Rmu_ssc0000237.1_g000019
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000237.1
OG0014682
Physical Location & Seq
Forward (+)
68576 .. 75816
7241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000237.1_g000019.1.cds

Sequence Viewer

Length: 1596 bp
atgagtacctctgatgagcagaaaagatctcatgtcccgaaattcggcgattggaacaacaaggacggcaatgtaccatacaccgccgtttttgacaaggcccgcaagggtaaattgaaagatggagtgaagatcatgaatccaaatgatccggaggaaaatccagaagctttcaccaccatcgacgagaaagagaaagtgaaagaaggggtggtgaagatcaaactccctatcgttgctgaagagagtcgagactcctcagaatctgaatccattgcgccacagttgtcatatattagtcgtgctagtttgagtcaccgccgccgcaggagtgacgaatcggagctatctgtctatagtgaaaagatgagtttcgagcgtaataattcatcacttatactgcagcaacggagacaacaacggttgcgggagaaatctgagaaaaagaaaaagatgaaggtggttgctgcttatatgctggctgttttgggagggaacgccagtccctctacggatgatttgaagaaaattcttggatcagttggagctgaggctgatgacgataggattgagttgatgttgtcccaagttaaaggtaagtgtatcactgagctagttgcatgcggaagagagaagatggcatctgttccttctagtggcggtgcagttgatgttgccacaattgcaacaggtgacgttgctccttctgctgagcacaaggaagagaaggttgaagaggatgaagagtccgataatctacctctcaatgcagttacatctataagtgatggcttgaagaaattgtacattgaaaaactaaaaccactggaagctgcatatcgtttcaatgattttggtaatccattactggtttgggcgattgctgattcgaaacgacagggttttttagggtttactgagttcattacagcaatgcagctgatttcctttgcgcaagatcatgaattaagtccagacatcctcaaagctgaagttgactgggagaacattaaacctccagtgatcgatggtgtggatgctttaatagctaaaactaagagttctacaacaaatggagttgccctgaatggaaatggaatcactcctaatcaaccatcagctgaacggactacttcaaaatcagtgaagaaactacctctcaatgcagttacatctataagtgatggcttgaagaaattgtacattgaaaaactaaaaccactggaagctgcatatcgtttcaatgattttggtaatccattactgatcaatgaatttgtgaaacgtgctagagctgcaaagattcatgcctacataattagccatcttaagaaagagatgcctgcaatgatgggcaaatctaagactcagaagcgactcatggaaaatcttgaagaagagttcgcaaaggttcagaaagagtttcatttaccagcaggcgactttccaaatgttgaacaatttcgagaggtcttgagcaattacaacatcgacaaatttgagaaagtgaagcctaagatgatccaagctgtagatgacatgcttggatatgaaatcccggagctcttgaagaatctcagaaacccctatgattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0005911 GO:0005929 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007275 GO:0007399 GO:0008104 GO:0008150 GO:0009506 GO:0009719 GO:0009987 GO:0010008 GO:0010033 GO:0010830 GO:0010831 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0020016 GO:0020018 GO:0022008 GO:0022603 GO:0022607 GO:0030030 GO:0030031 GO:0030054 GO:0030154 GO:0030182 GO:0031090 GO:0031175 GO:0031253 GO:0031410 GO:0031901 GO:0031982 GO:0032386 GO:0032388 GO:0032456 GO:0032501 GO:0032502 GO:0032879 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044441 GO:0044444 GO:0044446 GO:0044459 GO:0044463 GO:0044464 GO:0044782 GO:0045184 GO:0045595 GO:0045597 GO:0046907 GO:0048468 GO:0048518 GO:0048522 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051493 GO:0051641 GO:0051649 GO:0051716 GO:0055037 GO:0055038 GO:0055044 GO:0060142 GO:0060143 GO:0060170 GO:0060271 GO:0060341 GO:0060627 GO:0061512 GO:0065003 GO:0065007 GO:0070727 GO:0070848 GO:0070887 GO:0070925 GO:0071310 GO:0071363 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098590 GO:0098657 GO:0098805 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901739 GO:1901741 GO:1990089 GO:1990090 GO:2001135 GO:2001137
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Dynamin_N EF-hand_4 EF-hand_7 EHD_N

Protein Analysis

531

Amino Acids

59.35

Weight (kDa)

