Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002524.1

Orthogroup ID

OG0014682

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1870

Gene Structure 1870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002524.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgagtacctctgatgagcagaaaagatctcatgtcccgaaattcggcgattggaacaacaaggacggcaatgtaccatacaccgccgtttttgacaaggcccgcaagggtaaattgaaagatggagtgaagatcatgaatccaaatgatccggaggaaaatccagaagctttcaccaccatcgacgagaaagagaaagtgaaagaaggggtggtgaagatcaaactccctatcgttgctgaagagagtcgagactcctcagaatctgaatccattgcgccacagttgtcatatattagtcgtgctagtttgagtcaccgccgccgcaggagtgacgaatcggagctatctgtctatagtgaaaagatgagtttcgagcgtaataattcatcacttatactgcagcaacggagacaacaacggttgcgggagaaatctgagaaaaagaaaagtacagattcatcttcaaaaagaactggttcaactgaacatcatcgcaaacattctagtattactgatattgacatgatt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002237 GO:0002253 GO:0002376 GO:0002682 GO:0002683 GO:0002684 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010204 GO:0010363 GO:0010941 GO:0012501 GO:0016020 GO:0016310 GO:0019538 GO:0019897 GO:0019898 GO:0023052 GO:0031347 GO:0031348 GO:0031349 GO:0033554 GO:0034050 GO:0034051 GO:0036211 GO:0042221 GO:0042742 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045824 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050777 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0080135 GO:0098542 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

AvrRpt-cleavage

Protein Analysis

177

Amino Acids

20.32

Weight (kDa)

9.32

Isoelectric Point (pI)

