Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0014682

Physical Location & Seq

Genomic Coordinates Reverse (-)

7134012 .. 7135437

Gene Structure 1426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g07170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAGTACTTATGAGCAGAAAAGGCCTCATGTCCCGAAGTTCGGCGATTGGAACAACAAGGCCGGCACTATACTATACACTGTCGTTTTTGACAAAGCTCGCAAAGGTAAATTGAAAGATGGAGTGAAGATAATGAACCCCAACGATCCTGAGGAGAATCCAGAAACTTTCACCGTTATCGAGAAAAAGAAAGTGAAAGAAGGGCTGGTGAAGATCAAAATCCCTATTGTTGCCGGAGAAAATGGAGAGTACTCCTTGGAATCTGAAACCATTGCACCACAGTCATCACATATTAGAAGTTTGAGTCACCGCCGCCACAGTTTTGATGAAGCAGAGTTATCTGTGTGTAGTGAAAAGATGAGTTTCAAATCTAATAATTCATCACATATACAACAAAGATTGCGAGAGAGATCTAAGAAGCAAAGTATGGATTCATTGACAAAAAGAACCGGTTCAACTGAGCATCATCACAAACATTCTAGTATTAGTGATATTGACATGATTCCAATGCCAAAATTTCGTGATTGGTATGAGAGGAACCCAAAATCAGGCGAAGATTTTACATACAAATTCAACAAAGTGAAAAAAGAACAAAAGAGTATATCTGATATGTTCTCAGCTGTTTTGTCTTCAAAACCGAACAACGGTCTCAATGCCAATAATTTTGAAAAAACCTCTTCTATATCAAAGATTTGTTGTTTCCACCTGTTTGTAAGAAGAAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

AvrRpt-cleavage

Protein Analysis

243

Amino Acids

27.84

Weight (kDa)

9.62

Isoelectric Point (pI)

50.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AvrRpt-cleavage	PF05627	6 - 37	8.1e-10	Cleavage site for pathogenic type III effector avirulence factor Avr
AvrRpt-cleavage	PF05627	171 - 199	1.8e-06	Cleavage site for pathogenic type III effector avirulence factor Avr

