Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000237.1

Orthogroup ID

OG0014682

Physical Location & Seq

Genomic Coordinates Forward (+)

76350 .. 77070

Gene Structure 721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000237.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atggaacaaggtgacctcctggctgacctggttgatataccaaagaaagcttgtgatcgccggatcaatgaatttgtgaaacgtgctagagctgcaaagattcatgcctacataattagccatcttaagaaagagatgcctgcaatgatgggcaaatctaagactcagaagcgactcatggaaaatcttgaagaagagttcgcaaaggttcagaaagagtttcatttaccagcaggcgactttccaaatgttgaacaatttcgagaggtcttgagcaattacaacatcgacaaatttgagaaagtgaagcctaagatgatccaagctgtagatgacatgcttggatatgaaatcccggagctcttgaagaatctcagaaacccctatgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0005911 GO:0005929 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007275 GO:0007399 GO:0008104 GO:0008150 GO:0009506 GO:0009719 GO:0009987 GO:0010008 GO:0010033 GO:0010830 GO:0010831 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0020016 GO:0020018 GO:0022008 GO:0022603 GO:0022607 GO:0030030 GO:0030031 GO:0030054 GO:0030154 GO:0030182 GO:0031090 GO:0031175 GO:0031253 GO:0031410 GO:0031901 GO:0031982 GO:0032386 GO:0032388 GO:0032456 GO:0032501 GO:0032502 GO:0032879 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044441 GO:0044444 GO:0044446 GO:0044459 GO:0044463 GO:0044464 GO:0044782 GO:0045184 GO:0045595 GO:0045597 GO:0046907 GO:0048468 GO:0048518 GO:0048522 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051493 GO:0051641 GO:0051649 GO:0051716 GO:0055037 GO:0055038 GO:0055044 GO:0060142 GO:0060143 GO:0060170 GO:0060271 GO:0060341 GO:0060627 GO:0061512 GO:0065003 GO:0065007 GO:0070727 GO:0070848 GO:0070887 GO:0070925 GO:0071310 GO:0071363 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098590 GO:0098657 GO:0098805 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901739 GO:1901741 GO:1990089 GO:1990090 GO:2001135 GO:2001137

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Dynamin_N EF-hand_4 EF-hand_7 EHD_N

Protein Analysis

130

Amino Acids

15.22

Weight (kDa)

