTCTC 2 cut(s) 104, 319
Bsp120I GGGCCC 1 cut(s) 539
Bsp1286I GDGCHC 1 cut(s) 543
Bsp143I GATC 1 cut(s) 505
BspACI CCGC 1 cut(s) 223
BspANI GGCC 4 cut(s) 207, 226, 330, 541
BspCNI CTCAG 1 cut(s) 295
BspLI GGNNCC 3 cut(s) 183, 331, 541
BspPI GGATC 1 cut(s) 513
BspTNI GGTCTC 2 cut(s) 104, 319
BsrFI RCCGGY 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 3 cut(s) 93, 401, 464
BssMI GATC 1 cut(s) 505
BssT1I CCWWGG 1 cut(s) 464
Bst2UI CCWGG 2 cut(s) 19, 403
Bst4CI ACNGT 2 cut(s) 178, 216
Bst6I CTCTTC 1 cut(s) 564
BstDEI CTNAG 4 cut(s) 34, 143, 265, 303
BstDSI CCRYGG 1 cut(s) 93
BstKTI GATC 1 cut(s) 508
BstMAI GTCTC 4 cut(s) 104, 319, 376, 566
BstMBI GATC 1 cut(s) 505
BstMCI CGRYCG 1 cut(s) 227
BstNI CCWGG 2 cut(s) 19, 403
BstSCI CCNGG 3 cut(s) 17, 339, 401
BstSLI GKGCMC 1 cut(s) 543
BstV1I GCAGC 1 cut(s) 163
BstV2I GAAGAC 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 505
BstYI RGATCY 1 cut(s) 505
BstZI CGGCCG 1 cut(s) 224
BsuI GTATCC 1 cut(s) 470
BsuRI GGCC 4 cut(s) 207, 226, 330, 541
BtgI CCRYGG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 212
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 4 cut(s) 181, 329, 539, 540
Csp6I GTAC 3 cut(s) 160, 262, 337
CviAII CATG 2 cut(s) 502, 552
CviQI GTAC 3 cut(s) 160, 262, 337
DdeI CTNAG 4 cut(s) 34, 143, 265, 303
DpnI GATC 1 cut(s) 507
DpnII GATC 1 cut(s) 505
EaeI YGGCCR 1 cut(s) 224
EagI CGGCCG 1 cut(s) 224
Eam1104I CTCTTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 564
EclXI CGGCCG 1 cut(s) 224
Eco130I CCWWGG 1 cut(s) 464
Eco24I GRGCYC 1 cut(s) 543
Eco31I GGTCTC 2 cut(s) 104, 319
Eco47I GGWCC 1 cut(s) 181
Eco52I CGGCCG 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 530
EcoRII CCWGG 2 cut(s) 17, 401
EcoT14I CCWWGG 1 cut(s) 464
EcoT38I GRGCYC 1 cut(s) 543
ErhI CCWWGG 1 cut(s) 464
FaeI CATG 2 cut(s) 505, 555
FaiI YATR 7 cut(s) 174, 327, 369, 503, 553, 563, 587
FalI AAGNNNNNCTT 2 cut(s) 503, 535
FaqI GGGAC 1 cut(s) 371
FatI CATG 2 cut(s) 501, 551
Fnu4HI GCNGC 2 cut(s) 152, 224
FriOI GRGCYC 1 cut(s) 543
Fsp4HI GCNGC 2 cut(s) 152, 224
FspBI CTAG 1 cut(s) 209
GluI GCNGC 2 cut(s) 152, 224
HaeIII GGCC 4 cut(s) 207, 226, 330, 541
HapII CCGG 3 cut(s) 201, 227, 341
Hin1II CATG 2 cut(s) 505, 555
HincII GTYRAC 2 cut(s) 8, 271
HindII GTYRAC 2 cut(s) 8, 271
HinfI GANTC 3 cut(s) 4, 132, 480
HpaII CCGG 3 cut(s) 201, 227, 341
Hpy166II GTNNAC 3 cut(s) 8, 181, 271
Hpy188I TCNGA 3 cut(s) 485, 510, 580