73.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014682)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g01180 FvH4_7g07170
prunus_persica	Prupe.4G013100_v2.0.a1
pyrus_communis	pycom03g15440 pycom10g27870
rosa_laevigata	RLG00000030967
rosa_multiflora	Rmu_sc0002524.1_g000001 Rmu_ssc0000237.1_g000019 Rmu_ssc0000237.1_g000020
rosa_roxburghii	Rroxscaffold_1G00071200 Rroxscaffold_1G00074570
rosa_rugosa	Rorug04G0392600
rosa_samantha	Rh5AG013800 Rh5BG017200 Rh5CG014800 Rh5DG015300
rosa_wichuraiana	Rw5G001350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	151
AciI	CCGC	6 cut(s)	84, 103, 319, 322, 325, 427
AclWI	GGATC	1 cut(s)	143
AcsI	RAATTY	1 cut(s)	41
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	3 cut(s)	7, 75, 454
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	3 cut(s)	118, 468, 483
AluBI	AGCT	2 cut(s)	170, 346
AluI	AGCT	2 cut(s)	170, 346
Alw26I	GTCTC	2 cut(s)	246, 406
AlwI	GGATC	1 cut(s)	143
AlwNI	CAGNNNCTG	1 cut(s)	266
Aor13HI	TCCGGA	1 cut(s)	151
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	403
ApoI	RAATTY	1 cut(s)	41
Asp700I	GAANNNNTTC	1 cut(s)	478
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	3 cut(s)	166, 226, 308
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	2 cut(s)	116, 188
BceAI	ACGGC	2 cut(s)	71, 82
BcoDI	GTCTC	2 cut(s)	246, 406
BfaI	CTAG	2 cut(s)	306, 507
BfmI	CTRYAG	2 cut(s)	355, 401
BglII	AGATCT	1 cut(s)	26
BisI	GCNGC	3 cut(s)	322, 325, 404
BlsI	GCNGC	3 cut(s)	323, 326, 405
BmgT120I	GGNCC	1 cut(s)	100
BsaWI	WCCGGW	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	481
Bse3DI	GCAATG	2 cut(s)	76, 273
BseAI	TCCGGA	1 cut(s)	151
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMI	GCAATG	2 cut(s)	76, 273
BseMII	CTCAG	2 cut(s)	273, 429
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	415
BshFI	GGCC	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	152
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	2 cut(s)	246, 406
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	101
Bsp13I	TCCGGA	1 cut(s)	151
Bsp143I	GATC	4 cut(s)	26, 132, 148, 219
BspACI	CCGC	6 cut(s)	84, 103, 319, 322, 325, 427
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	2 cut(s)	272, 430
BspEI	TCCGGA	1 cut(s)	151
BspHI	TCATGA	1 cut(s)	135
BspMAI	CTGCAG	1 cut(s)	405
BspPI	GGATC	1 cut(s)	143
BsrDI	GCAATG	2 cut(s)	76, 273
BsrI	ACTGG	1 cut(s)	481
BssMI	GATC	4 cut(s)	26, 132, 148, 219
Bst4CI	ACNGT	2 cut(s)	285, 423
Bst6I	CTCTTC	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	2 cut(s)	259, 438
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	4 cut(s)	29, 135, 151, 222
BstMAI	GTCTC	2 cut(s)	246, 406
BstMBI	GATC	4 cut(s)	26, 132, 148, 219
BstSFI	CTRYAG	2 cut(s)	355, 401
BstV1I	GCAGC	1 cut(s)	415
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	101
BtgZI	GCGATG	1 cut(s)	479
Cac8I	GCNNGC	1 cut(s)	103
CaiI	CAGNNNCTG	1 cut(s)	266
CciI	TCATGA	1 cut(s)	135
CfoI	GCGC	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	3 cut(s)	6, 74, 453
CviAII	CATG	3 cut(s)	32, 136, 526
CviJI	RGCY	3 cut(s)	101, 170, 346
CviKI_1	RGCY	3 cut(s)	101, 170, 346
CviQI	GTAC	3 cut(s)	6, 74, 453
DdeI	CTNAG	2 cut(s)	259, 438
DpnI	GATC	4 cut(s)	28, 134, 150, 221
DpnII	GATC	4 cut(s)	26, 132, 148, 219
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco57I	CTGAAG	1 cut(s)	261
FaeI	CATG	3 cut(s)	35, 139, 529
FaiI	YATR	8 cut(s)	33, 79, 137, 292, 294, 357, 398, 527
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	3 cut(s)	31, 135, 525
FauI	CCCGC	2 cut(s)	110, 420
Fnu4HI	GCNGC	3 cut(s)	322, 325, 404
Fsp4HI	GCNGC	3 cut(s)	322, 325, 404
FspBI	CTAG	2 cut(s)	306, 507
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	3 cut(s)	322, 325, 404
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	1 cut(s)	152
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	3 cut(s)	35, 139, 529
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HindIII	AAGCTT	1 cut(s)	168
HinfI	GANTC	8 cut(s)	139, 247, 254, 263, 269, 313, 338, 458
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	3 cut(s)	166, 226, 308
Hpy188I	TCNGA	5 cut(s)	13, 262, 268, 343, 439
Hpy188III	TCNNGA	5 cut(s)	37, 136, 152, 164, 251
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	2 cut(s)	285, 423
HpyCH4V	TGCA	1 cut(s)	403
HpyF3I	CTNAG	2 cut(s)	259, 438
Hsp92II	CATG	3 cut(s)	35, 139, 529
HspAI	GCGC	1 cut(s)	278
Kpn2I	TCCGGA	1 cut(s)	151
Kzo9I	GATC	4 cut(s)	26, 132, 148, 219
LmnI	GCTCC	1 cut(s)	343
LpnPI	CCDG	4 cut(s)	165, 177, 313, 462
Lsp1109I	GCAGC	1 cut(s)	415
MaeI	CTAG	2 cut(s)	306, 507
MaeIII	GTNAC	2 cut(s)	314, 332
MalI	GATC	4 cut(s)	28, 134, 150, 221
MboI	GATC	4 cut(s)	26, 132, 148, 219
MboII	GAAGA	4 cut(s)	142, 229, 254, 456
MflI	RGATCY	1 cut(s)	26
MluCI	AATT	3 cut(s)	41, 113, 385
MlyI	GAGTC	3 cut(s)	248, 256, 322
MnlI	CCTC	3 cut(s)	19, 148, 268
MroI	TCCGGA	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	478
MspI	CCGG	1 cut(s)	152
NdeII	GATC	4 cut(s)	26, 132, 148, 219
NlaIII	CATG	3 cut(s)	35, 139, 529
NmuCI	GTSAC	2 cut(s)	314, 332
PagI	TCATGA	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	478
PfeI	GAWTC	5 cut(s)	139, 263, 269, 338, 458
PkrI	GCNGC	3 cut(s)	323, 326, 405
PleI	GAGTC	3 cut(s)	248, 255, 321
PpsI	GAGTC	3 cut(s)	248, 255, 321
PspPI	GGNCC	1 cut(s)	100
PstI	CTGCAG	1 cut(s)	405
PstNI	CAGNNNCTG	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	26
RsaI	GTAC	3 cut(s)	7, 75, 454
RsaNI	GTAC	3 cut(s)	6, 74, 453
SatI	GCNGC	3 cut(s)	322, 325, 404
Sau3AI	GATC	4 cut(s)	26, 132, 148, 219
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	3 cut(s)	248, 256, 322
SetI	ASST	3 cut(s)	11, 172, 348
SfcI	CTRYAG	2 cut(s)	355, 401
Sse9I	AATT	3 cut(s)	41, 113, 385
SsiI	CCGC	6 cut(s)	84, 103, 319, 322, 325, 427
SspMI	CTAG	2 cut(s)	306, 507
TaaI	ACNGT	2 cut(s)	285, 423
TaqI	TCGA	3 cut(s)	183, 250, 375
TasI	AATT	3 cut(s)	41, 113, 385
TatI	WGTACW	1 cut(s)	452
TauI	GCSGC	2 cut(s)	324, 327
TfiI	GAWTC	5 cut(s)	139, 263, 269, 338, 458
TseFI	GTSAC	2 cut(s)	314, 332
TseI	GCWGC	1 cut(s)	403
Tsp45I	GTSAC	2 cut(s)	314, 332
TspDTI	ATGAA	3 cut(s)	152, 378, 450
TspGWI	ACGGA	1 cut(s)	424
XapI	RAATTY	1 cut(s)	41
XmnI	GAANNNNTTC	1 cut(s)	478
XspI	CTAG	2 cut(s)	306, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.