Rorug04G0392600

RPM1-interacting protein 4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0014682
Physical Location & Seq
Forward (+)
55936503 .. 55939194
2692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0392600.1

Sequence Viewer

Length: 999 bp
ATGAGCGGAGCCCCTTTGAAATTCGAAACCCCAATCCAAGATGCAATTTCCAGAATCCGATTCGCTCCAACCTCACACAACCTTCTCATCTCTTCTTGGGACTCCAAACTGCGACTGTACGACGTGGGAAGCTCGGTGCTCAGATTAGAAGCTCCGGCCGAAGCTGCACTACTCGATTGTTGCTTCCAGAACGAGTCGGTTGCGTTTAGCGCCGGCTCCGATGGCTTCATTAGAAGGTATGACTTGCATTCTGGAATCTGTGAGATGATTGGAAACCATGATGACATAGCAACCTGCATAGGATATTCTGATGAAACAAGCCAAGTACTTACCGCTGGTTTGGACAAGAAGATATTTGCCTGGGATGCACGTATGGAGGAGGGTAAAAAATCTGTGTTTGTAAAAAGTCTTGACTCAGAGGTGACGTCCATGTCACTCTCGGGTCTCGATATGATGGTAACCATGGGAGCTTTAATATATGTGTGTGATTTGCGCAACCTCCAAAAACCATATGAATCAAAAGTTTCAGATTTGAACACAACGATTATATGTGGAAGTGCGATTCCTAATGCTAAAGGATTTGCGGTTGGCTCAGCAGATGGACGAGTGTCATTGGAGATTTTCCGTCCATCTAATTCAGATAACATCAGATATATGTTCCGGTGTCATCCGAAGTCAACTGATAGAAGATATCATCTAGCAGCGGTGAATGAAATTGTGTTCAATCCTCTCATTTACGGTGCCCTTCTTACTGGTGATGATGAGGGTCATGTTATTGCATGGAATGCTCAAAGCAGAAAGAGGCTATTTCAGTTGCCTAGGTACCCAAATAGCGTGGCATCCTTATCGTATCACCACCAGGGACAACTTCTGGCCGTTGCATCAAGCTACACATATCGGCAAGCTATTGAATCAGAAGAGCTCCCTCAGATATTTATACATGAAATTGGCGATGCTAACATGAGATCAGCTGACATAGGAAGTTCGAGCCGCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AvrRpt-cleavage

Protein Analysis

332

Amino Acids

36.68

Weight (kDa)

