pycom03g15440
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0014682
Physical Location & Seq
Forward (+)
16701413 .. 16702259
847 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g15440.4

Sequence Viewer

Length: 474 bp
ATGCGAGTTTATATCGGCTCATTCAATGACAAACCTGTAAATGAGGCTGCTACGGGTCCAGTCGGGAAAGAACTCTTTGAAAAGGAACAGGGAGATCTTTTGTCTGATTTAAACGATATTCCAAAGAAGGCTTGTGAGCGCAAAATCAATGAATTTGTGAAGCGTGCCAGAGCTGCCAAGATACATGCATGCATAATTAGCCATTTAAAGGCGGAGATGCCTGCCATGTTTTGGAAATCTACGGCTCAACAGAAGCTTATTGATAATTTGGAAGACGAATTTAAAAAGGTTCAGGGGGAGCACCATCTGCCTCCAGGGGATTTCCCGGACGTAAACCGCTACAGGGACATCTTGAGTGGTTACAGCTTTGACAAATTCGAGACGTTAAAGCCTAAGATGATAGATGCCGTCGATGAAATGCTGGGTTATGATATCCCGGAACTCTTGAAGAAATTCAGAAATCCATTCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0005911 GO:0005929 GO:0006810 GO:0006886 GO:0006897 GO:0006950 GO:0006970 GO:0006972 GO:0006996 GO:0007275 GO:0007399 GO:0008104 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009987 GO:0010008 GO:0010033 GO:0010830 GO:0010831 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0020016 GO:0020018 GO:0022008 GO:0022603 GO:0022607 GO:0030030 GO:0030031 GO:0030054 GO:0030154 GO:0030182 GO:0031090 GO:0031175 GO:0031253 GO:0031410 GO:0031901 GO:0031982 GO:0032386 GO:0032388 GO:0032456 GO:0032501 GO:0032502 GO:0032879 GO:0033036 GO:0033365 GO:0034613 GO:0042221 GO:0042538 GO:0042886 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044441 GO:0044444 GO:0044446 GO:0044459 GO:0044463 GO:0044464 GO:0044782 GO:0045184 GO:0045595 GO:0045597 GO:0046907 GO:0048468 GO:0048518 GO:0048522 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051641 GO:0051649 GO:0051716 GO:0055037 GO:0055038 GO:0055044 GO:0060142 GO:0060143 GO:0060170 GO:0060271 GO:0060341 GO:0060627 GO:0061512 GO:0065003 GO:0065007 GO:0070727 GO:0070848 GO:0070887 GO:0070925 GO:0071310 GO:0071363 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098590 GO:0098657 GO:0098805 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901739 GO:1901741 GO:1990089 GO:1990090 GO:2001135 GO:2001137
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Dynamin_N EF-hand_4 EHD_N

Protein Analysis

158

Amino Acids

18.07

Weight (kDa)

6.11

Isoelectric Point (pI)

