Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0014682

Physical Location & Seq

Genomic Coordinates Reverse (-)

578113 .. 579454

Gene Structure 1342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g01180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGAGTACTTCTGATGAGCAAAAAAGACCTCATGTCCCGAGATTTGGAGATTGGAACAACAAGGGAGACGATGCACCATACACCGCTGCTTTCGACAAGGCCCGAAAAAGTAAATTGAAAGATGGAGTGAAGATACTAAACCCCAACGATCATCAGGAGAATCCAGAAGCTTGCACCATCGTAGAGAAAGAGAGAGTGAAAGATGAGTTGGTGATGAAGATGAAACTCCCTATTGTTGCTGAAGAGAATCGAAAGTGCTCATCGGAATCTGAAACCATTGCGCTACGACCGTCACATAGTCGTCGTTTGAGTCACCACCGTCGCAAGAGTGATGAATCAGAGCTATCTGTGTGTAGTGAAAAGGTGAGTTTCGAGTGTAACAATTCGTCACTCATATTGCAGCAACGGAGACAACAACGGTTGCGGGAGAGATCTGAGAAAAATAAAAGTATGAATTCATCGTCAAAAAGATTTGGTTCAAGTGTACATCATCGCAAACATTCTAGTATTTCTGATATTGACATGATCCCAATACCAAAATTTGGGGATTGGGATGAGAGCGACCTAAAATCAGGCGAAGATTTTACATACAAATTCAACAAACTGAAAGAAGAAAAGAAGAATATATCTGAAATGTTCTCAGCTGCTTTGTCTTCAGGATCAAACAATGGTGTTAATGCCAGAAATCATGAAAAATCTTTTTCCATATCAAAGATTTGCTGCTTTCATATATTTCCAAGAGGAAGGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

AvrRpt-cleavage

Protein Analysis

251

Amino Acids

28.7

Weight (kDa)

9.31

Isoelectric Point (pI)

60.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AvrRpt-cleavage	PF05627	7 - 38	6.6e-09	Cleavage site for pathogenic type III effector avirulence factor Avr
AvrRpt-cleavage	PF05627	177 - 207	8.9e-12	Cleavage site for pathogenic type III effector avirulence factor Avr