6.73

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 954
AccIII TCCGGA 1 cut(s) 151
AciI CCGC 8 cut(s) 84, 103, 319, 322, 325, 427, 624, 660
AclWI GGATC 3 cut(s) 143, 544, 1516
AcsI RAATTY 4 cut(s) 41, 528, 1274, 1496
AcuI CTGAAG 2 cut(s) 261, 1011
AfaI GTAC 4 cut(s) 7, 75, 806, 1202
AfiI CCNNNNNNNGG 2 cut(s) 44, 656
AflII CTTAAG 1 cut(s) 1328
Alw21I GWGCWC 2 cut(s) 717, 1566
Alw26I GTCTC 2 cut(s) 246, 406
AlwI GGATC 3 cut(s) 143, 544, 1516
AlwNI CAGNNNCTG 1 cut(s) 266
Aor13HI TCCGGA 1 cut(s) 151
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 6 cut(s) 403, 467, 833, 937, 1229, 1295
ApoI RAATTY 4 cut(s) 41, 528, 1274, 1496
Asp700I GAANNNNTTC 1 cut(s) 1461
AspLEI GCGC 2 cut(s) 280, 955
AspS9I GGNCC 1 cut(s) 100
AsuC2I CCSGG 1 cut(s) 1559
AsuHPI GGTGA 4 cut(s) 166, 226, 308, 704
AsuII TTCGAA 1 cut(s) 890
BanII GRGCYC 1 cut(s) 1566
BarI GAAGNNNNNNTAC 4 cut(s) 788, 820, 1184, 1216
Bbv12I GWGCWC 2 cut(s) 717, 1566
BbvCI CCTCAGC 1 cut(s) 549
BbvI GCAGC 6 cut(s) 415, 454, 820, 949, 1216, 1282
BccI CCATC 9 cut(s) 116, 188, 631, 782, 1022, 1123, 1178, 1332, 1345
BceAI ACGGC 2 cut(s) 71, 82
BclI TGATCA 1 cut(s) 1266
BcnI CCSGG 1 cut(s) 1559
BcoDI GTCTC 2 cut(s) 246, 406
BfaI CTAG 4 cut(s) 306, 614, 654, 1290
BfmI CTRYAG 3 cut(s) 355, 401, 1530
BfrI CTTAAG 1 cut(s) 1328
BglII AGATCT 1 cut(s) 26
BisI GCNGC 8 cut(s) 322, 325, 404, 468, 834, 938, 1230, 1296
BlpI GCTNAGC 1 cut(s) 711
BlsI GCNGC 8 cut(s) 323, 326, 405, 469, 835, 939, 1231, 1297
Bme1390I CCNGG 1 cut(s) 1559
BmgT120I GGNCC 1 cut(s) 100
BmrFI CCNGG 1 cut(s) 1559
BmrI ACTGGG 1 cut(s) 1009
BmsI GCATC 3 cut(s) 650, 1027, 1329
BmuI ACTGGG 1 cut(s) 1009
BpmI CTGGAG 1 cut(s) 1002
Bpu10I CCTNAGC 1 cut(s) 549
Bpu1102I GCTNAGC 1 cut(s) 711
Bpu14I TTCGAA 1 cut(s) 890
BpuEI CTTGAG 1 cut(s) 1495
BpuMI CCSGG 1 cut(s) 1559
Bsa29I ATCGAT 1 cut(s) 1026
BsaWI WCCGGW 1 cut(s) 151
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 656
Bse1I ACTGG 6 cut(s) 501, 831, 873, 1004, 1019, 1227
Bse3DI GCAATG 4 cut(s) 76, 273, 939, 1353
BseAI TCCGGA 1 cut(s) 151
BseCI ATCGAT 1 cut(s) 1026
BseGI GGATG 4 cut(s) 520, 745, 978, 1042
BseLI CCNNNNNNNGG 2 cut(s) 44, 656
BseMI GCAATG 4 cut(s) 76, 273, 939, 1353
BseMII CTCAG 8 cut(s) 273, 429, 540, 600, 702, 909, 1382, 1591
BseNI ACTGG 6 cut(s) 501, 831, 873, 1004, 1019, 1227
BseRI GAGGAG 1 cut(s) 247
BseXI GCAGC 6 cut(s) 415, 454, 820, 949, 1216, 1282
BsgI GTGCAG 1 cut(s) 684
BshFI GGCC 1 cut(s) 101
BshVI ATCGAT 1 cut(s) 1026