7.81

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014682)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g01180 FvH4_7g07170
prunus_persica	Prupe.4G013100_v2.0.a1
pyrus_communis	pycom03g15440 pycom10g27870
rosa_laevigata	RLG00000030967
rosa_multiflora	Rmu_sc0002524.1_g000001 Rmu_ssc0000237.1_g000019 Rmu_ssc0000237.1_g000020
rosa_roxburghii	Rroxscaffold_1G00071200 Rroxscaffold_1G00074570
rosa_rugosa	Rorug04G0392600
rosa_samantha	Rh5AG013800 Rh5BG017200 Rh5CG014800 Rh5DG015300
rosa_wichuraiana	Rw5G001350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	71, 313
AcsI	RAATTY	2 cut(s)	71, 293
AflII	CTTAAG	1 cut(s)	125
AgsI	TTSAA	3 cut(s)	191, 254, 367
AjnI	CCWGG	2 cut(s)	18, 27
AluBI	AGCT	4 cut(s)	50, 92, 326, 361
AluI	AGCT	4 cut(s)	50, 92, 326, 361
Alw21I	GWGCWC	1 cut(s)	363
AlwI	GGATC	2 cut(s)	71, 313
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	2 cut(s)	71, 293
Asp700I	GAANNNNTTC	1 cut(s)	258
AsuC2I	CCSGG	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	2 cut(s)	129, 142
BciT130I	CCWGG	2 cut(s)	20, 29
BcnI	CCSGG	1 cut(s)	356
BfaI	CTAG	1 cut(s)	87
BfmI	CTRYAG	1 cut(s)	327
BfrI	CTTAAG	1 cut(s)	125
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
Bme1390I	CCNGG	3 cut(s)	20, 29, 356
BmrFI	CCNGG	3 cut(s)	20, 29, 356
BmsI	GCATC	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	292
BpuMI	CCSGG	1 cut(s)	356
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	2 cut(s)	20, 29
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	2 cut(s)	179, 388
BseXI	GCAGC	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	363
BsiSI	CCGG	2 cut(s)	61, 356
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	3 cut(s)	55, 63, 318
BspCNI	CTCAG	2 cut(s)	178, 387
BspPI	GGATC	2 cut(s)	71, 313
BspTI	CTTAAG	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	150
BssMI	GATC	3 cut(s)	55, 63, 318
Bst2UI	CCWGG	2 cut(s)	20, 29
Bst6I	CTCTTC	1 cut(s)	189
BstAFI	CTTAAG	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	141, 235
BstDEI	CTNAG	4 cut(s)	159, 165, 312, 374
BstEII	GGTNACC	1 cut(s)	11
BstKTI	GATC	3 cut(s)	58, 66, 321
BstMBI	GATC	3 cut(s)	55, 63, 318
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	2 cut(s)	20, 29
BstNSI	RCATGY	1 cut(s)	340
BstPI	GGTNACC	1 cut(s)	11
BstSCI	CCNGG	3 cut(s)	18, 27, 354
BstSFI	CTRYAG	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	79
Cac8I	GCNNGC	2 cut(s)	141, 235
CsiI	ACCWGGT	1 cut(s)	27
CviAII	CATG	3 cut(s)	104, 178, 337
CviJI	RGCY	7 cut(s)	23, 50, 92, 120, 310, 326, 361
CviKI_1	RGCY	7 cut(s)	23, 50, 92, 120, 310, 326, 361
DdeI	CTNAG	4 cut(s)	159, 165, 312, 374
DpnI	GATC	3 cut(s)	57, 65, 320
DpnII	GATC	3 cut(s)	55, 63, 318
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Ecl136II	GAGCTC	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	363
Eco53kI	GAGCTC	1 cut(s)	361
Eco91I	GGTNACC	1 cut(s)	11
EcoICRI	GAGCTC	1 cut(s)	361
EcoO65I	GGTNACC	1 cut(s)	11
EcoRII	CCWGG	2 cut(s)	18, 27
EcoT38I	GRGCYC	1 cut(s)	363
FaeI	CATG	3 cut(s)	107, 181, 340
FaiI	YATR	7 cut(s)	38, 105, 113, 179, 338, 348, 387
FatI	CATG	3 cut(s)	103, 177, 336
Fnu4HI	GCNGC	1 cut(s)	93
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	1 cut(s)	93
HapII	CCGG	2 cut(s)	61, 356
Hin1II	CATG	3 cut(s)	107, 181, 340
HindIII	AAGCTT	1 cut(s)	48
HinfI	GANTC	4 cut(s)	100, 163, 174, 370
HpaII	CCGG	2 cut(s)	61, 356
HphI	GGTGA	1 cut(s)	23
Hpy188I	TCNGA	3 cut(s)	168, 213, 377
Hpy188III	TCNNGA	4 cut(s)	188, 263, 271, 364
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	2 cut(s)	95, 143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	4 cut(s)	159, 165, 312, 374
HpySE526I	ACGT	1 cut(s)	82
Hsp92II	CATG	3 cut(s)	107, 181, 340
Kzo9I	GATC	3 cut(s)	55, 63, 318
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	9 cut(s)	5, 14, 32, 41, 74, 153, 219, 243, 369
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	126
MabI	ACCWGGT	1 cut(s)	27
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	3 cut(s)	57, 65, 320
MboI	GATC	3 cut(s)	55, 63, 318
MboII	GAAGA	3 cut(s)	203, 206, 379
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	5 cut(s)	71, 114, 257, 277, 293
MlyI	GAGTC	2 cut(s)	157, 168
MnlI	CCTC	2 cut(s)	26, 259
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	2 cut(s)	126, 391
MspCI	CTTAAG	1 cut(s)	125
MspI	CCGG	2 cut(s)	61, 356
MspR9I	CCNGG	3 cut(s)	20, 29, 356
MvaI	CCWGG	2 cut(s)	20, 29
MwoI	GCNNNNNNNGC	1 cut(s)	92
NciI	CCSGG	1 cut(s)	356
NdeII	GATC	3 cut(s)	55, 63, 318
NlaIII	CATG	3 cut(s)	107, 181, 340
NmuCI	GTSAC	1 cut(s)	11
NspI	RCATGY	1 cut(s)	340
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	2 cut(s)	100, 370
PfoI	TCCNGGA	1 cut(s)	354
PkrI	GCNGC	1 cut(s)	94
PleI	GAGTC	2 cut(s)	157, 168
PpsI	GAGTC	2 cut(s)	157, 168
Psp124BI	GAGCTC	1 cut(s)	363
Psp6I	CCWGG	2 cut(s)	18, 27
PspEI	GGTNACC	1 cut(s)	11
PspGI	CCWGG	2 cut(s)	18, 27
SacI	GAGCTC	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	126, 391
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	3 cut(s)	55, 63, 318
SchI	GAGTC	2 cut(s)	157, 168
ScrFI	CCNGG	3 cut(s)	20, 29, 356
SduI	GDGCHC	1 cut(s)	363
SexAI	ACCWGGT	1 cut(s)	27
SfaNI	GCATC	1 cut(s)	126
SfcI	CTRYAG	1 cut(s)	327
SmlI	CTYRAG	2 cut(s)	125, 271
SmoI	CTYRAG	2 cut(s)	125, 271
Sse9I	AATT	5 cut(s)	71, 114, 257, 277, 293
SspMI	CTAG	1 cut(s)	87
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	3 cut(s)	18, 27, 354
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	2 cut(s)	262, 288
TasI	AATT	5 cut(s)	71, 114, 257, 277, 293
TfiI	GAWTC	2 cut(s)	100, 370
Tru1I	TTAA	2 cut(s)	126, 391
Tru9I	TTAA	2 cut(s)	126, 391
TseFI	GTSAC	1 cut(s)	11
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	11
TspDTI	ATGAA	4 cut(s)	84, 92, 212, 363
Vha464I	CTTAAG	1 cut(s)	125
XapI	RAATTY	2 cut(s)	71, 293
XceI	RCATGY	1 cut(s)	340
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.