26.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 231
AciI CCGC 2 cut(s) 212, 337
AcsI RAATTY 4 cut(s) 152, 278, 374, 452
AfiI CCNNNNNNNGG 3 cut(s) 208, 231, 343
AgsI TTSAA 3 cut(s) 25, 80, 448
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 3 cut(s) 173, 256, 366
AluI AGCT 3 cut(s) 173, 256, 366
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 1 cut(s) 374
ApeKI GCWGC 2 cut(s) 47, 173
ApoI RAATTY 4 cut(s) 152, 278, 374, 452
Asp700I GAANNNNTTC 1 cut(s) 452
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 56
AsuC2I CCSGG 2 cut(s) 326, 437
AvaII GGWCC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 303
BbvI GCAGC 2 cut(s) 34, 160
BccI CCATC 1 cut(s) 312
BceAI ACGGC 2 cut(s) 258, 392
BciT130I CCWGG 1 cut(s) 315
BcnI CCSGG 2 cut(s) 326, 437
BcoDI GTCTC 1 cut(s) 374
BfmI CTRYAG 1 cut(s) 340
BglII AGATCT 1 cut(s) 94
BisI GCNGC 2 cut(s) 48, 174
BlsI GCNGC 2 cut(s) 49, 175
Bme1390I CCNGG 3 cut(s) 315, 326, 437
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 3 cut(s) 315, 326, 437
BmsI GCATC 2 cut(s) 207, 394
BpiI GAAGAC 1 cut(s) 279
BpmI CTGGAG 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 373
BpuMI CCSGG 2 cut(s) 326, 437
BsaJI CCNNGG 1 cut(s) 314
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 231, 343
Bse1I ACTGG 1 cut(s) 59
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 314
BseLI CCNNNNNNNGG 3 cut(s) 208, 231, 343
BseNI ACTGG 1 cut(s) 59
BseXI GCAGC 2 cut(s) 34, 160
BseYI CCCAGC 1 cut(s) 421
BsiHKAI GWGCWC 1 cut(s) 303
BsiSI CCGG 2 cut(s) 326, 437
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 3 cut(s) 208, 231, 343
BsmAI GTCTC 1 cut(s) 374
BsmBI CGTCTC 1 cut(s) 374
BsmFI GGGAC 1 cut(s) 359
Bsp1286I GDGCHC 1 cut(s) 303
Bsp143I GATC 1 cut(s) 94
BspACI CCGC 2 cut(s) 212, 337
BspLI GGNNCC 1 cut(s) 57
BsrI ACTGG 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 314
BssMI GATC 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 315
BstAPI GCANNNNNTGC 1 cut(s) 307
BstC8I GCNNGC 3 cut(s) 165, 190, 222
BstDEI CTNAG 1 cut(s) 393
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 1 cut(s) 97
BstMAI GTCTC 1 cut(s) 374
BstMBI GATC 1 cut(s) 94
BstMWI GCNNNNNNNGC 3 cut(s) 173, 198, 307
BstNI CCWGG 1 cut(s) 315
BstNSI RCATGY 2 cut(s) 188, 192
BstSCI CCNGG 3 cut(s) 313, 324, 435
BstSFI CTRYAG 1 cut(s) 340
BstV1I GCAGC 2 cut(s) 34, 160
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
Cac8I GCNNGC 3 cut(s) 165, 190, 222
CfoI GCGC 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 56
CviAII CATG 3 cut(s) 185, 189, 226
CviJI RGCY 9 cut(s) 18, 47, 131, 173, 201, 245, 256, 366, 391
CviKI_1 RGCY 9 cut(s) 18, 47, 131, 173, 201, 245, 256, 366, 391
DdeI CTNAG 1 cut(s) 393
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
DraI TTTAAA 3 cut(s) 111, 207, 283
EciI GGCGGA 1 cut(s) 227
Eco32I GATATC 1 cut(s) 433
Eco47I GGWCC 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 313
EcoRV GATATC 1 cut(s) 433
EcoT22I ATGCAT 2 cut(s) 190, 194
Esp3I CGTCTC 1 cut(s) 374
FaeI CATG 3 cut(s) 188, 192, 229