BsiHKAI GWGCWC 2 cut(s) 717, 1566
BsiSI CCGG 2 cut(s) 152, 1559
BslFI GGGAC 3 cut(s) 20, 489, 568
BslI CCNNNNNNNGG 2 cut(s) 44, 656
BsmAI GTCTC 2 cut(s) 246, 406
BsmFI GGGAC 3 cut(s) 20, 489, 568
BsnI GGCC 1 cut(s) 101
Bsp119I TTCGAA 1 cut(s) 890
Bsp1286I GDGCHC 2 cut(s) 717, 1566
Bsp13I TCCGGA 1 cut(s) 151
Bsp1407I TGTACA 2 cut(s) 804, 1200
Bsp143I GATC 9 cut(s) 26, 132, 148, 219, 536, 958, 1023, 1266, 1521
Bsp1720I GCTNAGC 1 cut(s) 711
BspACI CCGC 8 cut(s) 84, 103, 319, 322, 325, 427, 624, 660
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 8 cut(s) 272, 430, 541, 601, 703, 910, 1381, 1590
BspDI ATCGAT 1 cut(s) 1026
BspEI TCCGGA 1 cut(s) 151
BspHI TCATGA 2 cut(s) 135, 961
BspMAI CTGCAG 1 cut(s) 405
BspPI GGATC 3 cut(s) 143, 544, 1516
BspT104I TTCGAA 1 cut(s) 890
BspTI CTTAAG 1 cut(s) 1328
BsrDI GCAATG 4 cut(s) 76, 273, 939, 1353
BsrGI TGTACA 2 cut(s) 804, 1200
BsrI ACTGG 6 cut(s) 501, 831, 873, 1004, 1019, 1227
BssMI GATC 9 cut(s) 26, 132, 148, 219, 536, 958, 1023, 1266, 1521
Bst4CI ACNGT 2 cut(s) 285, 423
Bst6I CTCTTC 6 cut(s) 237, 622, 717, 729, 738, 1392
BstAFI CTTAAG 1 cut(s) 1328
BstAUI TGTACA 2 cut(s) 804, 1200
BstBI TTCGAA 1 cut(s) 890
BstC8I GCNNGC 5 cut(s) 103, 480, 622, 1344, 1438
BstF5I GGATG 4 cut(s) 520, 745, 978, 1042
BstHHI GCGC 2 cut(s) 280, 955
BstKTI GATC 9 cut(s) 29, 135, 151, 222, 539, 961, 1026, 1269, 1524
BstMAI GTCTC 2 cut(s) 246, 406
BstMBI GATC 9 cut(s) 26, 132, 148, 219, 536, 958, 1023, 1266, 1521
BstMWI GCNNNNNNNGC 4 cut(s) 683, 707, 1046, 1295
BstNSI RCATGY 2 cut(s) 624, 1543
BstSCI CCNGG 1 cut(s) 1557
BstSFI CTRYAG 3 cut(s) 355, 401, 1530
BstV1I GCAGC 6 cut(s) 415, 454, 820, 949, 1216, 1282
BstX2I RGATCY 1 cut(s) 26
BstYI RGATCY 1 cut(s) 26
Bsu15I ATCGAT 1 cut(s) 1026
BsuRI GGCC 1 cut(s) 101
BsuTUI ATCGAT 1 cut(s) 1026
BtsCI GGATG 4 cut(s) 520, 745, 978, 1042
BtsIMutI CAGTG 5 cut(s) 606, 824, 1026, 1149, 1220
Cac8I GCNNGC 5 cut(s) 103, 480, 622, 1344, 1438
CaiI CAGNNNCTG 1 cut(s) 266
CciI TCATGA 2 cut(s) 135, 961
CfoI GCGC 2 cut(s) 280, 955
Cfr13I GGNCC 1 cut(s) 100
ClaI ATCGAT 1 cut(s) 1026
Csp6I GTAC 4 cut(s) 6, 74, 805, 1201
CviAII CATG 7 cut(s) 32, 136, 621, 962, 1307, 1381, 1540
CviQI GTAC 4 cut(s) 6, 74, 805, 1201
DpnI GATC 9 cut(s) 28, 134, 150, 221, 538, 960, 1025, 1268, 1523
DpnII GATC 9 cut(s) 26, 132, 148, 219, 536, 958, 1023, 1266, 1521
Eam1104I CTCTTC 6 cut(s) 237, 622, 717, 729, 738, 1392
EarI CTCTTC 6 cut(s) 237, 622, 717, 729, 738, 1392