5.73

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WDR55 PF24796 12 - 229 5.2e-06 WDR55
Beta-prop_WDR5 PF25175 13 - 296 8.3e-17 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 14 - 122 5.9e-07 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 58 - 297 5.8e-11 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 63 - 205 5.7e-06 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 91 - 267 1.6e-06 CDC20/Fizzy WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 430
AatII GACGTC 1 cut(s) 428
Acc16I TGCGCA 1 cut(s) 494
Acc36I ACCTGC 1 cut(s) 302
Acc65I GGTACC 1 cut(s) 822
AccB1I GGYRCC 2 cut(s) 740, 822
AccBSI CCGCTC 1 cut(s) 6
AciI CCGC 5 cut(s) 6, 333, 584, 704, 991
AcoI YGGCCR 2 cut(s) 156, 873
AcsI RAATTY 1 cut(s) 20
AcyI GRCGYC 1 cut(s) 425
AfaI GTAC 3 cut(s) 119, 327, 824
AgsI TTSAA 4 cut(s) 19, 535, 724, 911
AjiI CACGTC 1 cut(s) 124
AjnI CCWGG 2 cut(s) 359, 858
AluBI AGCT 8 cut(s) 132, 152, 164, 470, 888, 905, 922, 971
AluI AGCT 8 cut(s) 132, 152, 164, 470, 888, 905, 922, 971
Alw21I GWGCWC 2 cut(s) 141, 924
Alw26I GTCTC 1 cut(s) 449
Ama87I CYCGRG 1 cut(s) 439
AoxI GGCC 2 cut(s) 156, 873
ApeKI GCWGC 2 cut(s) 164, 701
ApoI RAATTY 1 cut(s) 20
Asp718I GGTACC 1 cut(s) 822
AspA2I CCTAGG 1 cut(s) 818
AspLEI GCGC 2 cut(s) 212, 495
AsuHPI GGTGA 4 cut(s) 433, 718, 767, 845
AsuII TTCGAA 1 cut(s) 24
AvaI CYCGRG 1 cut(s) 439
AvrII CCTAGG 1 cut(s) 818
BaeGI GKGCMC 1 cut(s) 745
BanI GGYRCC 2 cut(s) 740, 822
BanII GRGCYC 2 cut(s) 13, 924
BarI GAAGNNNNNNTAC 2 cut(s) 153, 185
Bbv12I GWGCWC 2 cut(s) 141, 924
BbvI GCAGC 2 cut(s) 151, 713
BccI CCATC 4 cut(s) 215, 448, 593, 637
BceAI ACGGC 1 cut(s) 860
BcgI CGANNNNNNTGC 4 cut(s) 182, 216, 828, 862
BciT130I CCWGG 2 cut(s) 361, 860
BcoDI GTCTC 1 cut(s) 449
BfaI CTAG 2 cut(s) 698, 819
BfoI RGCGCY 1 cut(s) 213
BfuAI ACCTGC 1 cut(s) 302
BisI GCNGC 3 cut(s) 165, 702, 991
BlnI CCTAGG 1 cut(s) 818
BlpI GCTNAGC 1 cut(s) 592
BlsI GCNGC 3 cut(s) 166, 703, 992
BmcAI AGTACT 1 cut(s) 327
Bme1390I CCNGG 2 cut(s) 361, 860
BmeT110I CYCGRG 1 cut(s) 439
BmgBI CACGTC 1 cut(s) 124
BmiI GGNNCC 4 cut(s) 10, 217, 742, 824
BmrFI CCNGG 2 cut(s) 361, 860
BmsI GCATC 5 cut(s) 31, 355, 848, 890, 943
BoxI GACNNNNGTC 1 cut(s) 607
Bpu1102I GCTNAGC 1 cut(s) 592
Bpu14I TTCGAA 1 cut(s) 24
BsaAI YACGTR 1 cut(s) 371
BsaHI GRCGYC 1 cut(s) 425
BsaI GGTCTC 1 cut(s) 449
BsaJI CCNNGG 4 cut(s) 360, 462, 818, 859
BsaWI WCCGGW 1 cut(s) 660
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 757
BseBI CCWGG 2 cut(s) 361, 860
BseDI CCNNGG 4 cut(s) 360, 462, 818, 859
BseGI GGATG 3 cut(s) 370, 667, 839