FaiI YATR 6 cut(s) 12, 186, 190, 194, 227, 429
FaqI GGGAC 1 cut(s) 359
FatI CATG 3 cut(s) 184, 188, 225
Fnu4HI GCNGC 2 cut(s) 48, 174
Fsp4HI GCNGC 2 cut(s) 48, 174
GlaI GCGC 1 cut(s) 140
GluI GCNGC 2 cut(s) 48, 174
GsaI CCCAGC 1 cut(s) 425
GsuI CTGGAG 1 cut(s) 297
HapII CCGG 2 cut(s) 326, 437
HhaI GCGC 1 cut(s) 141
Hin1II CATG 3 cut(s) 188, 192, 229
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HindIII AAGCTT 1 cut(s) 254
HpaII CCGG 2 cut(s) 326, 437
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 2 cut(s) 106, 458
Hpy188III TCNNGA 4 cut(s) 64, 352, 379, 445
Hpy8I GTNNAC 1 cut(s) 334
Hpy99I CGWCG 1 cut(s) 413
HpyAV CCTTC 1 cut(s) 121
HpyCH4IV ACGT 2 cut(s) 330, 383
HpyCH4V TGCA 2 cut(s) 188, 192
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 198, 307
HpyF3I CTNAG 1 cut(s) 393
HpySE526I ACGT 2 cut(s) 330, 383
Hsp92II CATG 3 cut(s) 188, 192, 229
HspAI GCGC 1 cut(s) 139
Kzo9I GATC 1 cut(s) 94
LmnI GCTCC 1 cut(s) 298
Lsp1109I GCAGC 2 cut(s) 34, 160
LweI GCATC 2 cut(s) 207, 394
MaeII ACGT 2 cut(s) 330, 383
MaeIII GTNAC 1 cut(s) 359
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 2 cut(s) 284, 460
MflI RGATCY 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 6 cut(s) 152, 195, 265, 278, 374, 452
MnlI CCTC 2 cut(s) 37, 321
Mph1103I ATGCAT 2 cut(s) 190, 194
MroXI GAANNNNTTC 1 cut(s) 452
MseI TTAA 4 cut(s) 110, 206, 282, 386
MspI CCGG 2 cut(s) 326, 437
MspR9I CCNGG 3 cut(s) 315, 326, 437
MvaI CCWGG 1 cut(s) 315
MwoI GCNNNNNNNGC 3 cut(s) 173, 198, 307
NciI CCSGG 2 cut(s) 326, 437
NdeII GATC 1 cut(s) 94
NlaIII CATG 3 cut(s) 188, 192, 229
NlaIV GGNNCC 1 cut(s) 57
NsiI ATGCAT 2 cut(s) 190, 194
NspI RCATGY 2 cut(s) 188, 192
PaeI GCATGC 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 452
PflMI CCANNNNNTGG 1 cut(s) 231
PfoI TCCNGGA 2 cut(s) 324, 435
PkrI GCNGC 2 cut(s) 49, 175
Psp6I CCWGG 1 cut(s) 313
PspFI CCCAGC 1 cut(s) 421
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 1 cut(s) 56
PsuI RGATCY 1 cut(s) 94
SaqAI TTAA 4 cut(s) 110, 206, 282, 386
SatI GCNGC 2 cut(s) 48, 174
Sau3AI GATC 1 cut(s) 94
Sau96I GGNCC 1 cut(s) 56
ScrFI CCNGG 3 cut(s) 315, 326, 437
SduI GDGCHC 1 cut(s) 303
SetI ASST 7 cut(s) 37, 175, 258, 291, 333, 368, 386
SfaNI GCATC 2 cut(s) 207, 394
SfcI CTRYAG 1 cut(s) 340
SinI GGWCC 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 352
SmoI CTYRAG 1 cut(s) 352
SphI GCATGC 1 cut(s) 192
Sse9I AATT 6 cut(s) 152, 195, 265, 278, 374, 452
SsiI CCGC 2 cut(s) 212, 337
StyD4I CCNGG 3 cut(s) 313, 324, 435
TaiI ACGT 2 cut(s) 333, 386
TaqI TCGA 3 cut(s) 378, 411, 468
TasI AATT 6 cut(s) 152, 195, 265, 278, 374, 452
Tru1I TTAA 4 cut(s) 110, 206, 282, 386
Tru9I TTAA 4 cut(s) 110, 206, 282, 386
TseI GCWGC 2 cut(s) 47, 173
TspDTI ATGAA 2 cut(s) 165, 429
Van91I CCANNNNNTGG 1 cut(s) 231
VpaK11BI GGWCC 1 cut(s) 56
XapI RAATTY 4 cut(s) 152, 278, 374, 452
XceI RCATGY 2 cut(s) 188, 192
XmnI GAANNNNTTC 1 cut(s) 452
Zsp2I ATGCAT 2 cut(s) 190, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.