Ecl136II GAGCTC 1 cut(s) 1564
Eco24I GRGCYC 1 cut(s) 1566
Eco53kI GAGCTC 1 cut(s) 1564
Eco57I CTGAAG 2 cut(s) 261, 1011
EcoICRI GAGCTC 1 cut(s) 1564
EcoT38I GRGCYC 1 cut(s) 1566
FaeI CATG 7 cut(s) 35, 139, 624, 965, 1310, 1384, 1543
FaqI GGGAC 3 cut(s) 20, 489, 568
FatI CATG 7 cut(s) 31, 135, 620, 961, 1306, 1380, 1539
FauI CCCGC 2 cut(s) 110, 420
FbaI TGATCA 1 cut(s) 1266
Fnu4HI GCNGC 8 cut(s) 322, 325, 404, 468, 834, 938, 1230, 1296
FokI GGATG 4 cut(s) 527, 752, 965, 1049
FriOI GRGCYC 1 cut(s) 1566
Fsp4HI GCNGC 8 cut(s) 322, 325, 404, 468, 834, 938, 1230, 1296
FspBI CTAG 4 cut(s) 306, 614, 654, 1290
FspI TGCGCA 1 cut(s) 954
GlaI GCGC 2 cut(s) 279, 954
GluI GCNGC 8 cut(s) 322, 325, 404, 468, 834, 938, 1230, 1296
GsuI CTGGAG 1 cut(s) 1002
HaeIII GGCC 1 cut(s) 101
HapII CCGG 2 cut(s) 152, 1559
HhaI GCGC 2 cut(s) 280, 955
Hin1II CATG 7 cut(s) 35, 139, 624, 965, 1310, 1384, 1543
Hin6I GCGC 2 cut(s) 278, 953
HinP1I GCGC 2 cut(s) 278, 953
HincII GTYRAC 1 cut(s) 997
HindII GTYRAC 1 cut(s) 997
HindIII AAGCTT 1 cut(s) 168
HpaII CCGG 2 cut(s) 152, 1559
HphI GGTGA 4 cut(s) 166, 226, 308, 704
Hpy166II GTNNAC 2 cut(s) 915, 997
Hpy188I TCNGA 9 cut(s) 13, 262, 268, 343, 439, 751, 1371, 1416, 1580
Hpy8I GTNNAC 2 cut(s) 915, 997
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 5 cut(s) 200, 451, 660, 714, 721
HpyCH4III ACNGT 2 cut(s) 285, 423
HpyCH4IV ACGT 2 cut(s) 696, 1285
HpyF10VI GCNNNNNNNGC 4 cut(s) 683, 707, 1046, 1295
HpySE526I ACGT 2 cut(s) 696, 1285
Hsp92II CATG 7 cut(s) 35, 139, 624, 965, 1310, 1384, 1543
HspAI GCGC 2 cut(s) 278, 953
Kpn2I TCCGGA 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 1266
Kzo9I GATC 9 cut(s) 26, 132, 148, 219, 536, 958, 1023, 1266, 1521
LmnI GCTCC 4 cut(s) 343, 545, 706, 1561
Lsp1109I GCAGC 6 cut(s) 415, 454, 820, 949, 1216, 1282
LweI GCATC 3 cut(s) 650, 1027, 1329
MaeI CTAG 4 cut(s) 306, 614, 654, 1290
MaeII ACGT 2 cut(s) 696, 1285
MaeIII GTNAC 5 cut(s) 314, 332, 692, 772, 1168
MalI GATC 9 cut(s) 28, 134, 150, 221, 538, 960, 1025, 1268, 1523
MboI GATC 9 cut(s) 26, 132, 148, 219, 536, 958, 1023, 1266, 1521
MfeI CAATTG 1 cut(s) 681
MflI RGATCY 1 cut(s) 26
MhlI GDGCHC 2 cut(s) 717, 1566
MlyI GAGTC 6 cut(s) 248, 256, 322, 755, 1360, 1371
MmeI TCCRAC 1 cut(s) 523
MroI TCCGGA 1 cut(s) 151
MroXI GAANNNNTTC 1 cut(s) 1461
MseI TTAA 6 cut(s) 591, 968, 1011, 1043, 1329, 1594
MspA1I CMGCKG 2 cut(s) 940, 1121
MspCI CTTAAG 1 cut(s) 1328
MspI CCGG 2 cut(s) 152, 1559
MspR9I CCNGG 1 cut(s) 1559