BseMII CTCAG 4 cut(s) 154, 429, 606, 941
BseNI ACTGG 1 cut(s) 757
BseRI GAGGAG 1 cut(s) 392
BseSI GKGCMC 1 cut(s) 745
BseX3I CGGCCG 1 cut(s) 156
BseXI GCAGC 2 cut(s) 151, 713
BsgI GTGCAG 1 cut(s) 150
Bsh1285I CGRYCG 1 cut(s) 159
BshFI GGCC 2 cut(s) 158, 875
BshNI GGYRCC 2 cut(s) 740, 822
BsiEI CGRYCG 1 cut(s) 159
BsiHKAI GWGCWC 2 cut(s) 141, 924
BsiHKCI CYCGRG 1 cut(s) 439
BsiSI CCGG 3 cut(s) 155, 213, 661
BslFI GGGAC 2 cut(s) 113, 876
BsmAI GTCTC 1 cut(s) 449
BsmFI GGGAC 2 cut(s) 113, 876
BsmI GAATGC 2 cut(s) 247, 790
BsnI GGCC 2 cut(s) 158, 875
Bso31I GGTCTC 1 cut(s) 449
BsoBI CYCGRG 1 cut(s) 439
Bsp119I TTCGAA 1 cut(s) 24
Bsp1286I GDGCHC 4 cut(s) 13, 141, 745, 924
Bsp143I GATC 1 cut(s) 965
Bsp1720I GCTNAGC 1 cut(s) 592
Bsp19I CCATGG 1 cut(s) 462
BspACI CCGC 5 cut(s) 6, 333, 584, 704, 991
BspANI GGCC 2 cut(s) 158, 875
BspCNI CTCAG 4 cut(s) 153, 428, 605, 940
BspLI GGNNCC 4 cut(s) 10, 217, 742, 824
BspMI ACCTGC 1 cut(s) 302
BspQI GCTCTTC 1 cut(s) 912
BspT104I TTCGAA 1 cut(s) 24
BspT107I GGYRCC 2 cut(s) 740, 822
BspTNI GGTCTC 1 cut(s) 449
BsrBI CCGCTC 1 cut(s) 6
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 1 cut(s) 757
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 4 cut(s) 360, 462, 818, 859
BssMI GATC 1 cut(s) 965
BssNI GRCGYC 1 cut(s) 425
BssT1I CCWWGG 2 cut(s) 462, 818
Bst2UI CCWGG 2 cut(s) 361, 860
Bst4CI ACNGT 2 cut(s) 117, 740
Bst6I CTCTTC 2 cut(s) 97, 912
BstACI GRCGYC 1 cut(s) 425
BstAPI GCANNNNNTGC 1 cut(s) 785
BstBAI YACGTR 1 cut(s) 371
BstBI TTCGAA 1 cut(s) 24
BstC8I GCNNGC 2 cut(s) 214, 903
BstDEI CTNAG 4 cut(s) 140, 415, 592, 927
BstDSI CCRYGG 1 cut(s) 462
BstEII GGTNACC 1 cut(s) 457
BstF5I GGATG 3 cut(s) 370, 667, 839
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 2 cut(s) 212, 495
BstKTI GATC 1 cut(s) 968
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 1 cut(s) 965
BstMCI CGRYCG 1 cut(s) 159
BstMWI GCNNNNNNNGC 5 cut(s) 164, 209, 222, 365, 785
BstNI CCWGG 2 cut(s) 361, 860
BstPAI GACNNNNGTC 1 cut(s) 607
BstPI GGTNACC 1 cut(s) 457
BstSCI CCNGG 2 cut(s) 359, 858
BstSLI GKGCMC 1 cut(s) 745
BstV1I GCAGC 2 cut(s) 151, 713
BstZI CGGCCG 1 cut(s) 156
BsuRI GGCC 2 cut(s) 158, 875
BtgI CCRYGG 1 cut(s) 462
BtgZI GCGATG 1 cut(s) 966
BtrI CACGTC 1 cut(s) 124
BtsCI GGATG 3 cut(s) 370, 667, 839
BveI ACCTGC 1 cut(s) 302
Cac8I GCNNGC 2 cut(s) 214, 903
CfoI GCGC 2 cut(s) 212, 495
Cfr10I RCCGGY 1 cut(s) 212
Csp6I GTAC 3 cut(s) 118, 326, 823
CspCI CAANNNNNGTGG 2 cut(s) 816, 851
CviAII CATG 7 cut(s) 278, 430, 463, 770, 780, 941, 961
CviQI GTAC 3 cut(s) 118, 326, 823