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014682)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g01180 FvH4_7g07170
prunus_persica	Prupe.4G013100_v2.0.a1
pyrus_communis	pycom03g15440 pycom10g27870
rosa_laevigata	RLG00000030967
rosa_multiflora	Rmu_sc0002524.1_g000001 Rmu_ssc0000237.1_g000019 Rmu_ssc0000237.1_g000020
rosa_roxburghii	Rroxscaffold_1G00071200 Rroxscaffold_1G00074570
rosa_rugosa	Rorug04G0392600
rosa_samantha	Rh5AG013800 Rh5BG017200 Rh5CG014800 Rh5DG015300
rosa_wichuraiana	Rw5G001350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	310, 313
AclWI	GGATC	1 cut(s)	140
AcsI	RAATTY	2 cut(s)	515, 569
AfaI	GTAC	2 cut(s)	7, 251
AfiI	CCNNNNNNNGG	3 cut(s)	41, 548, 644
AgeI	ACCGGT	1 cut(s)	449
AgsI	TTSAA	6 cut(s)	115, 367, 456, 574, 633, 668
AluBI	AGCT	2 cut(s)	98, 620
AluI	AGCT	2 cut(s)	98, 620
Alw26I	GTCTC	1 cut(s)	653
AlwI	GGATC	1 cut(s)	140
AoxI	GGCC	2 cut(s)	23, 60
ApoI	RAATTY	2 cut(s)	515, 569
AsiGI	ACCGGT	1 cut(s)	449
Asp700I	GAANNNNTTC	1 cut(s)	451
AsuHPI	GGTGA	3 cut(s)	163, 220, 299
AxyI	CCTNAGG	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	621
BccI	CCATC	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	653
BfaI	CTAG	1 cut(s)	480
BglII	AGATCT	1 cut(s)	410
BisI	GCNGC	1 cut(s)	313
BlsI	GCNGC	1 cut(s)	314
BmcAI	AGTACT	2 cut(s)	7, 251
BmiI	GGNNCC	1 cut(s)	539
BmsI	GCATC	1 cut(s)	472
BpiI	GAAGAC	1 cut(s)	621
BsaBI	GATNNNNATC	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	653
BsaJI	CCNNGG	1 cut(s)	255
BsaWI	WCCGGW	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 548, 644
Bse118I	RCCGGY	2 cut(s)	62, 449
Bse21I	CCTNAGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	270
Bse8I	GATNNNNATC	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	255
BseJI	GATNNNNATC	1 cut(s)	218
BseLI	CCNNNNNNNGG	3 cut(s)	41, 548, 644
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	3 cut(s)	141, 450, 630
BseRI	GAGGAG	1 cut(s)	167
BshFI	GGCC	2 cut(s)	25, 62
BshTI	ACCGGT	1 cut(s)	449
BsiSI	CCGG	3 cut(s)	63, 234, 450
BslFI	GGGAC	1 cut(s)	17
BslI	CCNNNNNNNGG	3 cut(s)	41, 548, 644
BsmAI	GTCTC	1 cut(s)	653
BsmFI	GGGAC	1 cut(s)	17
BsnI	GGCC	2 cut(s)	25, 62
Bso31I	GGTCTC	1 cut(s)	653
Bsp143I	GATC	3 cut(s)	145, 213, 410
BspACI	CCGC	2 cut(s)	310, 313
BspANI	GGCC	2 cut(s)	25, 62
BspCNI	CTCAG	3 cut(s)	142, 451, 629
BspLI	GGNNCC	1 cut(s)	539
BspPI	GGATC	1 cut(s)	140
BspTNI	GGTCTC	1 cut(s)	653
BsrDI	GCAATG	1 cut(s)	270
BsrFI	RCCGGY	2 cut(s)	62, 449
BssAI	RCCGGY	2 cut(s)	62, 449
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	3 cut(s)	145, 213, 410
BssT1I	CCWWGG	1 cut(s)	255
Bst4CI	ACNGT	5 cut(s)	82, 175, 282, 320, 647
Bst6I	CTCTTC	1 cut(s)	682
BstC8I	GCNNGC	2 cut(s)	64, 100
BstDEI	CTNAG	4 cut(s)	150, 414, 459, 616
BstKTI	GATC	3 cut(s)	148, 216, 413
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	3 cut(s)	145, 213, 410
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstV2I	GAAGAC	1 cut(s)	621
BstX2I	RGATCY	1 cut(s)	410
BstYI	RGATCY	1 cut(s)	410
Bsu36I	CCTNAGG	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	25, 62
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	2 cut(s)	64, 100
Cfr10I	RCCGGY	2 cut(s)	62, 449
Csp6I	GTAC	2 cut(s)	6, 250
CspAI	ACCGGT	1 cut(s)	449