MunI CAATTG 1 cut(s) 681
MwoI GCNNNNNNNGC 4 cut(s) 683, 707, 1046, 1295
NciI CCSGG 1 cut(s) 1559
NdeII GATC 9 cut(s) 26, 132, 148, 219, 536, 958, 1023, 1266, 1521
NlaIII CATG 7 cut(s) 35, 139, 624, 965, 1310, 1384, 1543
NmuCI GTSAC 3 cut(s) 314, 332, 692
NsbI TGCGCA 1 cut(s) 954
NspI RCATGY 2 cut(s) 624, 1543
NspV TTCGAA 1 cut(s) 890
PaeI GCATGC 1 cut(s) 624
PagI TCATGA 2 cut(s) 135, 961
PdmI GAANNNNTTC 1 cut(s) 1461
PfeI GAWTC 8 cut(s) 139, 263, 269, 338, 887, 1098, 1303, 1573
PfoI TCCNGGA 1 cut(s) 1557
PkrI GCNGC 8 cut(s) 323, 326, 405, 469, 835, 939, 1231, 1297
PleI GAGTC 6 cut(s) 248, 255, 321, 754, 1360, 1371
PpsI GAGTC 6 cut(s) 248, 255, 321, 754, 1360, 1371
Psp124BI GAGCTC 1 cut(s) 1566
PspPI GGNCC 1 cut(s) 100
PstI CTGCAG 1 cut(s) 405
PstNI CAGNNNCTG 1 cut(s) 266
PsuI RGATCY 1 cut(s) 26
PvuII CAGCTG 2 cut(s) 940, 1121
RsaI GTAC 4 cut(s) 7, 75, 806, 1202
RsaNI GTAC 4 cut(s) 6, 74, 805, 1201
SacI GAGCTC 1 cut(s) 1566
SaqAI TTAA 6 cut(s) 591, 968, 1011, 1043, 1329, 1594
SatI GCNGC 8 cut(s) 322, 325, 404, 468, 834, 938, 1230, 1296
Sau3AI GATC 9 cut(s) 26, 132, 148, 219, 536, 958, 1023, 1266, 1521
Sau96I GGNCC 1 cut(s) 100
SchI GAGTC 6 cut(s) 248, 256, 322, 755, 1360, 1371
ScrFI CCNGG 1 cut(s) 1559
SduI GDGCHC 2 cut(s) 717, 1566
SfaNI GCATC 3 cut(s) 650, 1027, 1329
SfcI CTRYAG 3 cut(s) 355, 401, 1530
SfuI TTCGAA 1 cut(s) 890
SmlI CTYRAG 2 cut(s) 1328, 1474
SmoI CTYRAG 2 cut(s) 1328, 1474
SphI GCATGC 1 cut(s) 624
SsiI CCGC 8 cut(s) 84, 103, 319, 322, 325, 427, 624, 660
SspMI CTAG 4 cut(s) 306, 614, 654, 1290
SstI GAGCTC 1 cut(s) 1566
StyD4I CCNGG 1 cut(s) 1557
TaaI ACNGT 2 cut(s) 285, 423
TaiI ACGT 2 cut(s) 699, 1288
TaqI TCGA 7 cut(s) 183, 250, 375, 890, 1026, 1465, 1491
TatI WGTACW 2 cut(s) 804, 1200
TauI GCSGC 2 cut(s) 324, 327
TfiI GAWTC 8 cut(s) 139, 263, 269, 338, 887, 1098, 1303, 1573
Tru1I TTAA 6 cut(s) 591, 968, 1011, 1043, 1329, 1594
Tru9I TTAA 6 cut(s) 591, 968, 1011, 1043, 1329, 1594
TscAI CASTG 5 cut(s) 613, 831, 1026, 1149, 1227
TseFI GTSAC 3 cut(s) 314, 332, 692
TseI GCWGC 6 cut(s) 403, 467, 833, 937, 1229, 1295
Tsp45I GTSAC 3 cut(s) 314, 332, 692
TspGWI ACGGA 3 cut(s) 424, 527, 1141
TspRI CASTG 5 cut(s) 613, 831, 1026, 1149, 1227
Vha464I CTTAAG 1 cut(s) 1328
XapI RAATTY 4 cut(s) 41, 528, 1274, 1496
XceI RCATGY 2 cut(s) 624, 1543
XcmI CCANNNNNNNNNTGG 1 cut(s) 870
XmnI GAANNNNTTC 1 cut(s) 1461
XspI CTAG 4 cut(s) 306, 614, 654, 1290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.