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014682)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g01180 FvH4_7g07170
prunus_persica	Prupe.4G013100_v2.0.a1
pyrus_communis	pycom03g15440 pycom10g27870
rosa_laevigata	RLG00000030967
rosa_multiflora	Rmu_sc0002524.1_g000001 Rmu_ssc0000237.1_g000019 Rmu_ssc0000237.1_g000020
rosa_roxburghii	Rroxscaffold_1G00071200 Rroxscaffold_1G00074570
rosa_rugosa	Rorug04G0392600
rosa_samantha	Rh5AG013800 Rh5BG017200 Rh5CG014800 Rh5DG015300
rosa_wichuraiana	Rw5G001350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	542
AciI	CCGC	2 cut(s)	84, 424
AclWI	GGATC	2 cut(s)	520, 667
AcsI	RAATTY	3 cut(s)	454, 539, 593
AcuI	CTGAAG	2 cut(s)	261, 639
AfaI	GTAC	2 cut(s)	7, 486
AfiI	CCNNNNNNNGG	2 cut(s)	44, 542
AgsI	TTSAA	3 cut(s)	118, 480, 598
AhdI	GACNNNNNGTC	1 cut(s)	32
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AluBI	AGCT	3 cut(s)	170, 343, 644
AluI	AGCT	3 cut(s)	170, 343, 644
Alw21I	GWGCWC	1 cut(s)	260
Alw26I	GTCTC	2 cut(s)	60, 403
AlwI	GGATC	2 cut(s)	520, 667
Ama87I	CYCGRG	1 cut(s)	37
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	4 cut(s)	86, 400, 644, 720
ApoI	RAATTY	3 cut(s)	454, 539, 593
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	3 cut(s)	223, 305, 376
AvaI	CYCGRG	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	645
Bbv12I	GWGCWC	1 cut(s)	260
BbvI	GCAGC	4 cut(s)	73, 412, 631, 707
BccI	CCATC	2 cut(s)	116, 185
BcoDI	GTCTC	2 cut(s)	60, 403
BfaI	CTAG	1 cut(s)	504
BglII	AGATCT	1 cut(s)	431
BisI	GCNGC	4 cut(s)	87, 401, 645, 721
BlsI	GCNGC	4 cut(s)	88, 402, 646, 722
BmcAI	AGTACT	1 cut(s)	7
BmeRI	GACNNNNNGTC	1 cut(s)	32
BmeT110I	CYCGRG	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	100
BmsI	GCATC	1 cut(s)	61
BpiI	GAAGAC	1 cut(s)	645
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 542
Bse3DI	GCAATG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	559
BseLI	CCNNNNNNNGG	2 cut(s)	44, 542
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	426, 654
BseXI	GCAGC	4 cut(s)	73, 412, 631, 707
Bsh1285I	CGRYCG	1 cut(s)	290
BshFI	GGCC	1 cut(s)	101
BsiEI	CGRYCG	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	260
BsiHKCI	CYCGRG	1 cut(s)	37
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	2 cut(s)	44, 542
BsmAI	GTCTC	2 cut(s)	60, 403
BsmBI	CGTCTC	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp1407I	TGTACA	1 cut(s)	484
Bsp143I	GATC	4 cut(s)	148, 431, 525, 659
BspACI	CCGC	2 cut(s)	84, 424
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	2 cut(s)	427, 653
BspHI	TCATGA	1 cut(s)	688
BspPI	GGATC	2 cut(s)	520, 667
BsrDI	GCAATG	1 cut(s)	276
BsrGI	TGTACA	1 cut(s)	484
BssMI	GATC	4 cut(s)	148, 431, 525, 659
Bst4CI	ACNGT	3 cut(s)	291, 320, 420
Bst6I	CTCTTC	1 cut(s)	237
BstAUI	TGTACA	1 cut(s)	484
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	2 cut(s)	435, 640
BstF5I	GGATG	1 cut(s)	559
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	4 cut(s)	151, 434, 528, 662
BstMAI	GTCTC	2 cut(s)	60, 403
BstMBI	GATC	4 cut(s)	148, 431, 525, 659
BstMCI	CGRYCG	1 cut(s)	290
BstV1I	GCAGC	4 cut(s)	73, 412, 631, 707
BstV2I	GAAGAC	1 cut(s)	645
BstX2I	RGATCY	1 cut(s)	431
BstYI	RGATCY	1 cut(s)	431
BsuRI	GGCC	1 cut(s)	101
BtgZI	GCGATG	1 cut(s)	476
BtsCI	GGATG	1 cut(s)	559
Cac8I	GCNNGC	1 cut(s)	172
CciI	TCATGA	1 cut(s)	688
CfoI	GCGC	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	6, 485
CviAII	CATG	3 cut(s)	32, 523, 689
CviJI	RGCY	4 cut(s)	101, 170, 343, 644