DdeI CTNAG 4 cut(s) 140, 415, 592, 927
DpnI GATC 1 cut(s) 967
DpnII GATC 1 cut(s) 965
DrdI GACNNNNNNGTC 1 cut(s) 430
DseDI GACNNNNNNGTC 1 cut(s) 430
EaeI YGGCCR 2 cut(s) 156, 873
EagI CGGCCG 1 cut(s) 156
Eam1104I CTCTTC 2 cut(s) 97, 912
EarI CTCTTC 2 cut(s) 97, 912
Ecl136II GAGCTC 1 cut(s) 922
EclXI CGGCCG 1 cut(s) 156
Eco130I CCWWGG 2 cut(s) 462, 818
Eco24I GRGCYC 2 cut(s) 13, 924
Eco31I GGTCTC 1 cut(s) 449
Eco32I GATATC 1 cut(s) 692
Eco52I CGGCCG 1 cut(s) 156
Eco53kI GAGCTC 1 cut(s) 922
Eco88I CYCGRG 1 cut(s) 439
Eco91I GGTNACC 1 cut(s) 457
EcoICRI GAGCTC 1 cut(s) 922
EcoO65I GGTNACC 1 cut(s) 457
EcoRII CCWGG 2 cut(s) 359, 858
EcoRV GATATC 1 cut(s) 692
EcoT14I CCWWGG 2 cut(s) 462, 818
EcoT38I GRGCYC 2 cut(s) 13, 924
ErhI CCWWGG 2 cut(s) 462, 818
FaeI CATG 7 cut(s) 281, 433, 466, 773, 783, 944, 964
FaqI GGGAC 2 cut(s) 113, 876
FatI CATG 7 cut(s) 277, 429, 462, 769, 779, 940, 960
FauNDI CATATG 1 cut(s) 511
Fnu4HI GCNGC 3 cut(s) 165, 702, 991
FokI GGATG 3 cut(s) 377, 654, 826
FriOI GRGCYC 2 cut(s) 13, 924
Fsp4HI GCNGC 3 cut(s) 165, 702, 991
FspBI CTAG 2 cut(s) 698, 819
FspI TGCGCA 1 cut(s) 494
GlaI GCGC 2 cut(s) 211, 494
GluI GCNGC 3 cut(s) 165, 702, 991
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 2 cut(s) 158, 875
HapII CCGG 3 cut(s) 155, 213, 661
HhaI GCGC 2 cut(s) 212, 495
Hin1I GRCGYC 1 cut(s) 425
Hin1II CATG 7 cut(s) 281, 433, 466, 773, 783, 944, 964
Hin6I GCGC 2 cut(s) 210, 493
HinP1I GCGC 2 cut(s) 210, 493
HincII GTYRAC 1 cut(s) 678
HindII GTYRAC 1 cut(s) 678
HinfI GANTC 9 cut(s) 54, 60, 101, 194, 255, 413, 515, 562, 911
HpaII CCGG 3 cut(s) 155, 213, 661
HphI GGTGA 4 cut(s) 433, 718, 767, 845
Hpy166II GTNNAC 1 cut(s) 678
Hpy188III TCNNGA 5 cut(s) 51, 187, 252, 410, 446
Hpy8I GTNNAC 1 cut(s) 678
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 3 cut(s) 92, 228, 755
HpyCH4III ACNGT 2 cut(s) 117, 740
HpyCH4IV ACGT 3 cut(s) 123, 370, 425
HpyCH4V TGCA 7 cut(s) 44, 167, 247, 297, 368, 779, 881
HpyF10VI GCNNNNNNNGC 5 cut(s) 164, 209, 222, 365, 785
HpyF3I CTNAG 4 cut(s) 140, 415, 592, 927
HpySE526I ACGT 3 cut(s) 123, 370, 425
Hsp92I GRCGYC 1 cut(s) 425
Hsp92II CATG 7 cut(s) 281, 433, 466, 773, 783, 944, 964
HspAI GCGC 2 cut(s) 210, 493
KpnI GGTACC 1 cut(s) 826
KroI GCCGGC 1 cut(s) 212
KroNI GCCGGC 1 cut(s) 214
Kzo9I GATC 1 cut(s) 965
LguI GCTCTTC 1 cut(s) 912
LmnI GCTCC 6 cut(s) 8, 70, 157, 221, 467, 927
Lsp1109I GCAGC 2 cut(s) 151, 713
LweI GCATC 5 cut(s) 31, 355, 848, 890, 943
MaeI CTAG 2 cut(s) 698, 819
MaeII ACGT 3 cut(s) 123, 370, 425
MaeIII GTNAC 3 cut(s) 421, 432, 457
MalI GATC 1 cut(s) 967
