Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0014682

Physical Location & Seq

Genomic Coordinates Reverse (-)

1098332 .. 1100958

Gene Structure 2627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G001350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCCAAAAGATCTCATGTCCCGAAATTCGGCGATTGGAACAACAAGGGCGGCAATGTACCATACACCGCCGTTTTTGACAAGGCCCGCAAGGGTAAATTGAAAGATGGAGTGAAGATCATGAATCCAAATGATCCGGAGGAAAATCCAGAAGCTTTCACCACCATCGAAGAGAAAGAGAAAGTGAAAGAAGGGGTGGTGAAGATCAAACTCCCTATCGTTGCTGAAGAGAGTCGAGACTCCTCAGAATCTGAATCCATTGCGCCACAGTTGTCATATATTAGTCGTGCTAGTTTGAGTCACCGCCGCCGCAGGAGTGACGAATCGGAGCTATCTGTCTATAGTGAAAAGATGAGTTTCGAGCGTAATAATTCATCACTTATACTGCAGCAACGGAGACAACAACGGTTGCGGGAGAAATCTGAGAAAAAGAAAAGTACAGATTCATCTTCAAAAAGAACTGGTTCAACTGAACATCATCGCAAACATTCTAGTATTACTGATATTGACATGATTCCAATACCAAAATTTGGGGATTGGGATGAGAGCGACCCAAAAGCTGGCGAAGATTATACATACAAATTCAACAAAGTGAAAGATGAAAAGAAGAATATATCTGAAATGTTCTCAGCTGCTTTGTCTTCAGAACCAAACAATGGTGTTAATACCAATAATCATGAAAAATCTTTTTCCATATCAAAGGTATCTTGGTGTTGGTTATCTAGATCTGTAGTTACGCACTTATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

AvrRpt-cleavage

Protein Analysis

249

Amino Acids

28.46

Weight (kDa)

9.21

Isoelectric Point (pI)

64.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AvrRpt-cleavage	PF05627	3 - 33	5.5e-10	Cleavage site for pathogenic type III effector avirulence factor Avr
AvrRpt-cleavage	PF05627	173 - 203	5.8e-13	Cleavage site for pathogenic type III effector avirulence factor Avr