CviKI_1	RGCY	4 cut(s)	101, 170, 343, 644
CviQI	GTAC	2 cut(s)	6, 485
DdeI	CTNAG	2 cut(s)	435, 640
DpnI	GATC	4 cut(s)	150, 433, 527, 661
DpnII	GATC	4 cut(s)	148, 431, 525, 659
DriI	GACNNNNNGTC	1 cut(s)	32
Eam1104I	CTCTTC	1 cut(s)	237
Eam1105I	GACNNNNNGTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	237
Eco57I	CTGAAG	2 cut(s)	261, 639
Eco88I	CYCGRG	1 cut(s)	37
EcoRI	GAATTC	1 cut(s)	454
Esp3I	CGTCTC	1 cut(s)	60
FaeI	CATG	3 cut(s)	35, 526, 692
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	3 cut(s)	31, 522, 688
FauI	CCCGC	1 cut(s)	417
Fnu4HI	GCNGC	4 cut(s)	87, 401, 645, 721
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	4 cut(s)	87, 401, 645, 721
FspBI	CTAG	1 cut(s)	504
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	4 cut(s)	87, 401, 645, 721
HaeIII	GGCC	1 cut(s)	101
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	3 cut(s)	35, 526, 692
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HindIII	AAGCTT	1 cut(s)	168
HinfI	GANTC	5 cut(s)	160, 247, 266, 310, 335
HphI	GGTGA	3 cut(s)	223, 305, 376
Hpy166II	GTNNAC	1 cut(s)	485
Hpy188I	TCNGA	7 cut(s)	13, 265, 271, 340, 436, 514, 631
Hpy188III	TCNNGA	5 cut(s)	37, 155, 164, 657, 689
Hpy8I	GTNNAC	1 cut(s)	485
Hpy99I	CGWCG	2 cut(s)	306, 324
HpyAV	CCTTC	1 cut(s)	738
HpyCH4III	ACNGT	3 cut(s)	291, 320, 420
HpyCH4V	TGCA	3 cut(s)	74, 174, 400
HpyF3I	CTNAG	2 cut(s)	435, 640
Hsp92II	CATG	3 cut(s)	35, 526, 692
HspAI	GCGC	1 cut(s)	281
Kzo9I	GATC	4 cut(s)	148, 431, 525, 659
LpnPI	CCDG	5 cut(s)	140, 177, 558, 642, 694
Lsp1109I	GCAGC	4 cut(s)	73, 412, 631, 707
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	1 cut(s)	504
MaeIII	GTNAC	4 cut(s)	291, 311, 377, 387
MalI	GATC	4 cut(s)	150, 433, 527, 661
MboI	GATC	4 cut(s)	148, 431, 525, 659
MboII	GAAGA	7 cut(s)	142, 229, 254, 590, 623, 631, 645
MflI	RGATCY	1 cut(s)	431
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	5 cut(s)	113, 382, 454, 539, 593
MlyI	GAGTC	1 cut(s)	319
MnlI	CCTC	2 cut(s)	39, 734
MseI	TTAA	1 cut(s)	675
MspA1I	CMGCKG	2 cut(s)	86, 644
NdeII	GATC	4 cut(s)	148, 431, 525, 659
NlaIII	CATG	3 cut(s)	35, 526, 692
NmuCI	GTSAC	3 cut(s)	291, 311, 387
PagI	TCATGA	1 cut(s)	688
PfeI	GAWTC	4 cut(s)	160, 247, 266, 335
PflMI	CCANNNNNTGG	1 cut(s)	542
PkrI	GCNGC	4 cut(s)	88, 402, 646, 722
PleI	GAGTC	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	318
PspPI	GGNCC	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	431
PvuII	CAGCTG	1 cut(s)	644
RsaI	GTAC	2 cut(s)	7, 486
RsaNI	GTAC	2 cut(s)	6, 485
SaqAI	TTAA	1 cut(s)	675
SatI	GCNGC	4 cut(s)	87, 401, 645, 721
Sau3AI	GATC	4 cut(s)	148, 431, 525, 659
Sau96I	GGNCC	1 cut(s)	100
ScaI	AGTACT	1 cut(s)	7
SchI	GAGTC	1 cut(s)	319
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	6 cut(s)	31, 172, 345, 366, 567, 646
SfaNI	GCATC	1 cut(s)	61
Sse9I	AATT	5 cut(s)	113, 382, 454, 539, 593
SsiI	CCGC	2 cut(s)	84, 424
SspMI	CTAG	1 cut(s)	504
TaaI	ACNGT	3 cut(s)	291, 320, 420
TaqI	TCGA	3 cut(s)	93, 250, 372
TasI	AATT	5 cut(s)	113, 382, 454, 539, 593
TatI	WGTACW	2 cut(s)	5, 484
TfiI	GAWTC	4 cut(s)	160, 247, 266, 335
Tru1I	TTAA	1 cut(s)	675
Tru9I	TTAA	1 cut(s)	675
TseFI	GTSAC	3 cut(s)	291, 311, 387
TseI	GCWGC	4 cut(s)	86, 400, 644, 720
Tsp45I	GTSAC	3 cut(s)	291, 311, 387
TspDTI	ATGAA	7 cut(s)	230, 236, 348, 447, 467, 705, 716
TspGWI	ACGGA	1 cut(s)	421
Van91I	CCANNNNNTGG	1 cut(s)	542
XapI	RAATTY	3 cut(s)	454, 539, 593
XspI	CTAG	1 cut(s)	504
ZrmI	AGTACT	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.