Hpy188III TCNNGA 3 cut(s) 46, 55, 373
Hpy8I GTNNAC 3 cut(s) 8, 181, 271
HpyAV CCTTC 1 cut(s) 505
HpyCH4III ACNGT 2 cut(s) 178, 216
HpyCH4V TGCA 1 cut(s) 254
HpyF3I CTNAG 4 cut(s) 34, 143, 265, 303
Hsp92II CATG 2 cut(s) 505, 555
Kzo9I GATC 1 cut(s) 505
LmnI GCTCC 1 cut(s) 83
Lsp1109I GCAGC 1 cut(s) 163
MaeI CTAG 1 cut(s) 209
MaeIII GTNAC 1 cut(s) 125
MalI GATC 1 cut(s) 507
MboI GATC 1 cut(s) 505
MboII GAAGA 2 cut(s) 91, 581
MflI RGATCY 1 cut(s) 505
MhlI GDGCHC 1 cut(s) 543
MluCI AATT 4 cut(s) 22, 59, 193, 545
MlyI GAGTC 2 cut(s) 13, 141
MseI TTAA 1 cut(s) 423
MslI CAYNNNNRTG 1 cut(s) 217
MspI CCGG 3 cut(s) 201, 227, 341
MspR9I CCNGG 3 cut(s) 19, 341, 403
MvaI CCWGG 2 cut(s) 19, 403
NciI CCSGG 1 cut(s) 341
NdeII GATC 1 cut(s) 505
NlaIII CATG 2 cut(s) 505, 555
NlaIV GGNNCC 3 cut(s) 183, 331, 541
OliI CACNNNNGTG 1 cut(s) 217
PfeI GAWTC 1 cut(s) 480
PflMI CCANNNNNTGG 1 cut(s) 61
PfoI TCCNGGA 1 cut(s) 17
PkrI GCNGC 2 cut(s) 153, 225
PleI GAGTC 2 cut(s) 12, 140
PpsI GAGTC 2 cut(s) 12, 140
Psp6I CCWGG 2 cut(s) 17, 401
PspGI CCWGG 2 cut(s) 17, 401
PspN4I GGNNCC 3 cut(s) 183, 331, 541
PspOMI GGGCCC 1 cut(s) 539
PspPI GGNCC 4 cut(s) 181, 329, 539, 540
PsuI RGATCY 1 cut(s) 505
RsaI GTAC 3 cut(s) 161, 263, 338
RsaNI GTAC 3 cut(s) 160, 262, 337
RseI CAYNNNNRTG 1 cut(s) 217
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 2 cut(s) 152, 224
Sau3AI GATC 1 cut(s) 505
Sau96I GGNCC 4 cut(s) 181, 329, 539, 540
ScaI AGTACT 2 cut(s) 161, 263
SchI GAGTC 2 cut(s) 13, 141
ScrFI CCNGG 3 cut(s) 19, 341, 403
SduI GDGCHC 1 cut(s) 543
SetI ASST 9 cut(s) 72, 156, 234, 246, 432, 460, 528, 585, 593
SinI GGWCC 1 cut(s) 181
SmiMI CAYNNNNRTG 1 cut(s) 217
Sse9I AATT 4 cut(s) 22, 59, 193, 545
SsiI CCGC 1 cut(s) 223
SspI AATATT 1 cut(s) 397
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 3 cut(s) 17, 339, 401
StyI CCWWGG 1 cut(s) 464
TaaI ACNGT 2 cut(s) 178, 216
TaqI TCGA 3 cut(s) 28, 234, 374
TasI AATT 4 cut(s) 22, 59, 193, 545
TatI WGTACW 2 cut(s) 159, 261
TauI GCSGC 1 cut(s) 226
TfiI GAWTC 1 cut(s) 480
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 1 cut(s) 219
TseI GCWGC 1 cut(s) 151
TspDTI ATGAA 2 cut(s) 459, 490
TspGWI ACGGA 2 cut(s) 78, 82
TspRI CASTG 1 cut(s) 219
Van91I CCANNNNNTGG 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 181
XapI RAATTY 1 cut(s) 545
XspI CTAG 1 cut(s) 209
ZrmI AGTACT 2 cut(s) 161, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.