MbiI CCGCTC 1 cut(s) 6
MboI GATC 1 cut(s) 965
MboII GAAGA 4 cut(s) 84, 361, 699, 929
MhlI GDGCHC 4 cut(s) 13, 141, 745, 924
MluCI AATT 5 cut(s) 20, 45, 634, 714, 945
MlyI GAGTC 3 cut(s) 95, 203, 407
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 9 cut(s) 82, 370, 373, 412, 509, 738, 757, 795, 936
MroNI GCCGGC 1 cut(s) 212
MseI TTAA 1 cut(s) 473
MspA1I CMGCKG 3 cut(s) 335, 704, 971
MspI CCGG 3 cut(s) 155, 213, 661
MspR9I CCNGG 2 cut(s) 361, 860
Mva1269I GAATGC 2 cut(s) 247, 790
MvaI CCWGG 2 cut(s) 361, 860
MwoI GCNNNNNNNGC 5 cut(s) 164, 209, 222, 365, 785
NaeI GCCGGC 1 cut(s) 214
NcoI CCATGG 1 cut(s) 462
NdeI CATATG 1 cut(s) 511
NdeII GATC 1 cut(s) 965
NgoMIV GCCGGC 1 cut(s) 212
NlaIII CATG 7 cut(s) 281, 433, 466, 773, 783, 944, 964
NlaIV GGNNCC 4 cut(s) 10, 217, 742, 824
NmuCI GTSAC 2 cut(s) 421, 432
NsbI TGCGCA 1 cut(s) 494
NspV TTCGAA 1 cut(s) 24
PciSI GCTCTTC 1 cut(s) 912
PctI GAATGC 2 cut(s) 247, 790
PdiI GCCGGC 1 cut(s) 214
PfeI GAWTC 6 cut(s) 54, 60, 255, 515, 562, 911
PkrI GCNGC 3 cut(s) 166, 703, 992
PleI GAGTC 3 cut(s) 95, 202, 407
PpsI GAGTC 3 cut(s) 95, 202, 407
Ppu21I YACGTR 1 cut(s) 371
PshAI GACNNNNGTC 1 cut(s) 607
Psp124BI GAGCTC 1 cut(s) 924
Psp6I CCWGG 2 cut(s) 359, 858
PspEI GGTNACC 1 cut(s) 457
PspGI CCWGG 2 cut(s) 359, 858
PspN4I GGNNCC 4 cut(s) 10, 217, 742, 824
PvuII CAGCTG 1 cut(s) 971
RsaI GTAC 3 cut(s) 119, 327, 824
RsaNI GTAC 3 cut(s) 118, 326, 823
SacI GAGCTC 1 cut(s) 924
SapI GCTCTTC 1 cut(s) 912
SaqAI TTAA 1 cut(s) 473
SatI GCNGC 3 cut(s) 165, 702, 991
Sau3AI GATC 1 cut(s) 965
ScaI AGTACT 1 cut(s) 327
SchI GAGTC 3 cut(s) 95, 203, 407
ScrFI CCNGG 2 cut(s) 361, 860
SduI GDGCHC 4 cut(s) 13, 141, 745, 924
SfaNI GCATC 5 cut(s) 31, 355, 848, 890, 943
SfuI TTCGAA 1 cut(s) 24
Sse9I AATT 5 cut(s) 20, 45, 634, 714, 945
SsiI CCGC 5 cut(s) 6, 333, 584, 704, 991
SspMI CTAG 2 cut(s) 698, 819
SstI GAGCTC 1 cut(s) 924
StyD4I CCNGG 2 cut(s) 359, 858
StyI CCWWGG 2 cut(s) 462, 818
TaaI ACNGT 2 cut(s) 117, 740
TaiI ACGT 3 cut(s) 126, 373, 428
TaqI TCGA 4 cut(s) 24, 174, 447, 986
TasI AATT 5 cut(s) 20, 45, 634, 714, 945
TatI WGTACW 1 cut(s) 325
TauI GCSGC 1 cut(s) 993
TfiI GAWTC 6 cut(s) 54, 60, 255, 515, 562, 911
Tru1I TTAA 1 cut(s) 473
Tru9I TTAA 1 cut(s) 473
TseFI GTSAC 2 cut(s) 421, 432
TseI GCWGC 2 cut(s) 164, 701
Tsp45I GTSAC 2 cut(s) 421, 432
TspDTI ATGAA 5 cut(s) 217, 327, 528, 726, 957
TspGWI ACGGA 1 cut(s) 614
XapI RAATTY 1 cut(s) 20
XmaJI CCTAGG 1 cut(s) 818
XspI CTAG 2 cut(s) 698, 819
ZraI GACGTC 1 cut(s) 426
ZrmI AGTACT 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.