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014682)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g01180 FvH4_7g07170
prunus_persica	Prupe.4G013100_v2.0.a1
pyrus_communis	pycom03g15440 pycom10g27870
rosa_laevigata	RLG00000030967
rosa_multiflora	Rmu_sc0002524.1_g000001 Rmu_ssc0000237.1_g000019 Rmu_ssc0000237.1_g000020
rosa_roxburghii	Rroxscaffold_1G00071200 Rroxscaffold_1G00074570
rosa_rugosa	Rorug04G0392600
rosa_samantha	Rh5AG013800 Rh5BG017200 Rh5CG014800 Rh5DG015300
rosa_wichuraiana	Rw5G001350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	530, 560, 656
AccIII	TCCGGA	1 cut(s)	136
AciI	CCGC	7 cut(s)	51, 69, 88, 304, 307, 310, 412
AclWI	GGATC	1 cut(s)	128
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	26, 527, 581
AcuI	CTGAAG	2 cut(s)	246, 627
AfaI	GTAC	2 cut(s)	60, 439
AfiI	CCNNNNNNNGG	4 cut(s)	29, 530, 560, 656
AgsI	TTSAA	4 cut(s)	103, 453, 468, 586
AluBI	AGCT	4 cut(s)	155, 331, 560, 632
AluI	AGCT	4 cut(s)	155, 331, 560, 632
Alw26I	GTCTC	2 cut(s)	231, 391
AlwI	GGATC	1 cut(s)	128
AlwNI	CAGNNNCTG	1 cut(s)	251
Aor13HI	TCCGGA	1 cut(s)	136
AoxI	GGCC	2 cut(s)	3, 84
ApeKI	GCWGC	2 cut(s)	388, 632
ApoI	RAATTY	3 cut(s)	26, 527, 581
Asp700I	GAANNNNTTC	1 cut(s)	463
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	3 cut(s)	151, 211, 293
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	633
BbvI	GCAGC	2 cut(s)	400, 619
BccI	CCATC	2 cut(s)	101, 173
BceAI	ACGGC	1 cut(s)	56
BcoDI	GTCTC	2 cut(s)	231, 391
BfaI	CTAG	4 cut(s)	291, 492, 723, 748
BfmI	CTRYAG	3 cut(s)	340, 386, 729
BglII	AGATCT	2 cut(s)	11, 725
BisI	GCNGC	5 cut(s)	52, 307, 310, 389, 633
BlsI	GCNGC	5 cut(s)	53, 308, 311, 390, 634
BmgT120I	GGNCC	1 cut(s)	85
BpiI	GAAGAC	1 cut(s)	633
BsaWI	WCCGGW	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 530, 560, 656
Bse1I	ACTGG	1 cut(s)	466
Bse3DI	GCAATG	2 cut(s)	61, 258
BseAI	TCCGGA	1 cut(s)	136
BseGI	GGATG	1 cut(s)	547
BseLI	CCNNNNNNNGG	4 cut(s)	29, 530, 560, 656
BseMI	GCAATG	2 cut(s)	61, 258
BseMII	CTCAG	3 cut(s)	258, 414, 642
BseNI	ACTGG	1 cut(s)	466
BseRI	GAGGAG	1 cut(s)	232
BseXI	GCAGC	2 cut(s)	400, 619
BshFI	GGCC	2 cut(s)	5, 86
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	5
BslI	CCNNNNNNNGG	4 cut(s)	29, 530, 560, 656
BsmAI	GTCTC	2 cut(s)	231, 391
BsmFI	GGGAC	1 cut(s)	5
BsnI	GGCC	2 cut(s)	5, 86
Bsp13I	TCCGGA	1 cut(s)	136
Bsp143I	GATC	5 cut(s)	11, 117, 133, 204, 725
BspACI	CCGC	7 cut(s)	51, 69, 88, 304, 307, 310, 412
BspANI	GGCC	2 cut(s)	5, 86
BspCNI	CTCAG	3 cut(s)	257, 415, 641
BspEI	TCCGGA	1 cut(s)	136
BspHI	TCATGA	2 cut(s)	120, 676
BspMAI	CTGCAG	1 cut(s)	390
BspPI	GGATC	1 cut(s)	128
BsrDI	GCAATG	2 cut(s)	61, 258
BsrI	ACTGG	1 cut(s)	466
BssMI	GATC	5 cut(s)	11, 117, 133, 204, 725
Bst4CI	ACNGT	2 cut(s)	270, 408
Bst6I	CTCTTC	2 cut(s)	165, 222
BstC8I	GCNNGC	2 cut(s)	88, 562
BstDEI	CTNAG	3 cut(s)	244, 423, 628
BstF5I	GGATG	1 cut(s)	547
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	5 cut(s)	14, 120, 136, 207, 728
BstMAI	GTCTC	2 cut(s)	231, 391
BstMBI	GATC	5 cut(s)	11, 117, 133, 204, 725
BstSFI	CTRYAG	3 cut(s)	340, 386, 729
BstV1I	GCAGC	2 cut(s)	400, 619
BstV2I	GAAGAC	1 cut(s)	633
BstX2I	RGATCY	2 cut(s)	11, 725
BstYI	RGATCY	2 cut(s)	11, 725
BsuRI	GGCC	2 cut(s)	5, 86
BtgZI	GCGATG	1 cut(s)	464
BtsCI	GGATG	1 cut(s)	547
Cac8I	GCNNGC	2 cut(s)	88, 562
CaiI	CAGNNNCTG	1 cut(s)	251
CciI	TCATGA	2 cut(s)	120, 676
CfoI	GCGC	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	85
Csp6I	GTAC	2 cut(s)	59, 438
CviAII	CATG	4 cut(s)	17, 121, 511, 677
CviJI	RGCY	6 cut(s)	5, 86, 155, 331, 560, 632
CviKI_1	RGCY	6 cut(s)	5, 86, 155, 331, 560, 632
CviQI	GTAC	2 cut(s)	59, 438
DdeI	CTNAG	3 cut(s)	244, 423, 628
DpnI	GATC	5 cut(s)	13, 119, 135, 206, 727