CviAII	CATG	3 cut(s)	29, 499, 726
CviJI	RGCY	5 cut(s)	25, 62, 98, 205, 620
CviKI_1	RGCY	5 cut(s)	25, 62, 98, 205, 620
CviQI	GTAC	2 cut(s)	6, 250
DdeI	CTNAG	4 cut(s)	150, 414, 459, 616
DpnI	GATC	3 cut(s)	147, 215, 412
DpnII	GATC	3 cut(s)	145, 213, 410
Eam1104I	CTCTTC	1 cut(s)	682
EarI	CTCTTC	1 cut(s)	682
Eco130I	CCWWGG	1 cut(s)	255
Eco147I	AGGCCT	1 cut(s)	25
Eco31I	GGTCTC	1 cut(s)	653
Eco81I	CCTNAGG	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	3 cut(s)	32, 502, 729
FaqI	GGGAC	1 cut(s)	17
FatI	CATG	3 cut(s)	28, 498, 725
Fnu4HI	GCNGC	1 cut(s)	313
Fsp4HI	GCNGC	1 cut(s)	313
FspBI	CTAG	1 cut(s)	480
GluI	GCNGC	1 cut(s)	313
HaeIII	GGCC	2 cut(s)	25, 62
HapII	CCGG	3 cut(s)	63, 234, 450
Hin1II	CATG	3 cut(s)	32, 502, 729
HinfI	GANTC	5 cut(s)	157, 260, 304, 431, 502
HpaII	CCGG	3 cut(s)	63, 234, 450
HphI	GGTGA	3 cut(s)	163, 220, 299
Hpy188I	TCNGA	2 cut(s)	265, 607
Hpy188III	TCNNGA	5 cut(s)	34, 149, 161, 181, 521
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	5 cut(s)	82, 175, 282, 320, 647
HpyCH4V	TGCA	1 cut(s)	275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	4 cut(s)	150, 414, 459, 616
Hsp92II	CATG	3 cut(s)	32, 502, 729
KroI	GCCGGC	1 cut(s)	62
KroNI	GCCGGC	1 cut(s)	64
Kzo9I	GATC	3 cut(s)	145, 213, 410
LpnPI	CCDG	8 cut(s)	76, 162, 174, 191, 247, 463, 534, 719
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	1 cut(s)	480
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	3 cut(s)	147, 215, 412
MboI	GATC	3 cut(s)	145, 213, 410
MboII	GAAGA	6 cut(s)	139, 223, 566, 621, 669, 729
MflI	RGATCY	1 cut(s)	410
MluCI	AATT	5 cut(s)	110, 376, 515, 569, 661
MlyI	GAGTC	1 cut(s)	313
MnlI	CCTC	4 cut(s)	36, 145, 528, 685
MroNI	GCCGGC	1 cut(s)	62
MroXI	GAANNNNTTC	1 cut(s)	451
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	3 cut(s)	63, 234, 450
MwoI	GCNNNNNNNGC	1 cut(s)	22
NaeI	GCCGGC	1 cut(s)	64
NdeII	GATC	3 cut(s)	145, 213, 410
NgoMIV	GCCGGC	1 cut(s)	62
NlaIII	CATG	3 cut(s)	32, 502, 729
NlaIV	GGNNCC	1 cut(s)	539
NmuCI	GTSAC	1 cut(s)	305
PceI	AGGCCT	1 cut(s)	25
PdiI	GCCGGC	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	451
PfeI	GAWTC	4 cut(s)	157, 260, 431, 502
PinAI	ACCGGT	1 cut(s)	449
PkrI	GCNGC	1 cut(s)	314
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	539
PsuI	RGATCY	1 cut(s)	410
PvuII	CAGCTG	1 cut(s)	620
RsaI	GTAC	2 cut(s)	7, 251
RsaNI	GTAC	2 cut(s)	6, 250
SatI	GCNGC	1 cut(s)	313
Sau3AI	GATC	3 cut(s)	145, 213, 410
ScaI	AGTACT	2 cut(s)	7, 251
SchI	GAGTC	1 cut(s)	313
SetI	ASST	5 cut(s)	100, 109, 622, 677, 708
SfaNI	GCATC	1 cut(s)	472
Sse9I	AATT	5 cut(s)	110, 376, 515, 569, 661
SseBI	AGGCCT	1 cut(s)	25
SsiI	CCGC	2 cut(s)	310, 313
SspMI	CTAG	1 cut(s)	480
StuI	AGGCCT	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	5 cut(s)	82, 175, 282, 320, 647
TaqI	TCGA	1 cut(s)	180
TasI	AATT	5 cut(s)	110, 376, 515, 569, 661
TatI	WGTACW	2 cut(s)	5, 249
TauI	GCSGC	1 cut(s)	315
TfiI	GAWTC	4 cut(s)	157, 260, 431, 502
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	4 cut(s)	149, 342, 369, 423
TspRI	CASTG	1 cut(s)	85
XapI	RAATTY	2 cut(s)	515, 569
XmnI	GAANNNNTTC	1 cut(s)	451
XspI	CTAG	1 cut(s)	480
ZrmI	AGTACT	2 cut(s)	7, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.