DpnII	GATC	5 cut(s)	11, 117, 133, 204, 725
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	165, 222
EarI	CTCTTC	2 cut(s)	165, 222
Eco57I	CTGAAG	2 cut(s)	246, 627
FaeI	CATG	4 cut(s)	20, 124, 514, 680
FaqI	GGGAC	1 cut(s)	5
FatI	CATG	4 cut(s)	16, 120, 510, 676
FauI	CCCGC	2 cut(s)	95, 405
Fnu4HI	GCNGC	5 cut(s)	52, 307, 310, 389, 633
FokI	GGATG	1 cut(s)	554
Fsp4HI	GCNGC	5 cut(s)	52, 307, 310, 389, 633
FspBI	CTAG	4 cut(s)	291, 492, 723, 748
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	5 cut(s)	52, 307, 310, 389, 633
HaeIII	GGCC	2 cut(s)	5, 86
HapII	CCGG	1 cut(s)	137
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	4 cut(s)	20, 124, 514, 680
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HindIII	AAGCTT	1 cut(s)	153
HinfI	GANTC	9 cut(s)	124, 232, 239, 248, 254, 298, 323, 443, 514
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	3 cut(s)	151, 211, 293
Hpy188I	TCNGA	6 cut(s)	247, 253, 328, 424, 619, 646
Hpy188III	TCNNGA	7 cut(s)	22, 121, 137, 149, 236, 677, 723
HpyAV	CCTTC	1 cut(s)	185
HpyCH4III	ACNGT	2 cut(s)	270, 408
HpyCH4V	TGCA	1 cut(s)	388
HpyF3I	CTNAG	3 cut(s)	244, 423, 628
Hsp92II	CATG	4 cut(s)	20, 124, 514, 680
HspAI	GCGC	1 cut(s)	263
Kpn2I	TCCGGA	1 cut(s)	136
Kzo9I	GATC	5 cut(s)	11, 117, 133, 204, 725
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	5 cut(s)	150, 162, 298, 447, 546
Lsp1109I	GCAGC	2 cut(s)	400, 619
MaeI	CTAG	4 cut(s)	291, 492, 723, 748
MaeIII	GTNAC	3 cut(s)	299, 317, 733
MalI	GATC	5 cut(s)	13, 119, 135, 206, 727
MboI	GATC	5 cut(s)	11, 117, 133, 204, 725
MboII	GAAGA	8 cut(s)	127, 182, 214, 239, 441, 578, 619, 633
MflI	RGATCY	2 cut(s)	11, 725
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	26, 98, 370, 527, 581
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	233, 241, 307
MnlI	CCTC	2 cut(s)	133, 253
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	136
MroXI	GAANNNNTTC	1 cut(s)	463
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	663
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	632
MspI	CCGG	1 cut(s)	137
NdeII	GATC	5 cut(s)	11, 117, 133, 204, 725
NlaIII	CATG	4 cut(s)	20, 124, 514, 680
NmuCI	GTSAC	2 cut(s)	299, 317
PagI	TCATGA	2 cut(s)	120, 676
PdmI	GAANNNNTTC	1 cut(s)	463
PfeI	GAWTC	6 cut(s)	124, 248, 254, 323, 443, 514
PflMI	CCANNNNNTGG	3 cut(s)	530, 560, 656
PkrI	GCNGC	5 cut(s)	53, 308, 311, 390, 634
PleI	GAGTC	3 cut(s)	233, 240, 306
PpsI	GAGTC	3 cut(s)	233, 240, 306
PspPI	GGNCC	1 cut(s)	85
PstI	CTGCAG	1 cut(s)	390
PstNI	CAGNNNCTG	1 cut(s)	251
PsuI	RGATCY	2 cut(s)	11, 725
PvuII	CAGCTG	1 cut(s)	632
RsaI	GTAC	2 cut(s)	60, 439
RsaNI	GTAC	2 cut(s)	59, 438
SaqAI	TTAA	1 cut(s)	663
SatI	GCNGC	5 cut(s)	52, 307, 310, 389, 633
Sau3AI	GATC	5 cut(s)	11, 117, 133, 204, 725
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	3 cut(s)	233, 241, 307
SetI	ASST	5 cut(s)	157, 333, 562, 634, 705
SfcI	CTRYAG	3 cut(s)	340, 386, 729
Sse9I	AATT	5 cut(s)	26, 98, 370, 527, 581
SsiI	CCGC	7 cut(s)	51, 69, 88, 304, 307, 310, 412
SspMI	CTAG	4 cut(s)	291, 492, 723, 748
TaaI	ACNGT	2 cut(s)	270, 408
TaqI	TCGA	3 cut(s)	168, 235, 360
TasI	AATT	5 cut(s)	26, 98, 370, 527, 581
TatI	WGTACW	1 cut(s)	437
TauI	GCSGC	3 cut(s)	54, 309, 312
TfiI	GAWTC	6 cut(s)	124, 248, 254, 323, 443, 514
Tru1I	TTAA	1 cut(s)	663
Tru9I	TTAA	1 cut(s)	663
TseFI	GTSAC	2 cut(s)	299, 317
TseI	GCWGC	2 cut(s)	388, 632
Tsp45I	GTSAC	2 cut(s)	299, 317
TspDTI	ATGAA	5 cut(s)	137, 363, 435, 615, 693
TspGWI	ACGGA	1 cut(s)	409
Van91I	CCANNNNNTGG	3 cut(s)	530, 560, 656
XapI	RAATTY	3 cut(s)	26, 527, 581
XbaI	TCTAGA	1 cut(s)	722
XmnI	GAANNNNTTC	1 cut(s)	463
XspI	CTAG	4 cut(s)	291, 492, 723, 748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.